The study investigated the effect of cyclic variable temperature conditioning (CVTC) on the quality parameters of sweet potatoes and their relationship with the antioxidant system (phenols synthesis and reactive oxygen species metabolism). Results showed that CVTC maintained the color and normal respiratory intensity of sweet potatoes and reduced the accumulation of malondialdehyde (MDA) during storage. In detail, total phenols content (TPC) and total flavonoids content (TFC) in CVTC group were significantly higher than those in control (CK), cold storage (CS), and high temperature conditioning (HTC) groups at 8 d, with increases of 17.58% and 85.12% from day 0, respectively. Additionally, phenylalanine ammonia lyase (PAL) and hydroxycinnamoyl transferase (HCT) activities in CVTC group were significantly higher than those in CK, CS, and HTC groups at 8 d. These results showed that CVTC activated the synthesis of phenols by activating the key enzymes activities, resulting in a significant increase in total phenols and flavonoids contents. Besides, CVTC improved the superoxide anion scavenging capacity of sweet potatoes and promoted the decomposition of hydrogen peroxide (H2O2). Meanwhile, superoxide dismutase (SOD) and catalase (CAT) activities in CVTC group were significantly higher than those in CK, CS, and HTC groups in the late storage period. In conclusion, CVTC enhanced the antioxidant activity of sweet potatoes by regulating the phenols synthesis and reactive oxygen species metabolism to maintain their postharvest quality.