Plant Growth Processes Research Articles

Genome-Wide Identification, Characterization, and Expression Analysis of the HD-Zip Gene Family in Lagerstroemia for Regulating Plant Height.

The Homeodomain leucine zipper (HD-Zip) family of transcription factors is crucial in helping plants adapt to environmental changes and promoting their growth and development. Despite research on the HD-Zip family in various plants, studies in Lagerstroemia (crape myrtle) have not been reported. This study aimed to address this gap by comprehensively analyzing the HD-Zip gene family in crape myrtle. This study identified 52 HD-Zip genes in the genome of Lagerstroemia indica, designated as LinHDZ1-LinHDZ52. These genes were distributed across 22 chromosomes and grouped into 4 clusters (HD-Zip I-IV) based on their phylogenetic relationships. Most gene structures and motifs within each cluster were conserved. Analysis of protein properties, gene structure, conserved motifs, and cis-acting regulatory elements revealed diverse roles of LinHDZs in various biological contexts. Examining the expression patterns of these 52 genes in 6 tissues (shoot apical meristem, tender shoot, and mature shoot) of non-dwarf and dwarf crape myrtles revealed that 2 LinHDZs (LinHDZ24 and LinHDZ14) and 2 LinHDZs (LinHDZ9 and LinHDZ35) were respectively upregulated in tender shoot of non-dwarf crape myrtles and tender and mature shoots of dwarf crape myrtles, which suggested the important roles of these genes in regulate the shoot development of Lagerstroemia. In addition, the expression levels of 2 LinHDZs (LinHDZ23 and LinHDZ34) were significantly upregulated in the shoot apical meristem of non-dwarf crape myrtle. These genes were identified as key candidates for regulating Lagerstroemia plant height. This study enhanced the understanding of the functions of HD-Zip family members in the growth and development processes of woody plants and provided a theoretical basis for further studies on the molecular mechanisms underlying Lagerstroemia plant height.

Transcriptional Profiling of BpWRKY49 Reveals Its Role as a Master Regulator in Stress Signaling Pathways in Birch (Betula platyphylla)

The WRKY family of transcription factors (TFs) is one of the most diverse families in plants, playing crucial roles in various plant growth and stress response processes. Asian white birch (Betula platyphylla) is a globally distributed tree species that holds ecological, medical, and economic significance. However, the regulatory mechanisms of WRKY TFs in birch remain poorly understood. Herein, we cloned and characterized the BpWRKY49 gene from birch. Through bioinformatics analyses, we revealed the potential involvement of BpWRKY49 in both biotic and abiotic stress responses. In addition, BpWRKY49 was found to be localized in the nucleus and exhibited transcriptional activity in yeast. Transactivation assays further confirmed that BpWRKY49 exhibited transcriptional activity at its C-terminal end. Notably, our binding specificity assays demonstrated the specific interaction of BpWRKY49 with the W-box cis element in vitro. Furthermore, tissue-specific expression analysis demonstrated that BpWRKY49 exhibited the highest expression level in the roots. Real-time quantitative PCR (RT-qPCR) analysis of birch plants subjected to salt and drought treatments revealed that BpWRKY49 displayed significant 30-fold and 10-fold upregulations under salt and drought stress conditions, respectively. DAP-seq analysis of BpWRKY49 identified a total of 21,832 peaks, with 3477 occurring in the promoter region of genes. Gene ontology (GO) enrichment analysis highlighted prominent terms related to defense against biotic stress, followed by terms associated with abiotic stress and development. Y1H assays of three genes provided evidence for the binding ability of BpWRKY49 to the promoters of BpPUB21, BpBTL15, and BpHIP47 in vitro. Collectively, our findings strongly suggest that BpWRKY49 possesses diverse functions and may activate multiple genes to contribute to various biological processes, including salt stress tolerance, in birch.

Genome wide characterization and expression analysis of CrRLK1L gene family in wheat unravels their roles in development and stress-specific responses.

