Growth Promotion Of Rice Research Articles

Alterations in the Endophyte-Enriched Root-Associated Microbiome of Rice Receiving Growth-Promoting Treatments of Urea Fertilizer and Rhizobium Biofertilizer.

We examined the bacterial endophyte-enriched root-associated microbiome within rice (Oryza sativa) 55 days after growth in soil with and without urea fertilizer and/or biofertilization with a growth-promotive bacterial strain (Rhizobium leguminosarum bv. trifolii E11). After treatment to deplete rhizosphere/rhizoplane communities, washed roots were macerated and their endophyte-enriched communities were analyzed by 16S ribosomal DNA 454 amplicon pyrosequencing. This analysis clustered 99,990 valid sequence reads into 1105 operational taxonomic units (OTUs) with 97% sequence identity, 133 of which represented a consolidated core assemblage representing 12.04% of the fully detected OTU richness. Taxonomic affiliations indicated Proteobacteria as the most abundant phylum (especially α- and γ-Proteobacteria classes), followed by Firmicutes, Bacteroidetes, Verrucomicrobia, Actinobacteria, and several other phyla. Dominant genera included Rheinheimera, unclassified Rhodospirillaceae, Pseudomonas, Asticcacaulis, Sphingomonas, and Rhizobium. Several OTUs had close taxonomic affiliation to genera of diazotrophic rhizobacteria, including Rhizobium, unclassified Rhizobiales, Azospirillum, Azoarcus, unclassified Rhizobiaceae, Bradyrhizobium, Azonexus, Mesorhizobium, Devosia, Azovibrio, Azospira, Azomonas, and Azotobacter. The endophyte-enriched microbiome was restructured within roots receiving growth-promoting treatments. Compared to the untreated control, endophyte-enriched communities receiving urea and/or biofertilizer treatments were significantly reduced in OTU richness and relative read abundances. Several unique OTUs were enriched in each of the treatment communities. These alterations in structure of root-associated communities suggest dynamic interactions in the host plant microbiome, some of which may influence the well-documented positive synergistic impact of rhizobial biofertilizer inoculation plus low doses of urea-N fertilizer on growth promotion of rice, considered as one of the world's most important food crops.

Halomonas Rhizobacteria of Avicennia marina of Indian Sundarbans Promote Rice Growth Under Saline and Heavy Metal Stresses Through Exopolysaccharide Production.

The Halomonas species isolated from the rhizosphere of the true mangrove Avicennia marina of Indian Sundarbans showed enhanced rice growth promotion under combined stress of salt and arsenic in pot assay. Interestingly, under abiotic stress conditions, Halomonas sp. Exo1 was observed as an efficient producer of exopolysaccharide. The study revealed that salt triggered exopolysaccharide production, which in turn, increased osmotic tolerance of the strain. Again, like salt, presence of arsenic also caused increased exopolysaccharide production that in turn sequestered arsenic showing a positive feedback mechanism. To understand the role of exopolysaccharide in salt and arsenic biosorption, purified exopolysaccharide mediated salt and arsenic sequestration were studied both under in vivo and in vitro conditions and the substrate binding properties were characterized through FT-IR and SEM-EDX analyses. Finally, observation of enhanced plant growth in pot assay in the presence of the strain and pure exopolysaccharide separately, confirmed direct role of exopolysaccharide in plant growth promotion.

Glucose dehydrogenase gene containing phosphobacteria for biofortification of Phosphorus with growth promotion of rice

Phosphorus (P) is an essential plant nutrient, but often limited in soils for plant uptake. A major economic constraint in the rice production is excessive use of chemical fertilizers to meet the P requirement. Bioaugmentation of phosphate solubilizing rhizobacteria (PSB) can be used as promising alternative. In the present study 11 mineral PSB were isolated from Basmati rice growing areas of Pakistan. In broth medium, PSB solubilized tricalcium phosphate (27–354 μg mL−1) with concomitant decrease in pH up to 3.6 due to the production of different organic acids, predominantly gluconic acid. Of these, 4 strains also have ability to mineralize phytate (245–412 μg mL−1). Principle component analysis showed that the gluconic acid producing PSB strains (Acinetobacter sp. MR5 and Pseudomonas sp. MR7) have pronounced effect on grain yield (up to 55%), plant P (up to 67%) and soil available P (up to 67%), with 20% reduced fertilization. For simultaneous validation of gluconic acid production by MR5 and MR7 through PCR, new specific primers were designed to amplify gcd, pqqE, pqqC genes responsible for glucose dehydrogenase (gcd) mediated phosphate solubilization. These findings for the first time demonstrated Acinetobacter soli as potent P solubilizer for rice and expands our knowledge about genus specific pqq and gcd primers. These two gcd containing PSB Acinetobacter sp. MR5 (DSM 106631) and Pseudomonas sp. MR7 (DSM 106634) submitted to German culture collection (DSMZ), serve as global valuable pool to significantly increase the P uptake, growth and yield of Basmati rice with decreased dependence on chemical fertilizer in P deficit agricultural soils.

