Small proteinaceous infectious particles called prions cause certain neuro-degenerative diseases in human and animals. Limited proteolysis of infectious scrapie prions PrPSc yields an N-truncated polypeptide termed PrP 27-30, which encompasses residues 90 to 231 of PrPSc and which assembles into 100 to 200 Å wide amyloid rods. It has been hypothesized that the infectious prion is converted from its non-infectious cellular form (PrPC) by means of an α-helical to β-sheet conformational change. Secondary structure analysis, computer modeling, and structural biophysics methods support this hypothesis. Residues 90 to 145 of PrP, which contain two putative α-helical domains H1 and H2, may be of particular relevance to the disease pathogenesis, as C-terminal truncation at residue 145 was found in a patient with an inherited prion disease. Moreover, our recent X-ray diffraction analysis suggests that the peptide consisting of these residues (designated SHa 90-145) closely models the amyloidogenic β-sheet core of PrP. In the current study, we have analyzed in detail the X-ray diffraction patterns of SHa 90-145. Two samples were examined: one that was dehydrated under ambient conditions whilst in an external magnetic field (to induce fibril orientation), and another that was sealed after partial drying. The dried, magnetically oriented sample showed a cross-β diffraction pattern in which the fiber axis (rotation axis) was parallel to the H-bonding direction of the β-sheets. The major wide-angle peaks indicate the presence of ∼40 Å wide β-crystallites, which constitute the protofilament. Each crystallite is composed of several orthogonal unit cells, normal to the fiber (a-axis) direction, having lattice constants a=9.69 Å, b=6.54 Å, and c=18.06 Å. Electron density maps were calculated by iterative Fourier synthesis using β-silk as an initial phase model. The distribution of density indicated that there were two types of β-sheet, suggesting that larger and smaller side-chains localized to different sheets. This would arise from folding of the polypeptide in which there are turns in the middle of both the H1 and H2 domains. A monoclinic macrolattice, with a=9.61 Å, b=c=52.99 Å and α=114.6°, was found to index all the reflections, including those in the low-angle region. This suggests that the β-crystallites are nearly hexagonally packed. To account for the ∼100 Å wide fibers visualized by negative staining in the electron microscope, the β-crystallites would be arranged in 4-mers. The partially dried sample showed a sharp 4.7 Å reflection (from H-bonding) and five broad peaks superimposed on monotonically decreasing diffuse scattering. This solution-like scattering was modeled by an anisometric rectangle with a thickness comparable to a singe β-chain. The structure, which occurred during dehydration, could be a transient in the α-helical to β-sheet conversion, suggesting that formation of hydrogen bonding precedes the inter-sheet interaction and assembly into the amyloid of scrapie prion.
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