Habitat Niche Research Articles

Comparative assessment of habitat suitability and niche overlap of three medicinal and melliferous Satureja L. species (Lamiaceae) from the eastern Adriatic region: Exploring potential for cultivation

In Croatia, there are three Satureja species groups (tSsg) within the Satureja L. genus that are most widely used as medicinal and melliferous plants: the Satureja montana complex, S. subspicata complex and S. cuneifolia. Due to the high melliferous and medicinal potential of these taxa, our objective was to comparatively assess the habitat suitability of the tSsg to estimate their cultivation potential in the eastern Adriatic region. In addition, we assessed their overlaps in geographic and environmental space and investigated the occurrence of the putative hybrid taxon S. × karstiana in the areas of overlap between the two parental taxa (S. montana and S. subspicata). Finally, the differences in the environmental preferences of these three related species groups were investigated. The species distribution models were built using the maximum entropy method (MaxEnt) based on the occurrences of the tSsg, obtained from our field research in 2018–2021 and partly from the Flora Croatica Database. Six environmental variables (three bioclimatic and three topographic) were selected as predictors. The potential habitat suitability of the tSsg under current conditions showed high predictive model performance, with AUC values ranging from 0.890 to 0.910 ± 0.025. The environmental predictors with the highest mean percent contributions to the models were annual temperature range (Bio 7) for S. montana (74.3%) and S. subspicata (65.9%) and downwards surface solar radiation (Srad) for S. cuneifolia (40%). Majority (>90%) of the known S. × karstiana hybrid occurrences were found within the areas of habitat suitability overlap between the two parental taxa, confirming the model accuracy and efficiency in the discovery of putative hybrids. Finally, the niche overlap in environmental space between the investigated taxa pairs was the highest between S. montana and S. subspicata, enabling their hybridization, and lowest between S. cuneifolia and S. subspicata. Due to the widest potential distribution and broadest environmental niche, our results suggest that S. montana has the highest potential for cultivation for medicinal and melliferous purposes in the eastern Adriatic, particularly in light of ongoing climate change.

Evaluating and forecasting the niche fitness of regional innovation ecosystems: A comparative evaluation of different optimized grey models

There is little research that evaluates the niche fitness of regional innovation ecosystems (RIEs) based on current niche theories, even though RIE development is a key driver of national and regional development. This study seeks to address the gap in research by constructing an evaluation index system and an evaluation model for the niche fitness of RIEs based on niche theories and by assessing the niche fitness of 30 Chinese RIEs for the years 2010 to 2019. The results show, first, that from 2010 to 2019, the niche fitness of Chinese RIEs overall was low. We suggest one possible reason for this finding might be the imbalanced development of different Chinese RIEs, as well as the lagging development of China's innovation community and habitat niche. Second, our findings show that RIE development needs a higher level of support from different ecological factors. Moreover, studies that predict the niche fitness of RIEs using forecasting models such as the grey model—GM (1,1)—remain scarce, even though forecasting the niche fitness of RIEs could provide a good reference for formulating innovation policies. Therefore, this study, aiming to fill this research gap, also establishes an optimized grey model—FMCGM (1,1)—to forecast the niche fitness of Chinese RIEs for the years 2021–2025, in addition to the analysis discussed above. Our results obtained by using FMCGM (1,1) show, first, that in the period 2021–2025, the niche fitness of Chinese RIEs will gradually increase, and second, that the development mode of Chinese RIEs will change from one mainly supported by the resource niche and the technology niche into a more balanced support mode via different ecological factors. To sum up, this study, presenting new methods to evaluate and forecast the niche fitness of RIEs, not only contributes to the research of RIE and grey forecasting models but also provides new insights for RIE governance.

The role of climate change and niche shifts in divergent range dynamics of a sister-species pair.