Empowering rice seedling growth by endophytic Bradyrhizobium sp. SUTN9-2.

Bradyrhizobium sp. strain SUTN9-2 was confirmed as rice endophytic bacteria and also as rice growth promotion agent. SUTN9-2 showed the capability of plant growth promotion characteristics, such as indole-3-acetic acid (IAA) and 1-amino-cyclopropane-1-carboxylic acid (ACC) deaminase productions and nitrogen fixation. In this study, the ability of SUTN9-2 to stimulate rice growth was investigated at different stages with N-free and NH4 NO3 under invivo condition. The rice dry weight and chlorophyll content could be enhanced when SUTN9-2 was inoculated in N-free, especially at seedling stage (7 and 14 dai). The rice dry weight was also increased when SUTN9-2 was inoculated with NH4 NO3 at 7 and14 dai. The results of quantitative analysis of IAA and ACC deaminase were inconsistent with the expression of genes involved in IAA (nit) and ACC deaminase (acdS) productions. This inconsistently could implied that IAA and ACC deaminase produced from SUTN9-2 do not directly affect rice growth, but other factors resulting from the production of IAA and ACC deaminase could be involved. Moreover, the expression of genes involved in nitrogen fixation (nifH and nifV) of SUTN9-2 was also induced in rice tissues. This finding suggested that rice growth promotion may be supported by NH4 NO3 together with nitrogen fixation by SUTN9-2. SIGNIFICANCE AND IMPACT OF THE STUDY: Indole-3-acetic acid, 1-amino-cyclopropane-1-carboxylic acid deaminase productions and nitrogen fixation may play important roles in rice growth promotion by endophytic SUTN9-2, especially at early rice seedling growth stage, which has the potential to be used as rice seedling growth promoter in the system of rice intensification.

Prospects of endophyllic Pseudomonas aeruginosa as a biocide against sheath blight and growth promotion of rice

Ecofriendly ecto-/endospheric plant growth promoting microbes (PGPM) and biocides would sustain rice growth and development, save from diseases and pests to keep up rice production for food security and protect the ecosphere. As the pseudomonads are most versatile microbes, the PGP and biocidal potential of a multifaceted endophyllic pseudomonad (JE1) of rice were evaluated. Phenotyping, FAME and 16S rDNA homology confirmed identity of the organism as Pseudomonas aeruginosa. The organism possessed the plant growth promotion (PGP) functions like P solubilization (536.96 μg/ml), ACC, siderophore (7.77 mg/g dr. wt.), antimicrobial metabolite viz. HCN (0.035 A625/ml) etc. and antimicrobial enzyme viz. pectinase, tributyrin hydrolase, gelatinase and cellulase. Besides, the organism inhibited growth of rice sheath blight (ShB) pathogen Rhizotocnia solani by 35.89%. The PGP and antimicrobial functionalities proved versatility of the P. aeruginosa (JE1) and potential for overall improvement/sustenance of rice health and production.

Bioagents and silicon promoting fast early upland rice growth.

Upland rice can overcome major challenges through the insertion of silicate fertilization and the presence of plant growth-promoting microorganisms (PGPMs) during its cultivation, as these factors promote an increase in vigor and plant disease resistance. Two consecutive experiments were conducted to evaluate the beneficial effects of silicon fertilization combined with the PGPM, Pseudomonas fluorensces, Burkholderia pyrrocinia, and a pool of Trichoderma asperellum, in upland rice seedlings, cultivar BRS Primavera CL: (a) E1, selecting PGPM type and Si doses for rice growth promotion and leaf blast supression, and (b) E2, evaluating physiological characteristics correlated with mechanisms involved in the higher vegetative growth in highlighted treatments from E1. In E1, 2Sitha-1 combined with the application of T. asperellum pool or PGPM mixture increased 54% in root dry matter biomass and 35 and 65% in shoot and root lengths, respectively; it also suppressed 99% of rice blast severity. In E2, shoot and root dry matter biomass and length, photosynthetic rate, water use efficiency, total soluble sugar, and chloroplastidic pigments were superior in BRS Primavera CL seedlings treated with 2Sitha-1 and T. asperellum pool or PGPM mixture. Higher salicilic and jasmonic acid levels were found in seedlings treated with Si and T. asperellum pool, individually. These physiological characteristics may explain, in part, the higher vigor of upland rice seedlings promoted by the synergistic effect between silicate fertilization and beneficial microorganisms.

