IntroductionThe waters surrounding the Wanshan Islands are important traditional fishing grounds in China, with rich habitat types. Acanthopagrus latus is an economically important species in this area; however, the distribution of its spawning grounds and habitat use patterns remain unknown.MethodsThus 100 otolith samples of A. latus were collected from three geographic areas (MW: Qi’ao Island Mangrove Water Habitat; OW: Yamen Estuary Oyster Farm Water Habitat; RW: Dong’ao-Guishan Island Reef Water Habitat), and the concentrations of Sr and Ca along the shortest axis of the vertical otolith annual or lunar rings were measured to span the entire life cycle of A. latus, with the core and edge areas corresponding to environmental characteristics at birth and capture, respectively.Results and discussionAnalysis of covariance (ANCOVA) revealed that the ratios of Sr/Ca in otolith edges of RW samples are significantly higher than those of OW and MW samples; however, both the values of Sr/Ca ratio in otolith cores collected from OW and MW are comparable with those of RW samples. Cluster analysis and non-metric multidimensional scaling (nMDS) indicated that at the juvenile stage, RW and MW individuals in the two main clusters belonged to the same cluster. There was no significant difference between the cores of the RW samples and the edges of the MW and OW samples. Therefore, the spawning area of A. latus in the Wanshan Islands is thought to have originated from low to medium-salinity waters with mangroves and oyster farm habitats in the Pearl River Estuary. A. latus from RW was found to have three distinct habitat-use patterns: 1) Marine Resident (7.2% of sampled fish) fish that remain in marine habitats for life; 2) Marine Migrant (16.4% of sampled fish) juveniles inhabit low to moderate salinity habitats and migrate to marine habitats as they grow; 3) Estuarine Visitor (76.4% of sampled fish) repeated migration between low to moderate salinity and marine habitats. This suggests widespread migration between estuarine and marine habitats throughout the ontogeny. The plasticity of this habitat use and the protection of spawning grounds should be considered in future fisheries management because A. Latus in this area has been the victim of the overexploitation of resources.