Species ranges are set by limitations in factors including climate tolerances, habitat use, and dispersal abilities. Understanding the factors governing species range dynamics remains a challenge that is ever more important in our rapidly changing world. Species ranges can shift if environmental changes affect available habitat, or if the niche or habitat connectivity of a species changes. We tested how changes in habitat availability, niche, or habitat connectivity could contribute to divergent range dynamics in a sister-species pair. The great-tailed grackle (Quiscalus mexicanus) has expanded its range northward from Texas to Nebraska in the past 40 years, while its closest relative, the boattailed grackle (Quiscalus major), has remained tied to the coasts of the Atlantic Ocean and the Gulf of Mexico as well as the interior of Florida. We created species distribution and connectivity models trained on citizen science data from 1970-1979 and 2010-2019 to determine how the availability of habitat, the types of habitat occupied, and range-wide connectivity have changed for both species. We found that the two species occupy distinct habitats and that the great-tailed grackle has shifted to occupy a larger breadth of urban, arid environments farther from natural water sources. Meanwhile, the boattailed grackle has remained limited to warm, wet, coastal environments. We found no evidence that changes in habitat connectivity affected the ranges of either species. Overall, our results suggest that the great-tailed grackle has shifted its realized niche as part of its rapid range expansion, while the range dynamics of the boat-tailed grackle may be shaped more by climate change. The expansion in habitats occupied by the great-tailed grackle is consistent with observations that species with high behavioral flexibility can rapidly expand their geographic range by using human-altered habitat. This investigation identifies how opposite responses to anthropogenic change could drive divergent range dynamics, elucidating the factors that have and will continue to shape species ranges.

Control factors of soil diazotrophic community assembly and nitrogen fixation rate across eastern China

Biological nitrogen (N) fixation is an essential N input into terrestrial ecosystems and plays a critical role in global N cycling. However, the driving factors of the diazotrophic community composition and soil N fixation rate at the regional scale remain largely unclear, especially in different land-use types. Here, we explored the environmental adaptation of diazotrophic communities and controlling factors of N fixation in maize, rice, and forest soils across eastern China. Results showed that the diversity, composition, and co-occurrence network differed significantly among these habitats, with a relatively higher alpha diversity and network complexity in rice fields. The mean annual precipitation plays a predominant role in shaping diazotrophic community composition. Dispersal limitation, belonging to stochastic processes, contributed most to diazotrophic community assembly in terrestrial ecosystems. Habitat niche breadth analysis indicated that the environmental adaptation of diazotrophic communities was highest in rice fields, followed by forest and maize fields. The overall N fixation rate was higher in rice fields, followed by maize and forest soils. Structural equation modeling revealed that the N fixation rate was mainly affected by soil properties in maize and forest soils. In contrast, the N fixation rate was more influenced by diazotrophic community composition and climatic factors in rice habitats. Our results revealed that the environmental adaptation of the diazotrophic communities and controlling factors of the N fixation function were different among maize, rice, and forest ecosystems. These findings will help us understand and predict the N bioavailability in different ecosystem types under climate changes.

Ecological niche modelling of a critically endangered species Commiphora wightii (Arn.) Bhandari using bioclimatic and non-bioclimatic variables

BackgroundThe aim of this study is to examine the effects of four different bioclimatic predictors (current, 2050, 2070, and 2090 under Shared Socioeconomic Pathways SSP2-4.5) and non-bioclimatic variables (soil, habitat heterogeneity index, land use, slope, and aspect) on the habitat suitability and niche dimensions of the critically endangered plant species Commiphora wightii in India. We also evaluate how niche modelling affects its extent of occurrence (EOO) and area of occupancy (AOO).ResultsThe area under the receiver operating curve (AUC) values produced by the maximum entropy (Maxent) under various bioclimatic time frames were more than 0.94, indicating excellent model accuracy. Non-bioclimatic characteristics, with the exception of terrain slope and aspect, decreased the accuracy of our model. Additionally, Maxent accuracy was the lowest across all combinations of bioclimatic and non-bioclimatic variables (AUC = 0.75 to 0.78). With current, 2050, and 2070 bioclimatic projections, our modelling revealed the significance of water availability parameters (BC-12 to BC-19, i.e. annual and seasonal precipitation as well as precipitation of wettest, driest, and coldest months and quarters) on habitat suitability for this species. However, with 2090 projection, energy variables such as mean temperature of wettest quarter (BC-8) and isothermality (BC-3) were identified as governing factors. Excessive salt, rooting conditions, land use type (grassland), characteristics of the plant community, and slope were also noticed to have an impact on this species. Through distribution modelling of this species in both its native (western India) and exotic (North-east, Central Part of India, as well as northern and eastern Ghat) habitats, we were also able to simulate both its fundamental niche and its realized niche. Our EOO and AOO analysis reflects the possibility of many new areas in India where this species can be planted and grown.ConclusionAccording to the calculated area under the various suitability classes, we can conclude that C. wightii's potentially suitable bioclimatic distribution under the optimum and moderate classes would increase under all future bioclimatic scenarios (2090 > 2050 ≈ current), with the exception of 2070, demonstrating that there are more suitable habitats available for C. wightii artificial cultivation and will be available for future bioclimatic projections of 2050 and 2090. Predictive sites indicated that this species also favours various types of landforms outside rocky environments, such as sand dunes, sandy plains, young alluvial plains, saline areas, and so on. Our research also revealed crucial information regarding the community dispersion variable, notably the coefficient of variation that, when bioclimatic + non-bioclimatic variables were coupled, disguised the effects of bioclimatic factors across all time frames.