Potential of Rice Stubble as a Reservoir of Bradyrhizobial Inoculum in Rice-Legume Crop Rotation.

Bradyrhizobium encompasses a variety of bacteria that can live in symbiotic and endophytic associations with leguminous and nonleguminous plants, such as rice. Therefore, it can be expected that rice endophytic bradyrhizobia can be applied in the rice-legume crop rotation system. Some endophytic bradyrhizobial strains were isolated from rice (Oryza sativa L.) tissues. The rice biomass could be enhanced when supplementing bradyrhizobial strain inoculation with KNO3, NH4NO3, or urea, especially in Bradyrhizobium sp. strain SUTN9-2. In contrast, the strains which suppressed rice growth were photosynthetic bradyrhizobia and were found to produce nitric oxide (NO) in the rice root. The expression of genes involved in NO production was conducted using a quantitative reverse transcription-PCR (qRT-PCR) technique. The nirK gene expression level in Bradyrhizobium sp. strain SUT-PR48 with nitrate was higher than that of the norB gene. In contrast, the inoculation of SUTN9-2 resulted in a lower expression of the nirK gene than that of the norB gene. These results suggest that SUT-PR48 may accumulate NO more than SUTN9-2 does. Furthermore, the nifH expression of SUTN9-2 was induced in treatment without nitrogen supplementation in an endophytic association with rice. The indole-3-acetic acid (IAA) and 1-amino-cyclopropane-1-carboxylic acid (ACC) deaminase produced in planta by SUTN9-2 were also detected. Enumeration of rice endophytic bradyrhizobia from rice tissues revealed that SUTN9-2 persisted in rice tissues until rice-harvesting season. The mung bean (Vigna radiata) can be nodulated after rice stubbles were decomposed. Therefore, it is possible that rice stubbles can be used as an inoculum in the rice-legume crop rotation system under both low- and high-organic-matter soil conditions.IMPORTANCE This study shows that some rice endophytic bradyrhizobia could produce IAA and ACC deaminase and have a nitrogen fixation ability during symbiosis inside rice tissues. These characteristics may play an important role in rice growth promotion by endophytic bradyrhizobia. However, the NO-producing strains should be of concern due to a possible deleterious effect of NO on rice growth. In addition, this study reports the application of endophytic bradyrhizobia in rice stubbles, and the rice stubbles were used directly as an inoculum for a leguminous plant (mung bean). The degradation of rice stubbles leads to an increased number of SUTN9-2 in the soil and may result in increased mung bean nodulation. Therefore, the persistence of endophytic bradyrhizobia in rice tissues can be developed to use rice stubbles as an inoculum for mung bean in a rice-legume crop rotation system.

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Assessment of Rice Associated Bacterial Ability to Enhance Rice Seed Germination and Rice Growth Promotion

ABSTRACT The application of beneficial bacteria has recently been used for sustainable agriculture. In current research, 71 bacterial isolates were obtained from rice plant and the rhizosphere soil of different paddy fields in Guilan province, Iran. After primitive investigation, 40 bacteria with typical predominant characteristics were selected. By PCR-RFLP of their 16S r-DNA gene, 8 Operational Taxonomic Units (OTUs) totally consisted of 33 isolates were obtained. From all of them, 8 isolates were selected for rice seed germination experiment, then, effective isolates were used for pot experiment to evaluate their ability for promoting rice growth. All of them were able to increase rice growth and yield, but in different potential. These tested isolates were identified as Alcaligenes faecalis (DEp8, O1R4), Pantoea ananatis (AEn1), Bacillus vietnamensis (MR5), Bacillus idriensis (MR2) and Stenotrophomonas maltophilia by partial sequencing of their 16S r-DNA gene. Among them, AEn1 and MR5 produced indole-3- acetic acid (IAA) in larger amounts than the other isolates and the isolates AEn1 and O1R4 were able to solubilize phosphate in higher amounts. According to the results obtained, it can be concluded that AEn1, O1R4 and MR5 can be considered as bacterial inoculants to use as alternatives for chemical fertilizers.

Effect of microorganisms on reducing cadmium uptake and toxicity in rice (Oryza sativa L.).

