Great Barrier Reef Research Articles

Lipid composition of coral propagules and reproductive material in coral restoration nurseries

Coral restoration efforts have rapidly increased worldwide, including the development of several programmes on the Great Barrier Reef (GBR) in recent years. While many restoration programmes utilise in-water nurseries to accelerate coral biomass yields, the impact of nursery environments on propagule quality has not been examined despite the importance of coral fitness for ensuring resistant populations. Here, we investigated two fitness indicators (lipid diversity and tissue protein abundance) of Acropora millepora adults and eggs grown on coral nurseries versus native reef on the GBR, with adults assessed at two sites (Blue Lagoon and Rayban) and eggs assessed at one site (Blue Lagoon). Lipid profiles of adult colonies varied by site and origin (nursery versus wild reef), with adult nursery corals exhibiting an elevated relative abundance of storage lipids (diacylglycerols and triacylglycerols) and lipid classes responsible for regulating membrane structure (phosphatidylcholines and sterol esters), while wild corals were characterised by a greater relative abundance of fatty acids and classes involved in immunoregulation. Comparing eggs from different origins, nursery offspring were richer in energy-storing triacylglycerols, as well as ceramides and phosphatidylcholines essential for membrane structure, while wild eggs had a greater relative abundance of wax ester species also important for energy storage. No differences were found in total protein abundance (adult or eggs) or egg physical characteristics (count and size) between nursery and wild origins. Variations in lipid profiles are consistent with differences in environmental conditions between reef sites and origin (nursery versus wild), highlighting the need to consider site selection and propagation conditions when planning restoration projects. Importantly, these findings demonstrate that the lipid classes with the highest relative abundance in A. millepora nursery and wild eggs differed from those in adults from the same origin, suggesting that propagation origin is more important for driving lipid profiles in coral eggs compared to parental effects.

Deepdive: Leveraging Pre-trained Deep Learning for Deep-Sea ROV Biota Identification in the Great Barrier Reef

Understanding and preserving the deep sea ecosystems is paramount for marine conservation efforts. Automated object (deep-sea biota) classification can enable the creation of detailed habitat maps that not only aid in biodiversity assessments but also provide essential data to evaluate ecosystem health and resilience. Having a significant source of labelled data helps prevent overfitting and enables training deep learning models with numerous parameters. In this paper, we contribute to the establishment of a significant deep-sea remotely operated vehicle (ROV) image classification dataset with 3994 images featuring deep-sea biota belonging to 33 classes. We manually label the images through rigorous quality control with human-in-the-loop image labelling. Leveraging data from ROV equipped with advanced imaging systems, our study provides results using novel deep-learning models for image classification. We use deep learning models including ResNet, DenseNet, Inception, and Inception-ResNet to benchmark the dataset that features class imbalance with many classes. Our results show that the Inception-ResNet model provides a mean classification accuracy of 65%, with AUC scores exceeding 0.8 for each class.

Genetic patterns reveal geographic drivers of divergence in silvereyes (Zosterops lateralis)

Identifying mechanisms that drive population divergence under varying geographic and ecological scenarios can inform our understanding of evolution and speciation. In particular, analysis of genetic data from island populations with known colonisation timelines allows us to identify potential source populations of diverging island subspecies and current relationships among populations. Silvereyes (Zosterops lateralis) are a small passerine that have served as a valuable study system to investigate evolutionary patterns on both large and small geographic scales. We examined genetic relatedness and diversity of two silvereye subspecies, the mainland Z. l. cornwalli and island Z. l. chlorocephalus, and used 18 077 single nucleotide polymorphisms (SNPs), to compare locations across southeast Queensland, Australia. Although silvereyes are prolific island colonisers our findings revealed population divergence over relatively small spatial scales was strongly influenced by geographic isolation mediated by water barriers. Strong genetic connectivity was displayed between mainland sites, but minimal inter-island connectivity was shown despite comparable sampling distances. Genetic diversity analysis showed little difference in heterozygosity between island and mainland populations, but lower inbreeding scores among the island populations. Our study confirmed the range of the Z. l. chlorocephalus subspecies throughout the southern Great Barrier Reef. Our results show that water barriers and not geographic distance per se are important in driving incipient divergence in island populations. This helps to explain the relatively high number of phenotypically differentiated, but often geographically proximate, island silvereye subspecies compared to a lower number of phenotypically less well-defined Australian continental subspecies.