Habitat and ecological niche characteristics of the elusive Hairy-eared Dwarf Lemur (Allocebus trichotis) with updated occurrence and geographic range data.

Ecological niche modeling (ENM) is particularly useful in the study of cryptic and elusive species that are only rarely seen, difficult to study in the wild, and simultaneously threatened by a multitude of anthropogenic factors. We collected presence records one such example, the understudied Hairy-eared Dwarf Lemur (Allocebus trichotis), from the literature and supplemented these with observations from surveys in previously unstudied areas to model its fundamental and realized niche throughout Madagascar. We further evaluated habitat characteristics at each sighting location to judge its conservation status and its adaptability towardhabitat degradation. We found 31 presence localities in the literature and directly observed A. trichotis a further 23 times. According to the ENMs, precipitation of the driest quarter and maximum temperature of the warmest month mostly influenced its distribution, restricting it to the higher altitudes of the northeastern humid forests of Madagascar. Its fundamental niche, extent of occurrence, and area of occupancy were estimated as 65,819, 53,054, and 16,967 km²respectively. The latter, however, declined by 29.2% since 1990. On a habitat level, it was most often observed in primary forest habitats of different degradation stages (85.7%, n = 21). The fundamental niche of A. trichotis is most likely restricted by climatic factors. Although it can be found in moderately degraded forests, it is known to depend on the availability of tree holes and therefore old-growth forest structures. Ongoing deforestation and habitat fragmentation are likely to be the major threats to the survival of this species. Our ENMs provide evidence on where to intensify survey efforts on the elusive Hairy-eared Dwarf Lemurs of Madagascar.

Oral Microbiota-One Habitat or Diverse Niches? A Pilot Study of Sampling and Identification of Oral Bacterial and Fungal Biota in Patients with Type I Diabetes Mellitus Treated with Insulin Pump.

The oral microbiota is a very complex and dynamic microbial ecosystem. Alterations of its balance can result in oral and systemic diseases. We aimed to characterize the microbiota in particular niches of the oral cavity in adult type 1 diabetes patients treated with continuous infusion of insulin with insulin pump (IP). In addition, we aimed to determine optimal sites of oral microbiota sampling in studies of large research groups of patients with DM I. In this pilot study, we sampled the buccal and soft palate mucosa, tongue, palatal and buccal dental surfaces and gingival pockets of adult DM I patients treated with IP. In total, 23 patients were recruited. The oral microbiota was dominated by Streptococus and Neisseria, with a low incidence of cariogenic S. mutans and Lactobacillus, as well as periodontal pathogens such as Prevotella. There were significant differences in overall CFU counts of all strains, Gram-positive, Staphylococci, Streptococci and S. oralis strains between mucosal and dental surface sites. The overall CFU counts of all strains and Gram-positive strains were higher in dental sites vs. mucosal sites (both p < 0.001). CFU counts of S. oralis were significantly higher in dental sites vs. gingival pocket sites (p = 0.013). Candida species were rare. The mucosal sites on the buccae presented lower diversity and bacterial counts. In the study group of adult DM I patients treated with IP, the microbiota in particular niches of the oral cavity was significantly different. Three distinct and optimally appropriate sampling sites for oral microflora were identified: buccal and palatal mucosa, dental surface and gingival pockets. The results of this study may be the basis for further studies of large groups of patients with DM I.