This study analyzed the application of three microorganism inoculums, including Bacillus subtilis, Bacillus cereus, and commercial effective microorganism (EM) solution in order to determine cadmium (Cd) reduction in rice (Oryza sativa L.) and rice growth promotion. Rice was grown in Cd-contaminated soil (120mg/kg) and selected microorganisms were inoculated. Cd concentration and rice weight were measured at 45 and 120days of the experiment. The result showed that B. subtilis inoculation into rice can highly reduce Cd accumulation in every part of rice roots and shoots (45days), and grains (120days). This species can effectively absorb Cd compared to other inoculums, which might be the main mechanism to reduce Cd transportation in rice plants. Interestingly, plants that were inoculated with bacterial species individually harbored higher calcium (Ca) and magnesium (Mg) accumulation; B. subtilis-inoculated plants had the highest levels of Ca and Mg compared to other inoculated ones. Moreover, inoculating rice plants with these microorganisms could increase the dry weight of the plant and protect them from Cd stress because all the inoculums presented the ability to solubilize phosphate, produce indole-3-acetic acid (IAA), and control ethylene levels by 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. After 120days, quantification of each inoculum by quantitative polymerase chain reaction (qPCR) confirmed the root colonization of bacterial species, with B. subtilis showing higher 16S rRNA gene copy numbers than the other species. B. subtilis was classified as a non-human pathogenic strain, reassuring the safe application of this plant growth-promoting bacterium as a crop inoculum.

Rhizosphere Bacteria for Biocontrol of Bacterial Blight and Growth Promotion of Rice

Several bacterial strains were isolated from different rhizospheres. Among these, strain PDY7 exhibited strong antibacterial activity against the rice bacterial blight (BB) pathogen Xanthomonas oryzae pv. oryzae (Xoo) by the laboratory dual plate assays. The antibacterial property of the strain PDY7 was further investigated for the production of 2,4-diacetylphloroglucinol (DAPG), which amplified a characteristic of 629-bp DNA fragment by PCR-based screening method using phlD primers. The application of phlD positive strains was carefully evaluated for disease control and growth promotion of rice plants under field conditions. The selected strain PDY7 suppressed the rice BB by 58.83% and 51.88% under glass house and field conditions, respectively. In addition, the strain PDY7 showed significant two-fold increase in root length (18.08 cm), shoot length (29.81 cm), and grain yield (96.07 g). Strain PDY7 promoted the growth of rice plants by production of indole-3-acetic acid (IAA), which was determined by high performance liquid chromatography (HPLC) analysis. Our findings suggest that PDY7 belongs to the P. fluorescens group and can serve as potential biocontrol of BB as well as biofertilizer agent for growth promotion of rice.

Growth Promotion of Rice (Oryza sativa L.) Seedlings by Application of L-β-phenyllactic Acid

Growth Promotion of Rice (Oryza sativa L.) Seedlings by Application of L-β-phenyllactic Acid

Growth promotion of rice by inoculation of acid-tolerant, N2-fixing bacteria isolated from acid sulfate paddy soil in South Kalimantan, Indonesia

In South Kalimantan, Indonesia, a large area of rice paddy field is suffered with acid sulfate soil and the productivity of rice is supposed to be low. While in some paddy fields we have found that the yield of rice is larger than 5 ton ha-1 without any fertilizer. There assumed to be the contribution of nitrogen fixing bacteria for rice production by biological nitrogen fixation (BNF) under those low pH condition. We have screened bacteria from the rhizosphere and rhizoplane of local rice plant growing in natural field based on their growth on nitrogen free medium. We have obtained 26 isolates, and the majority of isolated bacteria belonged to the β-proteobacteria (34.6 %) and others are α-proteobacteria (19.2 %), γ-proteobacteria (0.38 %), Bacilli (19.2 %), and Actinobacteria (23.1 %) based on their 16S rDNA sequence. We have determined their nitrogenase activity and the existence of nifH gene by using PCR technique. Though all of the isolates can grow on nitrogen free medium, only five isolates belong to β-proteobacteria have high nitrogenase activity. The existence of nifH gene was also confirmed in theses five isolates by using PCR technique. We presume that one of the mechanisms of the adaptation of these bacteria under acid sulfate soil is changing the surrounding pH. In bacterial culture medium, the change of pH during the incubation of these isolates was deeply regulated by the existence of several organic acid anions. In rice culture with soil experiments, under initial soil pH 3.5 condition, though rice growth was inhibited with the addition of 500 μM Al, inoculation with obtained isolate significantly alleviated Al stress. It is suggested that beneficial interactions of rice and free living nitrogen fixing bacteria might be operating to reducing root Al stress in acid sulfate soil.