A new species of Bivesiculoides (Digenea: Bivesiculidae) infecting atherinid fishes of the Great Barrier Reef, Queensland, Australia

We describe a new species of Bivesiculidae, Bivesiculoides maiae n. sp., from Hypoatherina tropicalis (Whitley) (Atherinidae) collected from off Heron Island (southern Great Barrier Reef, Queensland, Australia). Bivesiculoides maiae n. sp. is morphologically consistent with Bivesiculoides Yamaguti, 1938 in the entirely pre-testicular position of its uterus, and the possession of caeca and vitelline fields that extend posteriorly to level with the anterior extremity of the testis. The new species is morphologically distinct from the six known Bivesiculoides species in body size and shape, and shape of the pharynx and testis. Bivesiculoides maiae n. sp. is genetically distinct from the only other sequenced Bivesiculoides species, Bivesiculoides fusiformis Cribb, Bray & Barker, 1994, with which it occurs sympatrically at Heron Island. A review of related species allows two systematic recombinations. In view of the pre-testicular position of its uterus, we recombine Bivesicula hepsetiae Manter, 1947 as Bivesiculoides hepsetiae (Manter, 1947) n. comb. In view of its obtriangular body shape, round pharynx, strongly elongated testis, and the position of its ovary opposite the testis, we recombine Bivesiculoides triangularis Machida & Kuramochi, 2000 as Treptodemoides triangularis (Machida & Kuramochi, 2000) n. comb. Host-specificity of species of Bivesiculoides and their geographic distributions are discussed.

Thermal tolerance traits of individual corals are widely distributed across the Great Barrier Reef.

Adaptation of reef-building corals to global warming depends upon standing heritable variation in tolerance traits upon which selection can act. Yet limited knowledge exists on heat-tolerance variation among conspecific individuals separated by metres to hundreds of kilometres. Here, we performed standardized acute heat-stress assays to quantify the thermal tolerance traits of 709 colonies of Acropora spathulata from 13 reefs spanning 1060 km (9.5° latitude) of the Great Barrier Reef. Thermal thresholds for photochemical efficiency and chlorophyll retention varied considerably among individual colonies both among reefs (approximately 6°C) and within reefs (approximately 3°C). Although tolerance rankings of colonies varied between traits, the most heat-tolerant corals (i.e. top 25% of each trait) were found at virtually all reefs, indicating widespread phenotypic variation. Reef-scale environmental predictors explained 12-62% of trait variation. Corals exposed to high thermal averages and recent thermal stress exhibited the greatest photochemical performance, probably reflecting local adaptation and stress pre-acclimatization, and the lowest chlorophyll retention suggesting stress pre-sensitization. Importantly, heat tolerance relative to local summer temperatures was the greatest on higher latitude reefs suggestive of higher adaptive potential. These results can be used to identify naturally tolerant coral populations and individuals for conservation and restoration applications.

Rock and roll: experiments on substrate movement and coral settlement

Rubble is ubiquitous on coral reefs and can aggregate into fields, forming a significant component of the reef substrate. Rubble fields often remain unconsolidated, with the component rubble pieces subject to movement that is dependent on hydrodynamic forcing, rubble size, shape, and other factors. Settlement of corals to rubble fields has long been assumed, but the dynamic movement of rubble pieces has been presumed to deter settlement and is thought to contribute to high post-settlement mortality. Rubble often forms on coral reefs following severe disturbances, and is predicted to increase under climate change, with the potential to impact settlement and recruitment-dependent recovery processes. Through a series of laboratory and field experiments, we demonstrate that corals from broadcast spawning species on the Great Barrier Reef will settle on unstable substrates, even those in constant motion. We also observed more coral spat on settlement tiles suspended in the water column than those fixed to the reef using a common approach to censusing settlement. Sampling of natural rubble on the reef 50 days after a mass-spawning event confirmed the presence of similar numbers of coral settlers on rubble and on tiles fixed to the reef. These results suggest that rubble fields are places of significant settlement for broadcast spawning corals. Suspended tiles were also surprisingly effective in collecting coral settlers, demonstrating that a change in sampling protocol can produce significant variation in settlement data and strengthening the argument for standardisation of settlement-monitoring protocols, particularly at a time of growing need for reliable metrics. These results also suggest that movement of rubble is not precluding settlement outright, but rather post-settlement processes (i.e. competition, predation, shading or burial by shifting rubble) are limiting recruitment to rubble patches. Consequently, rubble stabilisation may increase the survival of spat that have settled in these environments.