A complete genus-level phylogeny reveals the Cretaceous biogeographic diversification of the poppy family

Angiosperms, a trigger for the Cretaceous Terrestrial Revolution (KTR), underwent a rapid expansion and occupied all the environments during the Mid-Upper Cretaceous. Yet, Cretaceous biogeographic patterns and processes underlying the distribution of angiosperm diversity in the Northern Hemisphere are still poorly known. Here, we elucidated the biogeographic diversification of the angiosperm family Papaveraceae, an ancient Northern Hemisphere clade characterized by poor dispersal ability and high level of regional endemism. Based on both plastome and multi-locus datasets, we reconstructed a robust time-calibrated phylogeny that includes all currently recognized 45 genera of this family. Within the time-calibrated phylogenetic framework, we conducted 72 biogeographic analyses by testing the sensitivity of uncertainties of area delimitation, maxarea constraints, and the parameters of the model, i.e., j (describing jump-dispersal events) and w (modifying dispersal multiplier matrices), to ancestral range estimations. We also inferred ancestral habitat and ecological niches. Phylogenetic analyses strongly support Papaveraceae as monophyletic. Pteridophylloideae is strongly supported as sister to Hypecoideae-Fumarioideae. Our results indicate that the j parameter and number of predefined areas strongly affect ancestral range estimates, generating questionable ancestral ranges, whereas maxarea constraint and w parameter have no effect and improve model fit. After accounting for these uncertainties, our results indicate that Papaveraceae differentiated in Asian wet forests during the Lower Cretaceous and subsequently occupied the Asian and western North American arid and open areas. Three dispersals from Asia to western North America via the Bering land bridge occurred in the Mid-Upper Cretaceous, largely in agreement with the KTR. Habitat shift and ecological niche divergence resulted in the subsequent disjunctions between Asia and western North America. These findings suggest that the interplay of range expansion and niche divergence-driven vicariance might have shaped Cretaceous biogeographic patterns of angiosperms with Papaveraceae-like ecological requirements and dispersal abilities in the Northern Hemisphere, hence contributing to the knowledge on the geographic expansion of angiosperms during the KTR.

Gastropod Microhabitat Associations and Niches in Seagrass Ecosystems on Donrotu Island, South Jailolo District, West Halmahera Regency

Gastropods are included in the mollusk phylum which is known to be well-associated with seagrass ecosystems. The gastropod community is an important component in the food chain in seagrass beds and ecologically seagrass beds have an important role in the ecosystem. Seagrass ecosystems are habitats and food sources for fish and other aquatic biota. One of the biota commonly found in seagrass beds is Gastropods. This study was conducted to know the composition of gastropod species, types of gastropod associations, and gastropod microhabitat niches in seagrass ecosystems on Donrotu Island. Gastropod sampling was carried out at low tide. The gastropod samples found were then put into a plastic bag that already contained a label. Furthermore, the gastropod samples were brought ashore to count the number of individuals of each type and determined based on morphological characteristics such as shell shape, shell color, shell mouth opening, and spiral circle based on Dharma (1992) instructions. Based on the results of the study, the composition of the types of gastropods found in the seagrass ecosystem on the island of Donrotu was as many as 13 species. There were 13 pairs of gastropod types that had positive associations and 65 pairs of no associations. The type of gastropod that has the widest habitat niche is Cypraea tigris and the narrowest are Naticarius coillei and Pseudovertagus aluco.

Genomic and Metabolite Profiling Reveal a Novel Streptomyces Strain, QHH-9511, from the Qinghai-Tibet Plateau.