Catharanthus roseus receptor-like kinase 1-like (CrRLK1L) genes encode a subfamily of receptor-like kinases (RLK) that regulate diverse processes during plant growth, development, and stress responses. The first CrRLK1L was identified from the Catharanthus roseus, commonly known as Madagascar periwinkle. Subsequently, CrRLK1L gene families have been characterized in many plants. The genome of T. aestivum encodes 15 CrRLK1L genes with 43 paralogous copies, with three homeologs each, except for -2-D and -7-A, which are absent. Chromosomal localization analysis revealed a markedly uneven distribution of CrRLK1L genes across seven different chromosomes, with chromosome 4 housing the highest number of genes, while chromosome 6 lacked any CrRLK1L genes. Tissue-specific gene expression analysis revealed distinct expression patterns among the gene family members, with certain members exhibiting increased expression in reproductive tissues. Gene expression analysis in response to various abiotic and biotic stress conditions unveiled differential regulation of gene family members. Cold stress induces CrRLK1Ls -4-B and -15-A while downregulating -3-A and -7B. Drought stress upregulates -9D, contrasting with the downregulation of -7D. CrRLK1L-15-B and -15-D were highly induced in response to 1 hr of heat, and combined drought and heat stress, whereas -10-B is downregulated. Similarly, in response to NaCl stress, only CrRLK1L1 homeologs were induced. Fusarium graminearum and Claviceps purpurea inoculation induces homeologs of CrRLK1L-6 and -7. The analysis of cis-acting elements in the promoter regions identified elements crucial for plant growth and developmental processes. This comprehensive genome-wide analysis and expression study provides valuable insights into the essential functions of CrRLK1L members in wheat.

Ratiometric gibberellin biosensors for the analysis of signaling dynamics and metabolism in plant protoplasts.

Gibberellins (GAs) are major regulators of developmental and growth processes in plants. Using the degradation-based signaling mechanism of GAs, we have built transcriptional regulator (DELLA)-based, genetically encoded ratiometric biosensors as proxies for hormone quantification at high temporal resolution and sensitivity that allow dynamic, rapid and simple analysis in a plant cell system, i.e. Arabidopsis protoplasts. These ratiometric biosensors incorporate a DELLA protein as a degradation target fused to a firefly luciferase connected via a 2A peptide to a renilla luciferase as a co-expressed normalization element. We have implemented these biosensors for all five Arabidopsis DELLA proteins, GA-INSENSITIVE, GAI; REPRESSOR-of-ga1-3, RGA; RGA-like1, RGL1; RGL2 and RGL3, by applying a modular design. The sensors are highly sensitive (in the low pm range), specific and dynamic. As a proof of concept, we have tested the applicability in three domains: the study of substrate specificity and activity of putative GA-oxidases, the characterization of GA transporters, and the use as a discrimination platform coupled to a GA agonists' chemical screening. This work demonstrates the development of a genetically encoded quantitative biosensor complementary to existing tools that allow the visualization of GA in planta.

StMAPKK5 Positively Regulates Response to Drought and Salt Stress in Potato.

