Lateral Root Growth Research Articles

Signalling Overlaps between Nitrate and Auxin in Regulation of The Root System Architecture: Insights from the Arabidopsis thaliana.

Nitrate (NO3–) and auxin are key regulators of root growth and development, modulating the signalling cascades in auxin-induced lateral root formation. Auxin biosynthesis, transport, and transduction are significantly altered by nitrate. A decrease in nitrate (NO3–) supply tends to promote auxin translocation from shoots to roots and vice-versa. This nitrate mediated auxin biosynthesis regulating lateral roots growth is induced by the nitrate transporters and its downstream transcription factors. Most nitrate responsive genes (short-term and long-term) are involved in signalling overlap between nitrate and auxin, thereby inducing lateral roots initiation, emergence, and development. Moreover, in the auxin signalling pathway, the varying nitrate supply regulates lateral roots development by modulating the auxin accumulation in the roots. Here, we focus on the roles of nitrate responsive genes in mediating auxin biosynthesis in Arabidopsis root, and the mechanism involved in the transport of auxin at different nitrate levels. In addition, this review also provides an insight into the significance of nitrate responsive regulatory module and their downstream transcription factors in root system architecture in the model plant Arabidopsis thaliana.

UV-B Response: When UVR8 Meets MYBs.

Although it is well known that plants respond to UV-B light, how UV-B regulates plant growth and development in an organ-specific manner remains unknown. Two recent reports by Yang et al. and Qian et al. show that the UV-B photoreceptor UVR8 interacts with different MYB transcription factors in arabidopsis (A. thaliana) cotyledons and roots to control cotyledon expansion and lateral root growth, respectively.

The plant-growth promoting bacteria promote cadmium uptake by inducing a hormonal crosstalk and lateral root formation in a hyperaccumulator plant Sedum alfredii

Plant growth-promoting bacteria (PGPB) that inhabit hyperaccumulating plants assist cadmium (Cd) absorption, but the underlying mechanism has not been comprehensively studied. For this reason, we combined the fluorescence imaging, and transcriptomic and metabolomic methods in a Cd hyperaccumulator, Sedum alfredii, inoculated or not with PGPB Pseudomonas fluorescens. The results showed that the newly emerged lateral roots, that were heavily colonized by P. fluorescens, are the main entry for Cd influx in S. alfredii. Inoculation with P. fluorescens promoted a lateral root formation of its host plant, leading to a higher Cd phytoremediation efficiency. Furthermore, the plant transcriptome revealed that 146 plant hormone related genes were significantly up-regulated by the bacterial inoculation, with 119 of them showing a complex interaction, which suggests that a hormonal crosstalk participated root development. The targeted metabolomics analysis showed that P. fluorescens inoculation significantly increased indole acetic acid concentration and significantly decreased concentrations of abscisic acid, brassinolide, trans-zeatin, ethylene and jasmonic acid in S. alfredii roots, thereby inducing lateral root emergence. Altogether, our results highlight the importance of PGPB-induced lateral root formation for the increased Cd uptake in a hyperaccumulating plant.

Interactions Between Exogenous Cytokinin and Nitrogen Application Regulate Tiller Bud Growth via Sucrose and Nitrogen Allocation in Winter Wheat