The prevalence of superbugs, represented by methicillin-resistant Staphylococcus aureus (MRSA), has become a serious clinical and public safety concern with rising incidence in hospitals. Polyketides with diverse chemical structures harbor many antimicrobial activities, including those of rifampin and rapamycin against MRSA. Streptomyces sp. QHH-9511 was isolated from a niche habitat in the Qinghai-Tibet Plateau and used to produce antibacterial metabolites. Herein, an integrated approach combining genome mining and metabolic analysis were employed to decipher the chemical origin of the antibacterial components with pigmented properties in strain QHH-9511, a novel Streptomyces species from a lichen symbiont on the Qinghai-Tibet Plateau. Genomic phylogeny assembled at the chromosome level revealed its unique evolutionary state. Further genome mining uncovered 36 candidate gene clusters, most of which were uncharacterized. Meanwhile, based on liquid chromatography coupled to diode array detection mass spectrometry, a series of granaticins, BSMs, chromones, phaeochromycins, and related molecules were discovered by using the Global Natural Product Social molecular networking platform. Subsequently, several pigment compounds were isolated and identified by high-resolution mass spectrometry and/or nuclear magnetic resonance, among which the structure-activity relationships of seven aromatic polyketides showed that the fused lactone ring of the C-2 carboxyl group could increase antibacterial activity. Genetic experiments indicated that all seven aromatic polyketides are a series of metabolic shunts produced by a single type II polyketide synthase (PKS) cluster. Comparative genomic analysis of granaticin producers showed that the granaticin gene cluster is widely distributed. This study provides an efficient method to combine genome mining and metabolic profiling techniques to uncover bioactive metabolites derived from specific habitats, while deepening our understanding of aromatic polyketide biosynthesis. IMPORTANCE Undescribed microorganisms from special habitats are being screened for anti-superbug drug molecules. In a project to screen actinomycetes for anti-MRSA activity, we isolated a Streptomyces strain from Qinghai Lake lichens. The phylogeny based on the genome assembled at the chromosome level revealed this strain's unique evolutionary state. The chemical origins of the antibacterial components with pigment properties in strain QHH-9511 were determined using an integrated approach combining genome mining and metabolic analysis. Further genome mining uncovered 36 secondary metabolite gene clusters, the majority of which were previously unknown. A series of aromatic compounds were discovered using molecular network analysis, separation, and extraction. Genetic experiments revealed that all seven aromatic polyketides are a series of metabolic shunts produced by a single cluster of type II PKSs. This study describes a method for identifying novel Streptomyces from specific habitats by combining genome mining with metabolic profiling techniques.

The Taming of Smeagol? A New Population and an Assessment of the Known Population of the Critically Endangered Pulmonate Gastropod Smeagol hilaris (Heterobranchia, Otinidae)

The genus Smeagol consists of five named species of air-breathing marine slugs (restricted to southern Australia and New Zealand) and three undescribed taxa from southern Japan. Only one species, S. hilaris, is known to be from New South Wales (NSW), and it previously had a known distribution limited to one site, Merry Beach on the south coast. This diminutive invertebrate is classified as critically endangered in NSW due to its extremely restricted distribution and concern about its historically declining numbers. Accordingly, the aims of this study were to survey the known population of S. hilaris at Merry Beach and to explore other potentially suitable sites, using a visual census method, to determine if further populations or species exist in NSW. The resulting quantitative surveys of the known population and a new population at Storm Bay, Kiama, NSW, are reported here. DNA barcoding of a ~650 bp segment of the mitochondrial cytochrome c oxidase I (COI) gene for several individuals from each population confirmed the conspecificity among the two populations. The population at Merry Beach was found to remain viable, while the discovery of the new population of S. hilaris represents a doubling of the known global populations of this species. Details of the highly-specialised niche habitat occupied by Smeagol in New South Wales and recommendations for ongoing management are documented.

Predicting the distributions of Pouteria adolfi‐friederici and Prunus africana tree species under current and future climate change scenarios in Ethiopia

AbstractDistributions of potential ranges of plant species are not yet fully known in Ethiopia where high climatic variability and vegetation types are found. This study was undertaken to predict distributions of suitable habitats of Pouteria adolfi‐friederici and Prunus africana under current and two future climate scenarios (RCP 4.5 and RCP 8.5 in 2050 and 2070) in Ethiopia. Eleven environmental variables with less correlation coefficients (r &lt; 0.7) were used to make the prediction. Shifting in extents of habitat suitability and effects of elevation, solar radiation and topographic position in relation to the current and future climatic scenarios were statistically analysed using independent t‐test and linear model. We found decreasing area of highly suitable habitat from 0.51% to 0.46%, 0.36% and 0.33%, 0.24% for Prunus africana and 1.13% to 1.02%, 0.77% and 0.76%, 0.60% for Pouteria adolfi‐friederici, under RCP 4.5 and RCP 8.5 by 2050 and 2070 respectively. Moist and dry afromontane forests are identified as the most suitable habitat for both species. Overall, our results suggest that climate change can promote dynamic suitable habitat niches under different future climate scenarios. Therefore, biodiversity conservation strategies should take into account habitat suitability dynamics issues and identify where to conserve species before implementing conservation practices.