Effects of chloride and sulfate application on root growth of rice

In several studies, the beneficial effects of the application of chloride on root growth have been reported. However, the effect of chloride application on the morphology of roots has not been studied extensively. The effects of the use of chloride salts and sulfate salts on the growth of rice (Oryza sativa L.) until the 7-leaf stage were investigated in soil and water culture experiments. In the soil culture experiments, the root biomass in the chloride treatment showed a 58% increase compared with the sulfate treatment. Total root length, top root ratio (T / R ratio) and root length per primary root revealed the existence of root growth promotion by chloride. In the water culture experiments, root growth was also stimulated by chloride, as in the soil culture experiments. In order to analyze the effect of chloride application, the ion composition and pH of the soil solution or water culture solution were used to determine the amounts of ion species in the solution using the MINTEQA2 computer program, and the results were applied to estimate the osmotic pressure of these solutions. The osmotic pressure of chloride salts was obviously higher than that of sulfate salts based on van't Hoff's law of osmotic pressure and a positive correlation between the osmotic pressure and root length was obtained. The results suggest that the higher osmotic pressure induced by chloride would be involved in the root growth promotion of rice.

Herbaspirillum colonization increases growth and nitrogen accumulation in aluminium‐tolerant rice varieties

Summary • Varieties of rice (Oryza sativa) differing in tolerance to aluminium (Al) were evaluated for their N-fixation ability after inoculation with a gusA-marked strain of Herbaspirillum seropedicae Z67. • Under axenic conditions, by 30 d, inoculation resulted in enhanced nitrogenase activity, d. wt, total N and total C content only in the Al-tolerant varieties, and one (cv. Moroberekan) showed significantly more 15N2 incorporation than an Al-sensitive variety (‘IR45’). There were no differences in the number of the bacteria colonizing the different varieties, but the Al-tolerant ones secreted larger amounts of C in their root exudates, and bacteria colonizing the roots of cv. Moroberekan strongly expressed gusA and NifH proteins. • Under glasshouse conditions, by 30 d, inoculation resulted in increased growth of both cvs IR45 and Moroberekan, but the latter showed significantly greater nitrogenase activity and 15N dilution. In a long-term experiment, by 120 d, cv. Moroberekan showed a significant increase in N content after inoculation. • Herbaspirilla were localized on and within roots and aerial parts of cvs Moroberekan and IR45 under both growth conditions. The role of N fixation in growth promotion of rice by H. seropedicae is discussed in terms of availability of C.

Growth-promotion of plants with depolymerized alginates by irradiation

Alginate has been degraded by gamma-ray irradiation from a Co-60 source in liquid state (aqueous solution) and in solid state (powder form). The irradiated alginate with a molecular weight less than 10 4 shows a strong effect on the growth-promotion of rice and peanut. Low concentration of degraded alginate from 4% solution irradiated at 100 kGy is effective for the growth-promotion of plants and the suitable concentrations are ca 50 ppm for rice and ca 100 ppm for peanut.

Plant Growth Promotional Effect of <i>Azotobacter chroococcum</i>, <i>Piriformospora indica</i> and Vermicompost on Rice Plant

The activities of rhizospheric organisms have been well recognized in non-leguminous plants such as tropical grasses, rice and maize. Such activities include nitrogen fixation, phosphate solubilization and mineralization that are beneficial for the overall growth and development of the plant. An experiment was carried out to study the growth promotion of rice (Oryza sativa L.) due to dual inoculation of Azotobacter chroococcum and Piriformospora indica along with vermicompost. The effects on shoot length, root length, fresh shoot and root weight, dry shoot and root weight, and panicle number on 45th day and 90th day were investigated. In both the stages these parameters of all the treated plants were significantly (P<0.05) greater than the uninoculated control. Dual inoculated plants in presence of vermicompost gave better positive effects on both 45th day and 90th day, in comparison to single inoculation of A. chroococcum, P. indica and vermicompost. However, A. chroococcum treated plants showed significant decrease in dry root weight as compared to control plants on 90th day observation. This suggested that dual inoculation of A. chroococcum and P. indica had beneficiary response on growth of rice plant. Key words: rice; Azotobacter chroococcum; Piriformospora indica; vermicompost; mycorrhizae nitrogen fixation DOI: 10.3126/njst.v9i0.3170 Nepal Journal of Science and Technology 9 (2008) 85-90