In this study, we assessed the effects of exogenous cytokinin and nitrogen levels on sucrose and nitrogen allocation and tiller bud growth. Results showed that low nitrogen (1.25 mmol L−1, LN) inhibited tiller bud growth and decreased tiller occurrence rate, compared with high nitrogen (7.5 mmol L−1, HN). SPAD readings and leaf photosynthesis rate was decreased by LN, which resulted in the decrease of sucrose content in the tiller bud. Furthermore, LN promoted the primary and lateral root growth, which may compete with the tiller bud for sucrose and nitrogen. Application of 6-BA (30 mg L−1) increased tiller bud length and the occurrence rate. Compared with LN, leaf photosynthesis and root activity was improved by application of 6-BA under LN condition (LN + 6-BA), which caused the increase of sucrose and nitrogen accumulation in tiller bud. Moreover, LN + 6-BA significantly increased endogenous zeatin (Zt) contents and decreased abscisic acid (ABA) levels in the tiller node. Correlation analysis indicated that tiller bud growth was positively correlated with sucrose and nitrogen accumulation. The latter two were positively correlated with endogenous Zt but negatively correlated with ABA and auxin (IAA):Zt, gibberellin (GA3):Zt, and ABA:Zt. Application of 6-BA with reduced nitrogen fertilizer (240 kg N ha−1, N1 + 6-BA) increased both grain yield and the partial factor productivity of applied N. Therefore, an appropriate combination of exogenous cytokinin with reduced N application could regulate tiller growth to enhance yield by endogenous hormones balance and sucrose and nitrogen allocation in the plant.

Impact of soil water content on maize responses to the plant growth‐promoting rhizobacterium Azospirillum lipoferum CRT1

AbstractMembers of the bacterial genus Azospirillum are root‐associated bacteria that increase yield in cereals by promoting growth and alleviating drought stress. How plants integrate the many bacterium‐derived growth‐promoting stimuli with other environmental factors to generate a coordinated response remains unresolved. Using a commercial Azospirillum strain, A. lipoferum CRT1 and two host maize cultivars, it was observed that bacterization reduced the drought‐induced increase in lateral root growth and enhanced the flood‐induced increase in lateral root growth in the more drought‐ and flood‐sensitive cultivar. In the other one, A. lipoferum CRT1 only elicited a moderate root growth response under low soil water potential. The photosynthetic potential and activity were increased in the earlier cultivar and decreased in the later one, irrespective of the soil water content. No impact of the bacterium was seen on the growth of the leaves of both cultivars under both stresses until the third leaf stage, therefore suggesting that it is a consequence of multiple primary adaptations to biotic and abiotic stresses. It is suggested that host–bacteria recognition leads to a stress‐specific modulation of the root response and a differential stress‐independent effect on photosynthesis. This is the first report of the impact of Azospirillum under flood conditions.

A Cd/Zn Co-hyperaccumulator and Pb accumulator, Sedum alfredii, is of high Cu tolerance

High sensitivity towards Cu toxicity is problematic when using some hyperaccumulator plants for phytoremediation of soils with mixed contamination of Cu. Sedum alfredii, a Cd/Zn co-hyperaccumulator and Pb accumulator, is widely used for remediation of Cd, Zn, and Pb co-contaminated soils in China. In this paper, the tolerance and accumulation ability of S. alfredii towards Cu stress and its potential for phytoremediation of multi-metal polluted soils have been studied. Both the hyperaccumulating ecotype (HE) and non-hyperaccumulating ecotype (NHE) of S. alfredii accumulated high Cu in the roots and translocated minimal Cu to the shoots, and Cu in the stems and leaves mostly restricted in the vascular tissues (phloem zone). The HE plants, however, exhibited high Cu resistance with stimulated lateral root growth and increased chlorophyll content under 10 μM Cu treatment. XANES analysis showed that Cu in HE roots comprised Cu2+ (46.7%), Cu-histidine (35.2%) and Cu-cell wall (18.1%). The NHE under Cu stress showed decreased biomass, reduced leaf chlorophyll content, altered root architecture, and higher Cu localized to root cell wall as compared with the HEs. Potted HE plants thrived six months in multi-metal contaminated soils including 3897 mg kg−1 available Cu. In conclusion, HE S alfredii is highly tolerant toward Cu due to metal homeostasis in root cells. Therefore, this plant has great potential to remediate Zn, Cd, and Pb contaminated soils those also contain high levels of Cu.

At-Hook Motif Nuclear Localised Protein 18 as a Novel Modulator of Root System Architecture.