Habitat and trophic niche overlap among juvenile black sea bass, tautog, and cunner: interspecific interactions amid a species geographic range expansion

Juvenile black sea bass Centropristis striata populations are increasing in southern New England estuaries of the northeastern USA with possible trophodynamic effects on labrid species: tautog Tautoga onitis and cunner Tautogolabrus adspersus. In this study, we examined the abundance, size-structure, and feeding ecology of juvenile sea bass and labrids in Narragansett Bay (Rhode Island, USA) from June to October in 2018 and 2019 and evaluated potential interspecific competition using habitat, diet, and isotopic niche overlap indices. Juveniles (age-0+) of each fish species spatiotemporally co-occurred in shallow, polyhaline habitats throughout the estuary. Age-0 cohorts were numerically dominant across species and initially recruited to the study area in July (minimum total length, TL = 15-20 mm), reached peak abundances in mid- to late summer (maximum abundances = 12-140 fish 100 m-2), and emigrated from field sites in October (maximum TL = 85-96 mm). Stomach content and stable isotope (δ15N and δ13C) analyses determined that focal fishes were generalist carnivores that foraged in bentho-pelagic food webs. Fishes also overlapped in their respective ambit and core isotopic niche space, but interspecific dietary overlap was size-dependent. Dietary overlap was most pronounced between sea bass ≤49 mm TL and labrids ≤59 mm TL due to their mutual reliance on gammarid and caprellid amphipods. Ontogenetic dietary shifts then resulted in food niche segregation, such that sea bass 50-139 mm TL consumed decapod crustaceans and fish, whereas labrids 60-181 mm TL mainly fed on amphipods, worms, bivalves, and turf-associated biota, i.e. bryozoans, hydroids, and seaweeds. Habitat and trophic niche overlap between early juvenile sea bass and labrids purportedly have not caused opposite population trajectories or food resource limitation in Narragansett Bay, indicating an absence of exploitative competition. Alternatively, realized competition between species may be too spatiotemporally restricted to alter their population dynamics. Continuous monitoring of the sea bass’s bio-ecological effects in southern New England estuaries is warranted, however, given their recent range expansion and increasing abundances at northern latitudes.

Benthic communities of the lower mesophotic zone on One Tree shelf edge, southern Great Barrier Reef, Australia

Context Increasing interest in mesophotic coral ecosystems has shown that reefs in deep water show considerable geomorphic and ecological variability among geographic regions. Aims We provide the first investigation of mesophotic reefs at the southern extremity of the Great Barrier Reef (GBR) to understand the biotic gradients and habitat niches in the lower mesophotic zone. Methods Multibeam data were used to target five benthic imagery transects collected in the lower mesophotic (80–130 m) zone from the shelf edge near One Tree Island (23°S, 152°E) by using a single HD-SDI subsea camera. Key results Transects supported similar benthic communities in depths of 80–110 m, with the abundance of sessile benthos declining below ~110 m where the shelf break grades into the upper continental slope. Conclusions The effect of the Capricorn Eddy may be promoting homogeneity of benthic assemblages, because it provides similar environmental conditions and potential for connectivity. Variation in benthic communities between hard and soft substrate and differing topographic relief within the study site are likely to be influenced by variation in sedimentation, including sensitivity to suspended particles. Implications This study highlighted that the lower mesophotic region on the One Tree shelf edge supports mesophotic coral ecosystems that vary depending on depth and substrate.