MAPKKs, as one of the main members of the mitogen-activated protein kinase (MAPK) cascade pathway, are located in the middle of the cascade and are involved in many physiological processes of plant growth and development, as well as stress tolerance. Previous studies have found that StMAPKK5 is responsive to drought and salt stress. To further investigate the function and regulatory mechanism of StMAPKK5 in potato stress response, potato variety 'Atlantic' was subjected to drought and NaCl treatments, and the expression of the StMAPKK5 gene was detected by qRT-PCR. StMAPKK5 overexpression and RNA interference-mediated StMAPKK5 knockdown potato plants were constructed. The relative water content, superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) activities, as well as proline (Pro) and malondialdehyde (MDA) contents of plant leaves, were also assayed under drought and NaCl stress. The StMAPKK5 interacting proteins were identified and validated by yeast two-hybrid (Y2H) and bimolecular fluorescence complementation (BiFC). The results showed that the expression of StMAPKK5 was significantly up-regulated under drought and NaCl stress conditions. The StMAPKK5 protein was localized in the nucleus, cytoplasm, and cell membrane. The expression of StMAPKK5 affected the relative water content, the enzymatic activities of SOD, CAT, and POD, and the proline and MDA contents of potatoes under drought and salt stress conditions. These results suggest that StMAPKK5 plays a significant role in regulating drought and salt tolerance in potato crop. Yeast two-hybrid (Y2H) screening identified four interacting proteins: StMYB19, StZFP8, StPUB-like, and StSKIP19. BiFC confirmed the authenticity of the interactions. These findings suggest that StMAPKK5 is crucial for potato growth, development, and response to adversity.

Auxin resistant 2 and short hypocotyl 2 regulate cotton fiber initiation and elongation.

Auxin, a pivotal regulator of diverse plant growth processes, remains central to development. The auxin-responsive genes auxin/indole-3-acetic acids (AUX/IAAs) are indispensable for auxin signal transduction, which is achieved through intricate interactions with auxin response factors (ARFs). Despite this, the potential of AUX/IAAs to govern the development of the most fundamental biological unit, the single cell, remains unclear. In this study, we harnessed cotton (Gossypium hirsutum) fiber, a classic model for plant single-cell investigation, to determine the complexities of AUX/IAAs. Our research identified 2 pivotal AUX/IAAs, auxin resistant 2 (GhAXR2) and short hypocotyl 2 (GhSHY2), which exhibit opposite control over fiber development. Notably, suppressing GhAXR2 reduced fiber elongation, while silencing GhSHY2 fostered enhanced fiber elongation. Investigating the mechanistic intricacies, we identified specific interactions between GhAXR2 and GhSHY2 with distinct ARFs. GhAXR2's interaction with GhARF6-1 and GhARF23-2 promoted fiber cell development through direct binding to the AuxRE cis-element in the constitutive triple response 1 promoter, resulting in transcriptional inhibition. In contrast, the interaction of GhSHY2 with GhARF7-1 and GhARF19-1 exerted a negative regulatory effect, inhibiting fiber cell growth by activating the transcription of xyloglucan endotransglucosylase/hydrolase 9 and cinnamate-4-hydroxylase. Thus, our study reveals the intricate regulatory networks surrounding GhAXR2 and GhSHY2, elucidating the complex interplay of multiple ARFs in AUX/IAA-mediated fiber cell growth. This work enhances our understanding of single-cell development and has potential implications for advancing plant growth strategies and agricultural enhancements.

Influence of Foliar Application of Microelements on Yield and Yield Components of Spring Malting Barley

Barley is an economically important plant cultivated primarily for animal feed and in the brewing industry for the production of barley malt. Climate changes and an increase in grain demand result in a constant need to improve the volume and stability of cereal species yields and better use the potential of cultivars. In cereal production, an important aspect is the use of microelements, especially by foliar spraying. Microelements, as components or enzyme activators, play a significant role in plant growth and metabolic processes occurring in the cell. As a consequence, their availability is a factor determining plant development. The aim of this study was to determine the effect of foliar fertilization with selected microelements on the yield of two-row malting barley cultivars. In 2019–2021, a two-factor field experiment with barley was conducted in south-eastern Poland. The experimental factors were three spring barley cultivars (Baryłka, KWS Irina, and RGT Planet) of the brewing type and four single-component micronutrient fertilizers containing copper (Cu), manganese (Mn), molybdenum (Mo), and zinc (Zn). The foliar application of microelements resulted in improvements in selected elements of the yield structure and an increase in grain yield, and the effect depended on the fertilization applied. The highest grain yield was obtained from plots where fertilizer with Mo or Zn was used. Barley plants sprayed with Mo fertilizer developed the longest spikes and were characterized by the highest number of productive tillers per plant. The foliar application of Zn resulted in the formation of the highest number of spikes per unit area and grain uniformity. The RGT Planet cultivar was characterized by higher values of the measured parameters compared to Baryłka and KWS Irina.