The At-Hook Motif Nuclear Localized Protein (AHL) gene family encodes embryophyte-specific nuclear proteins with DNA binding activity. They modulate gene expression and affect various developmental processes in plants. We identify AHL18 (At3G60870) as a developmental modulator of root system architecture and growth. AHL18 is involved in regulation of the length of the proliferation domain and number of dividing cells in the root apical meristem and thereby, cell production. Both primary root growth and lateral root development respond according to AHL18 transcription level. The ahl18 knock-out plants show reduced root systems due to a shorter primary root and a lower number of lateral roots. This change results from a higher number of arrested and non-developing lateral root primordia (LRP) rather than from a decreased LRP initiation. The over-expression of AHL18 results in a more extensive root system, longer primary roots, and increased density of lateral root initiation events. AHL18 is thus involved in the formation of lateral roots at both LRP initiation and their later development. We conclude that AHL18 participates in modulation of root system architecture through regulation of root apical meristem activity, lateral root initiation and emergence; these correspond well with expression pattern of AHL18.

Involvement of a truncated MADS-box transcription factor ZmTMM1 in root nitrate foraging

Plants can develop root systems with distinct anatomical features and morphological plasticity to forage nutrients distributed heterogeneously in soils. Lateral root proliferation is a typical nutrient-foraging response to a local supply of nitrate, which has been investigated across many plant species. However, the underlying mechanism in maize roots remains largely unknown. Here, we report on identification of a maize truncated MIKC-type MADS-box transcription factor (ZmTMM1) lacking K- and C-domains, expressed preferentially in the lateral root branching zone and induced by the localized supply of nitrate. ZmTMM1 belongs to the AGL17-like MADS-box transcription factor family that contains orthologs of ANR1, a key regulator for root nitrate foraging in Arabidopsis. Ectopic overexpression of ZmTMM1 recovers the defective growth of lateral roots in the Arabidopsis anr1 agl21 double mutant. The local activation of glucocorticoid receptor fusion proteins for ZmTMM1 and an artificially truncated form of AtANR1 without the K- and C-domains stimulates the lateral root growth of the Arabidopsis anr1 agl21 mutant, providing evidence that ZmTMM1 encodes a functional MADS-box that modulates lateral root development. However, no phenotype was observed in ZmTMM1-RNAi transgenic maize lines, suggesting a possible genetic redundancy of ZmTMM1 with other AGL17-like genes in maize. A comparative genome analysis further suggests that a nitrate-inducible transcriptional regulation is probably conserved in both truncated and non-truncated forms of ZmTMM1-like MADS-box transcription factors found in grass species.

Isolation of Trichoderma in the rhizosphere soil of Syringa oblata from Harbin and their biocontrol and growth promotion function

For the effective biocontrol of Syringa powdery mildew (Mircosphaera syringejaponicae) and to promote seedling growth, we identified 44 of the 181 Trichoderma isolates (T1-T181) isolated from the rhizosphere soil. Analysis identified 10 Trichoderma species, and T. pseudoharzianum T1 (TpseT1), T. afroharzianum T52 (TafrT52), and T. asperelloides T57 (TaspT57) were selected to make Trichoderma biofertilizer because of their fast growth and high spore production. Exposing Syringa oblata to Trichoderma biofertilizer showed that TafrT52 and TaspT57 could induce abscisic acid (ABA) production, and promote the shedding of diseased leaves and the generation of new leaves. Furthermore, TafrT52 increased the catalase (CAT) activity and reduced the H2O2 content. And the disease incidence was reduced by 37.84 % by Tasp (highest) in 2017 year and by 13.84 % by TpseT1(lowest) in 2018 year. In addition, all Trichoderma strains we selected could promote the lateral root growth of S. oblata seedlings; however, because of the downregulated gene expression at the late stage of chlorophyll synthesis, the chlorophyll content decreased in the new leaves. Antagonism among different Trichoderma species led to low biocontrol and growth promotion effects, thus the Trichoderma mixture cannot be use as biofertilizer. TafrT52, with better biocontrol and growth promotion effects, could be used for biocontrol of M. syringejaponicae.