Selection of Nesting Habitat and Insular Niche Separation of Two Sympatric Aquila Species

Aquila chrysaetos and Aquila fasciata are two congeneric eagle species distributed in the Mediterranean region which are supposed to compete for similar breeding and foraging resources. In the present study, bioclimatic, topographic, and human-related habitat parameters were investigated for 64 and 75 nest sites of Golden and Bonelli’s eagles, respectively. The nests were found during fieldwork undertaken from 1995–2020. Overall, the habitat parameters that best discriminated nest site selection were associated with elevation, temperature, and land use with topographic variables being most powerful for niche separation. Univariate analysis, regression, and species distribution modeling identified a strong association of the species with altitude pinpointing the Golden eagle’s mountainous and continental character and the Bonelli’s eagle being a lowland and coastal species. Golden eagle nests were situated away from human settlements on steep cliffs in higher altitude areas with transitional woodland-shrub vegetation. In contrast Bonelli’s eagle nests were located on low-altitude warmer zones, closer to the coast and human settlements with more natural grasslands in their vicinity. The ecological niche separation of the two species was best described by altitude and temperature, though no clear-cut evidence was detected for their competitive exclusion. Inter-specific nearest neighboring distance was found statistically significant only for the Golden eagle which seems to be less tolerant in its co-existence with the Bonelli’s eagle. Conservation measures for both species should target territories under human pressure, though more research should focus on the species range use and habitat heterogeneity within overlapping territories.

Further food for thought: higher tropical mountains revisited once again

D.H. Janzen argued that tropical mountains, for their heights, pose greater migration barriers than temperate mountains owing to lower temperature seasonality, and consequent greater niche and ecosystem specialization. These result in distinct altitudinal zonation under hardly varying temperature lapse rates. The Asian Far East alone provides an opportunity to test this hypothesis owing to latitudinal continuity of evergreen forests from equator to warm temperate zone. With data from four mountains, we find Janzen’s hypothesis broadly correct. The primary and most consistent mediator of forest zonation and therefore species’ habitat specificity is soil, itself indirectly mediated by climate. But declining habitat niche specificity does not proceed north along a continuum, instead in a series of latitudinal steps initiated by quite sudden habitat changes. Tropical montane forests are altitudinally floristically and structurally zoned by factors only indirectly mediated by temperature. Equatorial forests experience continuously wet climates and a frost line at c.4100 m. North of 8°N, temperature and rainfall seasonality increases and winter air frosts descend to c.2000 m. Upper montane forest becomes truncated, while lower montane forest continues to the frost line which remains constant in moist climates. The margin of the wet tropics is pushed north to 27°N by the Himalaya. Annual frost at c.2000 m here marks a narrow ecotone between tropical lower montane forest and warm temperate evergreen lucidophyll forest, a formation unique to east Asia. In equably moist South China, the lowland tropical-warm temperate (‘subtropical’) margin returns to the Tropic of Cancer and appears to be narrow at all altitudes. The temperate forests exhibit less distinct and inconsistent altitudinal zonation, instead manifesting an altitudinal floristic and structural continuum mediated by winter frost frequency and intensity.

Habitat use by the endangered spotted-tailed quoll in a fragmented landscape

The spotted-tailed quoll (Dasyurus maculatus) is an endangered mesopredator endemic to Australia. It is generally considered a forest-dependent species associated with large, intact forested habitats. In Australia’s mainland, quoll research has typically been conducted in contiguous forest, and consequently, the species’ presumed forest-dependency might reflect sampling bias rather than preferred habitat niche. Recent studies have revealed that quolls also persist in fragmented agricultural landscapes, raising questions about their true habitat requirements and preferences. In this study, we investigated quoll habitat use within a fragmented agricultural landscape in mainland Australia. We deployed 42 lured camera traps to determine quoll habitat preferences across four broad vegetation types (open grassland, grassy woodland, dry sclerophyll forest, and wet sclerophyll forest) based on quoll activity and occupancy. Quolls were detected in all vegetation types, and quoll activity indicated a preference for dry sclerophyll forest and grassy woodlands, although this preference varied depending on the time of year. Our results suggest that quoll habitat use in mainland Australia is more flexible than previously assumed, and we recommend further research on factors that may influence habitat preference such as prey availability and seasonal behavior. Understanding the factors that drive habitat use by quolls outside of contiguous forested landscapes will inform and improve conservation and management strategies to ensure critical habitat for the species is protected and retained in an increasingly fragmented landscape.