Активность липополисахарида типового штамма Azospirillum palustre B2 в отношении проростков пшеницы (Triticum aestivum L.)

Lipopolysaccharide is the main structural component of the outer membrane of Gram-negative bacteria, which can also be a part of extracellular polymeric substances. Lipopolysaccharides of bacteria that stimulate the growth and development of plants belong to the group of molecules that form a microbe-associated molecular pattern (MAMP). These glycoconjugates of both symbiotic and phytopathogenic bacteria induce the activation of immune responses in plants. However, the level of plant response under the influence of symbiont lipopolysaccharides differs significantly, also due to their structural features, which make it possible to bypass or weaken the reactions of innate autoimmunity. In this paper, we present the results of the analysis of the reactions of wheat seedlings Triticum aestivum L. after incubation with lipopolysaccharide of associative bacteria Azospirillum palustre B2(T). Incubation of wheat seedlings in the presence of A. palustre B2 lipopolysaccharide for three days led to the activation of plant growth processes, namely an increase in the length of shoots, roots, the area of the first leaf, and a change in the content of pigments in the leaves.

The mechanism behind tenuazonic acid-mediated inhibition of plant plasma membrane H+-ATPase and plant growth

The Increasing prevalence of herbicide-resistant weeds has led to a search for new herbicides that target plant growth processes differing from those targeted by current herbicides. In recent years, some studies have explored the use of natural compounds from microorganisms as potential new herbicides. We previously demonstrated that tenuazonic acid (TeA) from the phytopathogenic fungus Stemphylium loti inhibits the plant plasma membrane (PM) H+-ATPase, representing a new target for herbicides. In this study, we further investigated the mechanism by which TeA inhibits PM H+-ATPase and the effect of the toxin on plant growth using Arabidopsis thaliana. We also studied the biochemical effects of TeA on the PM H+-ATPases from spinach (Spinacia oleracea) and A. thaliana (AHA2) by examining PM H+-ATPase activity under different conditions and in different mutants. Treatment with 200 μM TeA induced cell necrosis in larger plants, and treatment with 10 μM TeA almost completely inhibited cell elongation and root growth in seedlings. We show that the isoleucine backbone of TeA is essential for inhibiting the ATPase activity of the PM H+-ATPase. Additionally, this inhibition depends on the C-terminal domain of AHA2, and TeA binding to PM H+-ATPase requires the Regulatory Region I of the C-terminal domain in AHA2. TeA likely has a higher binding affinity towards PM H+-ATPase than the phytotoxin fusicoccin. Finally, our findings show that TeA retains the H+-ATPase in an inhibited state, suggesting that it could act as a lead compound for creating new herbicides targeting the PM H+-ATPase.

Genome-Wide Identification and Expression Analysis of the PUB Gene Family in Zoysia japonica under Salt Stress.

The U-box protein family of ubiquitin ligases is important in the biological processes of plant growth, development, and biotic and abiotic stress responses. Plants in the genus Zoysia are recognized as excellent warm-season turfgrass species with drought, wear and salt tolerance. In this study, we conducted the genome-wide identification of plant U-box (PUB) genes in Zoysia japonica based on U-box domain searching. In total, 71 ZjPUB genes were identified, and a protein tree was constructed of AtPUBs, OsPUBs, and ZjPUBs, clustered into five groups. The gene structures, characteristics, cis-elements and protein interaction prediction network were analyzed. There were mainly ABRE, ERE, MYB and MYC cis-elements distributed in the promoter regions of ZjPUBs. ZjPUBs were predicted to interact with PDR1 and EXO70B1, related to the abscisic acid signaling pathway. To better understand the roles of ZjPUBs under salt stress, the expression levels of 18 ZjPUBs under salt stress were detected using transcriptome data and qRT-PCR analysis, revealing that 16 ZjPUBs were upregulated in the roots under salt treatment. This indicates that ZjPUBs might participate in the Z. japonica salt stress response. This research provides insight into the Z. japonica PUB gene family and may support the genetic improvement in the molecular breeding of salt-tolerant zoysiagrass varieties.