Transcriptomic analysis reveals root metabolic alteration and induction of huanglongbing resistance by sulphonamide antibiotics in huanglongbing‐affected citrus plants

AbstractHuanglongbing (HLB) is a devastating disease that affects the entire citrus plant, including the root system. Previous studies have shown that sulphonamide antibiotics can suppress titres of the pathogen that causes HLB, ‘Candidatus Liberibacter asiaticus’ (CLas), and affect root morphology in the plant through unknown mechanisms. To better understand the response of CLas‐infected roots to sulphonamide antibiotics, hydroponic cultures of CLas‐infected citrus roots were treated with sulfadimethoxine sodium (SDX), indole butyric acid (IBA), or water for 60 days to evaluate root metabolism and resistance against CLas via transcriptomic analysis. This study indicated that SDX and IBA treatments increased active root surface area in HLB‐affected citrus, which may be due to root hair and lateral root growth. CLas titres in HLB‐affected citrus roots treated with SDX were lower than those of IBA and control treatments. Function categorization indicated that plant hormone signal transduction and plant–pathogen interaction were the most markedly enriched pathways in the HLB‐affected citrus root after SDX treatment. The expression of genes involved in biosynthesis of auxin and ethylene, which are related to root hair and lateral root growth, were up‐regulated by SDX. Moreover, SDX also induced genes related to the metabolism of jasmonates, brassinosteroids, reactive oxygen species, and secondary metabolites, which are beneficial for resistance against HLB. In conclusion, we propose a model for SDX in regulating metabolic pathways in the root and resistance against CLas in HLB‐affected citrus root, which is beneficial for recovering an HLB‐affected citrus root system and combating CLas.

The LATERAL ROOT DENSITY gene regulates root growth during water stress in wheat.

SummaryDrought stress is the major limiting factor in agriculture. Wheat, which is the most widely grown crop in the world, is predominantly cultivated in drought‐prone rainfed environments. Since roots play a critical role in water uptake, root response to water limitations is an important component for enhancing wheat adaptation. In an effort to discover novel genetic sources for improving wheat adaptation, we characterized a wheat translocation line with a chromosomal segment from Agropyron elongatum, a wild relative of wheat, which unlike common wheat maintains root growth under limited‐water conditions. By exploring the root transcriptome data, we found that reduced transcript level of LATERAL ROOT DENSITY (LRD) gene under limited water in the Agropyron translocation line confers it the ability to maintain root growth. The Agropyron allele of LRD is down‐regulated in response to water limitation in contrast with the wheat LRD allele, which is up‐regulated by water deficit stress. Suppression of LRD expression in wheat RNAi plants confers the ability to maintain root growth under water limitation. We show that exogenous gibberellic acid (GA) promotes lateral root growth and present evidence for the role of GA in mediating the differential regulation of LRD between the common wheat and the Agropyron alleles under water stress. Suppression of LRD also had a positive pleiotropic effect on grain size and number under optimal growth conditions. Collectively, our findings suggest that LRD can be potentially useful for improving wheat response to water stress and altering yield components.

Melatonin enhances drought resistance by regulating leaf stomatal behaviour, root growth and catalase activity in two contrasting rapeseed (Brassica napus L.) genotypes

Two contrasting rapeseed (Brassica napus L.) genotypes, Qinyou 8 (drought-sensitive) and Q2 (drought-tolerant), were studied under drought stress with or without pretreatment with melatonin to (i) explore whether melatonin enhances drought resistance by regulating root growth and (ii) determine the relationship between the belowground and aboveground responses to melatonin under drought stress. Results show that the light-saturated rate of photosynthesis (Pn), stomatal conductance (gs), water use efficiency (WUE) and chlorophyll content were decreased by drought for Qinyou 8, whereas drought only decreased Pn and chlorophyll content for Q2. Drought decreased actual photochemical efficiency in saturated light (Fv’/Fm’), actual photochemical efficiency (PhiPSⅡ), quenching of photochemical efficiency (qL) and electron transport rate (ETR) in Qinyou 8. However drought only decreased Fv’/Fm’ and qL in Q2. Drought increased malondialdehyde (MDA) and hydrogen peroxide (H2O2) contents in the roots of both genotypes. Melatonin had no significant additional effects on root guaiacol peroxidase (POD) and superoxide dismutase (SOD) activities, but enhanced root catalase (CAT) activity of droughted plants further. Melatonin promoted taproot and lateral root growth under drought stress. Melatonin also promoted stomatal opening resulting in enhanced photosynthesis in the two genotypes. The two mechanisms induced by melatonin synergistically enhance drought resistance of rapeseed as indicated by enhanced gas exchange parameters under melatonin pretreatment. The findings provide evidence for a physiological role of melatonin in improving drought resistance, especially in belowground parts.