Modeling the distribution of invasive species (Ambrosia spp.) using regression kriging and Maxent

Invasion by non-native species due to human activities is a major threat to biodiversity. The niche hypothesis for invasive species that rapidly disperse and disturb ecosystems is easily discarded owing to eradication activities or unsaturated dispersal. Here, we used spatial and non-spatial models to model the distribution of two invasive plant species (Ambrosia artemisiifolia and Ambrosia trifida), which are widely distributed, but are also being actively eradicated. Regression kriging (RK) and Maxent were used to predict the spatial distribution of the two plant species having eradication targets for decades in South Korea. In total, 1,478 presence/absence data points in the Seoul metropolitan area (∼11,000 km2 in northeastern South Korea) were used. For regression kriging, the presence/absence data were first fitted with environmental covariates using a generalized linear model (GLM), and then the residuals of the GLM were modeled using ordinary kriging. The residuals of GLM showed significant spatial autocorrelation. The spatial autocorrelation was modeled using kriging. Regression kriging, which considers the spatial structure of data, yielded area under the receiver operating curve values of 0.785 and 0.775 for A. artemisiifolia and A. trifida, respectively; however, the values of Maxent, a non-spatial model, were 0.619 and 0.622, respectively. Thus, regression kriging was advantageous as it considers the spatial autocorrelation of the data. However, species distribution modeling encounters difficulties when the current species distribution does not reflect optimal habitat conditions (the niche habitat preferences) or when colonization is disturbed by artificial interference (e.g., removal activity). This greatly reduces the predictive power of the model if the model is based solely on the niche hypotheses that do not reflect reality. Managers can take advantage of regression modeling when modeling species distributions under conditions unfavorable to the niche hypothesis.

Community phylogeny and spatial scale affect phylogenetic diversity metrics in a species-rich rainforest in Borneo.

Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to analyze phylogenetic diversity. Sythetic trees have often been used in the construction of phylogenentic trees; however, in tropical rainforests with many closely related species, synthetic trees contain many unresolved nodes, which may affect the results of phylogenetic structure analysis. Here, we constructed a phylogenetic tree using DNA barcode sequences (rbcL, matK, trnH-psbA) for 737 tree species from the rainforests of Borneo, which have a high-species diversity and many closely related species. The phylogenetic tree had fewer polytomies and more branch length variations than the Phylocom synthetic trees. Comparison of community phylogenetic analyses indicated that values of the standardized effect size of mean pairwise distance (SES-MPD) were highly correlated between Phylocom and DNA barcode trees, but less so for the standardized effect size of mean nearest taxon distance (SES-MNTD), suggesting that caution is needed when using synthetic trees for communities containing many congeneric species, especially when using SES-MNTD. Simulation analysis suggested that spatial dependence on phylogenetic diversity is related to the phylogenetic signal of the species' habitat niche and the spatial structure of habitat, indicating the importance of detailed phylogeny in understanding community assembly processes.

Temporal stability of polymorphic Arctic charr parasite communities reflects sustained divergent trophic niches.

Polymorphic Arctic charr Salvelinus alpinus populations frequently display distinct differences in habitat use, diet, and parasite communities. Changes to the relative species densities and composition of the wider fish community have the potential to alter the habitat niche of sympatric Arctic charr populations. This study evaluated the temporal stability of the parasite community, diet, and stable isotopes (δ13C, δ15N) of three sympatric Arctic charr morphs (piscivore, benthivore, and planktivore) from Loch Rannoch, Scotland, in relation to changes to the fish community. All Arctic charr morphs displayed distinct differences in parasite communities, diet, and stable isotope signatures over time, despite the establishment of four new trophically transmitted parasite taxa, and increased fish and zooplankton consumption by the piscivorous and planktivore morphs, respectively. Native parasite prevalence also increased in all Arctic charr morphs. Overall, Loch Rannoch polymorphic Arctic charr morph populations have maintained their distinct trophic niches and parasite communities through time despite changes in the fish community. This result indicates that re-stocking a native fish species has the potential to induce shifts in the parasite community and diet of Arctic charr morphs.