Silencing of early auxin responsive genes MdGH3-2/12 reduces the resistance to Fusarium solani in apple

Apple replant disease (ARD) has led to severe yield and quality reduction in the apple industry. Fusarium solani (F. solani) has been identified as one of the main microbial pathogens responsible for ARD. Auxin (indole-3-acetic acid, IAA), an endogenous hormone in plants, is involved in almost all plant growth and development processes and plays a role in plant immunity against pathogens. Gretchen Hagen3 (GH3) is one of the early/primary auxin response genes. The aim of this study was to evaluate the function of MdGH3-2 and MdGH3-12 in the defense response of F. solani by treating MdGH3-2/12 RNAi plants with F. solani. The results show that under F. solani infection, RNAi of MdGH3-2/12 inhibited plant biomass accumulation and exacerbated root damage. After inoculation with F. solani, MdGH3-2/12 RNAi inhibited the biosynthesis of acid-amido synthetase. This led to the inhibition of free IAA combining with amino acids, resulting in excessive free IAA accumulation. This excessive free IAA altered plant tissue structure, accelerated fungal hyphal invasion, reduced the activity of antioxidant enzymes (SOD, POD and CAT), increased the reactive oxygen species (ROS) level, and reduced total chlorophyll content and photosynthetic ability, while regulating the expression of PR-related genes including PR1, PR4, PR5 and PR8. It also changed the contents of plant hormones and amino acids, and ultimately reduced the resistance to F. solani. In conclusion, these results demonstrate that MdGH3-2 and MdGH3-12 play an important role in apple tolerance to F. solani and ARD.

Plant physiology: RAF kinases claim a conserved role in rapid auxin responses

A recent study spotlights B-RAF kinases as central mediators of rapid auxin responses across diverse plant species. Coupled with other current studies, this discovery illuminates the essential role of B-RAF kinases in orchestrating growth, stress responses, and various other biological processes in plants.

Identification and effectiveness of biological agents against pathogens causes of white root fungus disease Rigidoporus sp. in vitro

Diseases affect the process of plant growth. One of the pathogens that causes white root fungal disease, Rigidoporus sp., can be transmitted through root contact. This study aims to determine the types of biological agents and their effectiveness in inhibiting Rigidoporus sp. in vitro. Identification is carried out macroscopically and microscopically. Inhibition testing was conducted on Potato Dextrose Agar (PDA) media, followed by a variance test with a One-Factor Complete Random Design. The results showed that Trichoderma sp. with a rejuvenation age of 8 days (T8) was the most effective in inhibiting the growth of Rigidoporus sp. and had the highest percentage at 71%.

Non-destructive, whole-plant phenotyping reveals dynamic changes in water use efficiency, photosynthesis, and rhizosphere acidification of sorghum accessions under osmotic stress.

Noninvasive phenotyping can quantify dynamic plant growth processes at higher temporal resolution than destructive phenotyping and can reveal phenomena that would be missed by end-point analysis alone. Additionally, whole-plant phenotyping can identify growth conditions that are optimal for both above- and below-ground tissues. However, noninvasive, whole-plant phenotyping approaches available today are generally expensive, complex, and non-modular. We developed a low-cost and versatile approach to noninvasively measure whole-plant physiology over time by growing plants in isolated hydroponic chambers. We demonstrate the versatility of our approach by measuring whole-plant biomass accumulation, water use, and water use efficiency every twodays on unstressed and osmotically stressed sorghum accessions. We identified relationships between root zone acidification and photosynthesis on whole-plant water use efficiency over time. Our system can be implemented using cheap, basic components, requires no specific technical expertise, and should be suitable for any non-aquatic vascular plant species.