Intracellularly Localized PIN-FORMED8 Promotes Lateral Root Emergence in Arabidopsis.

PIN-FORMED (PIN) auxin efflux carriers with a long central hydrophilic loop (long PINs) have been implicated in organogenesis. However, the role of short hydrophilic loop PINs (short PINs) in organogenesis is largely unknown. In this study, we investigated the role of a short PIN, PIN8, in lateral root (LR) development in Arabidopsis thaliana. The loss-of-function mutation in PIN8 significantly decreased LR density, mostly by affecting the emergence stage. PIN8 showed a sporadic expression pattern along the root vascular cells in the phloem, where the PIN8 protein predominantly localized to intracellular compartments. During LR primordium development, PIN8 was expressed at the late stage. Plasma membrane (PM)-localized long PINs suppressed LR formation when expressed in the PIN8 domain. Conversely, an auxin influx carrier, AUX1, restored the wild-type (WT) LR density when expressed in the PIN8 domain of the pin8 mutant root. Moreover, LR emergence was considerably inhibited when AXR2-1, the dominant negative form of Aux/IAA7, compromised auxin signaling in the PIN8 domain. Consistent with these observations, the expression of many genes implicated in late LR development was suppressed in the pin8 mutant compared with the WT. Our results suggest that the intracellularly localized PIN8 affects LR development most likely by modulating intracellular auxin translocation. Thus, the function of PIN8 is distinctive from that of PM-localized long PINs, where they generate local auxin gradients for organogenesis by conducting cell-to-cell auxin reflux.

TCP10, a TCP transcription factor in moso bamboo (Phyllostachys edulis), confers drought tolerance to transgenic plants

TCP transcription factors function as significant regulators in plant development and stress defense. In this study, a TCP transcription factor, TCP10, was isolated from moso bamboo (Phyllostachys edulis), and its expression level was induced under drought and abscisic acid (ABA)-treatment conditions. A distinct role in regulating drought-stress responses was identified. PeTCP10 conferred drought tolerance of transgenic Arabidopsis and rice as determined through phenotypic and stress-associated physiological indicators analysis, including relative water content, root growth, survival rate, germination rate, as well as malondialdehyde content. Additionally, ABA sensitivity decreased in transgenic Arabidopsis and rice compared with wild-type plants; over-expressing PeTCP10 in Arabidopsis promoted stomatal closure under ABA-treatment conditions, and ABA accumulated was non-significant difference between transgenic and wild-type Arabidopsis under drought condition. PeTCP10 inhibited lateral root growth via Me-JA (Methyl jasmonate) dependent pathway, while increasing taproot growth under continuous mannitol treatments during the seedling stage in transgenic Arabidopsis. RNA-sequencing revealed that PeTCP10 regulated the expression of a wide spectrum of stress-responsive DEGs. Yeast one hybrid and EMSA assays showed that stress-/ABA-responsive gene BT2 was the directly target gene of PeTCP10. Thus, PeTCP10 may have positive regulatory functions in the drought tolerance of plants through an ABA-dependent signaling pathway and negative in lateral root growth via Me-JA mediated pathway.