OsCSN2 orchestrates Oryza sativa L. growth and development through modulation of the GA and BR pathways.

The COP9 signalosome (CSN) is a conserved protein complex found in higher eukaryotes, consisting of eight subunits, and it plays a crucial role in regulating various processes of plant growth and development. Among these subunits, CSN2 is one of the most conserved components within the COP9 signalosome complex. Despite its prior identification in other species, its specific function in Oryza sativa L. (Rice) has remained poorly understood. In this study, we investigated the role of CSN2 in rice using gene editing CRISPR/Cas9 technology and overexpression techniques. We created two types of mutants: the oscsn2 mutant and the OsCSN2-OE mutant, both in the background of rice, and also generated point mutants of OsCSN2 (OsCSN2K64E, OsCSN2K67E, OsCSN2K71E and OsCSN2K104E) to further explore the regulatory function of OsCSN2. Phenotypic observation and gene expression analysis were conducted on plants from the generated mutants, tracking their growth from the seedling to the heading stages. The results showed that the loss and modification of OsCSN2 had limited effects on plant growth and development during the early stages of both the wild-type and mutant plants. However, as the plants grew to 60days, significant differences emerged. The OsCSN2 point mutants exhibited increased tillering compared to the OsCSN2-OE mutant plants, which were already at the tillering stage. On the other hand, the OsCSN2 point mutant had already progressed to the heading and flowering stages, with the shorter plants. These results, along with functional predictions of the OsCSN2 protein, indicated that changes in the 64th, 67th, 71st, and 104th amino acids of OsCSN2 affected its ubiquitination site, influencing the ubiquitination function of CSN and consequently impacting the degradation of the DELLA protein SLR1. Taken together, it can be speculated that OsCSN2 plays a key role in GA and BR pathways by influencing the functional regulation of the transcription factor SLR1 in CSN, thereby affecting the growth and development of rice and the number of tillers.

Nanoselenium inhibits chromium toxicity in wheat plants by modifying the antioxidant defense system, ascorbate glutathione cycle, and glyoxalase system

Chromium (Cr) stress negatively impacts plant growth and physiological processes, making it a significant environmental concern. This study investigates the effectiveness of selenium nanoparticles (Se-NPs) in mitigating Cr stress on plants, comparing its efficacy with traditional selenium (Se). Nevertheless, research on using soil-applied Se-NP to lessen Cr buildup in plants has not been widely documented as of now. Here, we investigate the effectiveness of Se-NPs in mitigating Cr stress on plants, comparing their efficacy with traditional Se and control. Under the pervasive influence of Cr stress, Se-NPs exhibit remarkable superiority over conventional Se, significantly enhancing growth parameters (fresh weight, dry weight, shoot length, and root length), respectively, compared to the Cr-stressed plants. Physiologically, Se-NPs outperform Se by substantially improving the net photosynthesis rate (+32%), transpiration (+147%), and stomatal conductance (+64%), indicating its exceptional contribution to fortifying plant resilience under Cr stress. In mitigating oxidative stress, Se-NPs surpass Se, demonstrating a more pronounced reduction in LOX activity (−35%), MDA levels (−34%), H2O2 (−37%), and MG (−47%), showcasing heightened protection against Cr induced oxidative damage. Antioxidant defense systems also witness greater activation under Se-NPs, with higher increases in SOD (+27%), CAT (+54%), GPX (+7%), and GST (+37%) activities. Moreover, under Cr stress Se-NPs induce a more profound upregulation of antioxidant genes and the production of secondary metabolites, emphasizing its superior impact on the plant's defense mechanisms. The modulation of the ASA-GSH cycle by Se-NPs is more robust, with increased levels of ASA (+69%) and GSH (+33%), and decreased DHA (−28%) and GSSG (−29%), suggesting a more effective antioxidant network. Moreover, Se-NPs demonstrate heightened interference in Cr uptake in both root (−30%) and shoot tissues (−23%), indicating its potential to disrupt the Cr-induced ASA-GSH cycle. The study highlights the potential of Se-NPs as a more effective and sustainable approach to mitigate Cr-induced stress in plants, emphasizing the importance of understanding the underlying mechanisms and optimizing application strategies for improved agricultural sustainability and productivity in Cr-contaminated environments. Furthermore, it is necessary to conduct economic feasibility studies and assessments of the effects of Se-NP on soil microbiota in order to promote the widespread application in agricultural activities.

Overexpression of the OsFes1A increased the phytosterols content and enhanced drought and salt stress tolerance in Arabidopsis.

Overexpression of the rice gene, OsFes1A, increased phytosterol content and drought and salt stress tolerance in Arabidopsis. Phytosterols are key components of the phospholipid bilayer membrane and regulate various processes of plant growth and response to biotic and abiotic stresses. In this study, it was demonstrated that the overexpression of OsFes1A (Hsp70 nucleotide exchange factor Fes1) increased phytosterols content and enhanced tolerance to salt and drought stress in Arabidopsis. In transgenic plants, the average content of campesterol was 17.6% higher than that of WT, and the average content of β-sitosterol reached 923.75μg/g, with an increase of 1.33-fold. In fes1a seeds, the contents of campesterol and β-sitosterol reduced by 20% and 10.93%, respectively. In OsFes1A transgenic seeds, the contents of campesterol and β-sitosterol increased by 1.38-fold and 1.25-fold respectively. Furthermore, the germination rate of transgenic Arabidopsis was significantly higher than WT under stress (salt, ABA, and drought treatment). Under salt stress, transgenic plants accumulated a lower MDA content, higher chlorophyll content, and POD activity relative to the wild type, while the mutants showed the opposite pattern Our study found multiple other functions of OsFes1A beyond the defined role of Fes1 in regulating Hsp70, contributing to the better understanding of the essential roles of Fes1 in plants. Meanwhile, it provides the theoretical basis for developing high phytosterol crop varieties.

Characterization of NAC Gene Family in Ammopiptanthus mongolicus and Functional Analysis of AmNAC24, an Osmotic and Cold-Stress-Induced NAC Gene.

The NAC family of transcription factors (TFs) is recognized as a significant group within the plant kingdom, contributing crucially to managing growth and development processes in plants, as well as to their response and adaptation to various environmental stressors. Ammopiptanthus mongolicus, a temperate evergreen shrub renowned for its remarkable resilience to low temperatures and drought stress, presents an ideal subject for investigating the potential involvement of NAC TFs in stress response mechanisms. Here, the structure, evolution, and expression profiles of NAC family TFs were analyzed systematically, and a cold and osmotic stress-induced member, AmNAC24, was selected and functionally characterized. A total of 86 NAC genes were identified in A. mongolicus, and these were divided into 15 groups. Up to 48 and 8 NAC genes were generated by segmental duplication and tandem duplication, respectively, indicating that segmental duplication is a predominant mechanism in the expansion of the NAC gene family in A. mongolicus. A considerable amount of NAC genes, including AmNAC24, exhibited upregulation in response to cold and osmotic stress. This observation is in line with the detection of numerous cis-acting elements linked to abiotic stress response in the promoters of A. mongolicus NAC genes. Subcellular localization revealed the nuclear residence of the AmNAC24 protein, coupled with demonstrable transcriptional activation activity. AmNAC24 overexpression enhanced the tolerance of cold and osmotic stresses in Arabidopsis thaliana, possibly by maintaining ROS homeostasis. The present study provided essential data for understanding the biological functions of NAC TFs in plants.