Bacillus subtilis strain GOT9 confers enhanced tolerance to drought and salt stresses in Arabidopsis thaliana and Brassica campestris

Soil is a primary source of water and inorganic nutrients vital for plant growth. In particular, the rhizosphere, a microecological region around the plant roots, is enriched with root exudates that enable beneficial microbial communities to form. Plant growth-promoting rhizobacteria (PGPR) are rhizosphere bacteria that contribute to the improvement of plant growth through diverse physiological mechanisms. Identifying PGPR is beneficial for agriculture because their use can effectively increase the productivity of plants without the harmful side effects of chemical fertilizers. To further enrich the pool of PGPR that contribute to abiotic stress resistance in plants, we screened roughly 491 bacteria that had previously been isolated in soil from Gotjawal in Jeju island, South Korea. Among several candidates, the application of Bacillus subtilis strain GOT9, led to the enhancement of drought and salt stress tolerance in Arabidopsis. In agreement with the increased stress tolerance phenotypes, its application resulted in increases in the transcripts of various drought stress- and salt stress-inducible genes in the absence or presence of the stresses. Furthermore, the treatment resulted in improved lateral root growth and development in Arabidopsis. GOT9 also led to enhanced tolerance against drought and salt stresses and to upregulation of drought-inducible genes in Brassica, a closely related crop to Arabidopsis. Taken together, these results show that GOT9 could be utilized as a biotic resource that effectively minimizes damage to plants from environmental stresses.

Exogenous strigolactones promote lateral root growth by reducing the endogenous auxin level in rapeseed

Strigolactones (SLs) are newly discovered plant hormones which regulate the normal development of different plant organs, especially root architecture. Lateral root formation of rapeseed seedlings before winter has great effects on the plant growth and seed yield. Here, we treated the seedlings of Zhongshuang 11 (ZS11), an elite conventional rapeseed cultivar, with different concentrations of GR24 (a synthetic analogue of strigolactones), and found that a low concentration (0.18 μmol L−1) of GR24 could significantly increase the lateral root growth, shoot growth, and root/shoot ratio of seedlings. RNA-Seq analysis of lateral roots at 12 h, 1 d, 4 d, and 7 d after GR24 treatment showed that 2 301, 4 626, 1 595, and 783 genes were significantly differentially expressed, respectively. Function enrichment analysis revealed that the plant hormone transduction pathway, tryptophan metabolism, and the phenylpropanoid biosynthesis pathway were over-represented. Moreover, transcription factors, including AP2/ERF, AUX/IAA, NAC, MYB, and WRKY, were up-regulated at 1 d after GR24 treatment. Metabolomics profiling further demonstrated that the amounts of various metabolites, such as indole-3-acetic acid (IAA) and cis-zeatin were drastically altered. In particular, the concentrations of endogenous IAA significantly decreased by 52.4 and 75.8% at 12 h and 1 d after GR24 treatment, respectively. Our study indicated that low concentrations of exogenous SLs could promote the lateral root growth of rapeseed through interaction with other phytohormones, which provides useful clues for the effects of SLs on root architecture and crop productivity.

Auxin-dependent control of a plasmodesmal regulator creates a negative feedback loop modulating lateral root emergence

Lateral roots originate from initial cells deep within the main root and must emerge through several overlying layers. Lateral root emergence requires the outgrowth of the new primordium (LRP) to coincide with the timely separation of overlying root cells, a developmental program coordinated by the hormone auxin. Here, we report that in Arabidopsis thaliana roots, auxin controls the spatiotemporal expression of the plasmodesmal regulator PDLP5 in cells overlying LRP, creating a negative feedback loop. PDLP5, which functions to restrict the cell-to-cell movement of signals via plasmodesmata, is induced by auxin in cells overlying LRP in a progressive manner. PDLP5 localizes to plasmodesmata in these cells and negatively impacts organ emergence as well as overall root branching. We present a model, incorporating the spatiotemporal expression of PDLP5 in LRP-overlying cells into known auxin-regulated LRP-overlying cell separation pathways, and speculate how PDLP5 may function to negatively regulate the lateral root emergence process.