Influence of urban environment factors on morphometric parameters and accumulation of secondary metabolites in Cercis canadensis L. and Cercis siliquastrum ‘Alba’

Consideration of the role of green spaces in urban landscaping is extremely important, as they not only decorate the urban landscape, but also effectively reduce air pollution, regulate the microclimate and play an important role in improving the ecology and quality of life of residents. The purpose of the study was to determine the influence of urban environmental factors on the development and secondary metabolism of plants of the genus Cercis L. Plants growing in Kyiv (Ukraine) under conditions with different air humidity, anthropogenic load, and excess or lack of insolation were selected for the study. Plant growth processes were studied by morphometric parameters of annual shoots of Cercis siliquastrum ‘Alba’ and Cercis canadensis L. growing under different conditions. Morphometric methods, fluorescence microscopy, high-performance thin-layer chromatography and regression analysis were used in the study. The research data show that insufficient sunlight has a negative impact on shoot growth. The specificity of the phenolic profiles that can be used to distinguish between the species Cercis canadensis L. and Cercis siliquastrum ‘Alba’ was established. The principal component analysis confirmed that phenolic profiles depend on habitat conditions and affect plant growth and development. The Gaussian model was used to analyse the growth dynamics of annual shoots during the growing season, which allowed us to describe the specifics of internode formation during the growing season quite accurately. This model allowed us to detect the phenomenon of the last internodes falling off at the end of the growing season, which caused the deviation of the morphometric parameters of metameres from the normal distribution along the time axis. Anatomical studies confirmed that the separation of one or more of the last internodes was due to active corking of the internal tissues of the stem, blocking of the xylem and formation of a separating layer, which led to the fall of the shoot tip. This phenomenon shows signs of plant adaptation to low temperatures in winter. The tops of the shoots often do not have time to lignify and accumulate the required amount of cryoprotectants. With the formation of a separating layer, the available energy resources are redistributed to the lateral buds, which receive the necessary resources to prepare for the winter period and provide new growth in the next growing season. The adaptive potential of the two species of the genus Cercis L. confirms the prospects of their use in urban ecosystems, which can positively affect the conservation of biodiversity in general

Phylogenomic curation of Ovate Family Proteins (OFPs) in the U's Triangle of Brassica L. indicates stress-induced growth modulation.

The Ovate Family Proteins (OFPs) gene family houses a class of proteins that are involved in regulating plant growth and development. To date, there is no report of the simultaneous functional characterization of this gene family in all members of U's Triangle of Brassica. Here, we retrieved a combined total of 256 OFP protein sequences and analyzed their chromosomal localization, gene structure, conserved protein motif domains, and the pattern of cis-acting regulatory elements. The abundance of light-responsive elements like G-box, MRE, and GT1 motif suggests that OFPs are sensitive to the stimuli of light. The protein-protein interaction network analysis revealed that OFP05 and its orthologous genes were involved in regulating the process of transcriptional repression through their interaction with homeodomain transcription factors like KNAT and BLH. The presence of domains like DNA binding 2 and its superfamily speculated the involvement of OFPs in regulating gene expression. The biotic and abiotic stress, and the tissue-specific expression analysis of the RNA-seq datasets revealed that some of the genes such as BjuOFP30, and BnaOFP27, BolOFP11, and BolOFP10 were highly upregulated in seed coat at the mature stage and roots under various chemical stress conditions respectively which suggests their crucial role in plant growth and development processes. Experimental validation of prominent BnaOFPs such as BnaOFP27 confirmed their involvement in regulating gene expression under salinity, heavy metal, drought, heat, and cold stress. The GO and KEGG pathway enrichment analysis also sheds light on the involvement of OFPs in regulating plant growth and development. These findings have the potential to serve as a forerunner for future studies in terms of functionally diverse analysis of the OFP gene family in Brassica and other plant species.