Cell Death in Cells Overlying Lateral Root Primordia Facilitates Organ Growth in Arabidopsis.

Plant organ growth is widely accepted to be determined by cell division and cell expansion, but, unlike that in animals, the contribution of cell elimination has rarely been recognized. We investigated this paradigm during Arabidopsis lateral root formation, when the lateral root primordia (LRP) must traverse three overlying cell layers within the parent root. A subset of LRP-overlying cells displayed the induction of marker genes for cell types undergoing developmental cell death, and their cell death was detected by electron, confocal, and light sheet microscopy techniques. LRP growth was delayed in cell-death-deficient mutants lacking the positive cell death regulator ORESARA1/ANAC092 (ORE1). LRP growth was restored in ore1-2 knockout plants by genetically inducing cell elimination in cells overlying the LRP or by physically killing LRP-overlying cells by ablation with optical tweezers. Our results support that, in addition to previously discovered mechanisms, cell elimination contributes to regulating lateral root emergence.

Применение гидратцеллюлозной пленки для исследования роста и развития корневой системы модельного растения Arabidopsis thaliana L.

A new technique for Arabidopsis thaliana cultivation has been proposed that combines the use of a phytogel-based nutrient medium and a hydrophilic membrane of hydrate cellulose film, separating the root system of the plant from the medium thickness. Growth rates of both main and lateral roots were faster in the plants cultivated on the surface of hydrate cellulose film than in the plants grown in the phytogel volume. The location of the root system on the surface of the transparent hydrate film simplifies its observation and analysis and facilitates plant transplantation with preservation of the root system configuration. The proposed technique allowed us to first assess the effect of exogenous auxin on the growth of lateral roots at the 5-6 developmental stage. methods to study plant root systems, hydrate cellulose film, A. thaliana, lateral roots, differential root growth rate, auxin The work was financially supported by the Russian Foundation for Basic Research (Project Bel_mol_a 19-54-04015) and the basic topic of the Russian Academy of Sciences - IBMP RAS «Regularities of the Influence of Extreme Environmental Factors on the Processes of Cultivation of Higher Plants and the Development of Japanese Quail Tissues at Different Stages of its Ontogenesis under the Conditions of Regenerative Life Support Systems».

Disruption of <i>CYCLOPHILIN 38</i> Function Reveals a Photosynthesis-Dependent Systemic Signal Controlling Lateral Root Emergence

Photosynthesis in leaves generates the fixed-carbon resources and essential metabolites that support sink tissues, such as roots. One of these products, sucrose, is known to promote primary root growth, but it is not clear what other molecules may be involved and whether other stages of root system development are affected by photosynthate levels. Through a mutant screen to identify pathways regulating root system architecture, we identified a mutation in the CYCLOPHILIN 38 (CYP38) gene, which causes an accumulation of pre-emergent stage lateral roots, with a minor effect on primary root growth. CYP38 was previously reported to maintain the stability of Photosystem II (PSII) in chloroplasts. CYP38 expression is enriched in the shoot and grafting experiments show that the gene acts non-cell autonomously to promote lateral root emergence. Growth of wild-type plants under low light conditions phenocopied the cyp38 lateral root emergence phenotype as did the inhibition of PSII-dependent electron transport or NADPH production. Importantly, the cyp38 root phenotype is not rescued by exogenous sucrose, suggesting the involvement of another metabolite. Auxin (IAA) is an essential hormone promoting root growth and its biosynthesis from tryptophan is dependent on reductant generated during photosynthesis. Both WT seedlings grown under low light and cyp38 mutants have highly diminished levels of IAA in root tissues. The cyp38 lateral root defect is rescued by IAA treatment, revealing that photosynthesis promotes lateral root emergence partly through IAA biosynthesis. Metabolomic profiling shows that the accumulation of several defense-related metabolites are also photosynthesis-dependent, suggesting that the regulation of a number of energy-intensive pathways are down-regulated when light becomes limiting.