Predicting Ground Cover with Deep Learning Models—An Application of Spatio-Temporal Prediction Methods to Satellite-Derived Ground Cover Maps in the Great Barrier Reef Catchments

Livestock grazing is a major land use in the Great Barrier Reef Catchment Area (GBRCA). Heightened grazing density coupled with inadequate land management leads to accelerated soil erosion and increased sediment loads being transported downstream. Ultimately, these increased sediment loads impact the water quality of the Great Barrier Reef (GBR) lagoon. Ground cover mapping has been adopted to monitor and assess the land condition in the GBRCA. However, accurate prediction of ground cover remains a vital knowledge gap to inform proactive approaches for improving land conditions. Herein, we explored two deep learning-based spatio-temporal prediction models, including convolutional LSTM (ConvLSTM) and Predictive Recurrent Neural Network (PredRNN), to predict future ground cover. The two models were evaluated on different spatial scales, ranging from a small site (i.e., <5 km2) to the entire GBRCA, with different quantities of training data. Following comparisons against 25% withheld testing data, we found the following: (1) both ConvLSTM and PredRNN accurately predicted the next-season ground cover for not only a single site but also the entire GBRCA. They achieved this with a Mean Absolute Error (MAE) under 5% and a Structural Similarity Index Measure (SSIM) exceeding 0.65; (2) PredRNN superseded ConvLSTM by providing more accurate next-season predictions with better training efficiency; (3) The accuracy of PredRNN varies seasonally and spatially, with lower accuracy observed for low ground cover, which is underestimated. The models assessed in this study can serve as an early-alert tool to produce high-accuracy and high-resolution ground cover prediction one season earlier than observation for the entire GBRCA, which enables local authorities and grazing property owners to take preventive measures to improve land conditions. This study also offers a new perspective on the future utilization of predictive spatio-temporal models, particularly over large spatial scales and across varying environmental sites.

Dismantling Ships to Revitalize Coral Reefs with Artificial Reefs

Australia's Great Barrier Reef is an immense swath of coral made up of about 2,900 reefs, 600 mainland islands, and 300 coral atolls. It stretches for 2,200 kilometers, ranging in width from 30 km to 740 km. This natural wonder is visible from space and is the largest structure in the world made solely by living organisms. The corals that form this barrier are essential for marine biodiversity and were elected as a World Heritage Site in 1981. However, the Great Barrier Reef faces serious challenges, including bleaching caused by rising temperatures and the impacts of climate change. One strategy for revitalizing reefs is the use of sunken old ships to create artificial reefs. This approach not only conserves the marine environment, but also promotes scientific research and the production of bioproducts. Artificial ship reefs provide substrates for the marine community and simulate environments similar to natural reefs, contributing to the protection and revitalization of this important barrier reef. It is essential to develop strategies to preserve the oceans and mitigate the impacts of human activities, ensuring the survival of this ecosystem and protecting it as a treasure.

Opportunities for meaningful climate change engagement in vulnerable nature settings

Abstract Nature‐based tourism has a unique opportunity, and arguably responsibility, to promote widespread action on climate change. However, research suggests an aversion to providing information that might appear divisive or ‘ruin’ peoples day, particularly in places that are vulnerable to degradation. We explore how exposure to climate change information in vulnerable nature settings influences indicators of (i) the visitor experience and (ii) climate change engagement. Using a quasi‐experimental approach, we provided climate information on tourist boats operating on the Great Barrier Reef, Australia and compared visitor experiences with a control condition where climate information was not provided. Visitor surveys (n = 656) assessed perceptions and experiences. Overall, visitors on trips where climate information was provided were more likely to report that the reef experience exceeded their expectations and did not report any reduction in subjective trip satisfaction. However, we detected minimal effects of climate information on indicators of climate engagement (threat awareness, action awareness, or information seeking), suggesting room for improvement in interpretation approach and design. Indeed, visitors reported high levels of acceptability for incorporating more information about climate change, particularly about actions. Synthesis and applications: These results suggest that providing climate information does not undermine visitor experiences and while further research is required to determine the most effective approach for influencing climate change engagement, an appetite for more information exists. It is possible that what tourism operators are fearful of, may be an opportunity to improve outcomes aligned with both industry and environmental objectives. Read the free Plain Language Summary for this article on the Journal blog.

Offset integrity reduces environmental risk: Using lessons from biodiversity and carbon offsetting to inform water quality offsetting in the catchments of the Great Barrier Reef

Environmental offsetting has been developed as a mechanism to facilitate the benefits from economic development while avoiding or minimizing environmental harm. This is achieved by compensating for environmental impacts at one location by generating equivalent environmental improvements elsewhere. However, experience with biodiversity and carbon offsetting indicates it can be difficult to ensure the integrity of offsets. Under recent legislation in the catchments of the Great Barrier Reef (GBR), Australia, it is mandatory for water quality emissions from new or expanded point source development to be offset by reducing pollution elsewhere, frequently through reducing non-point source pollution (NPSP). Therefore, informed by experience with biodiversity and carbon offsetting, we summarised sources of uncertainty in NPSP reduction that would influence water quality offset integrity; estimated the maximum potential demand for water quality offsets from sewage treatment plants, the largest point source emitter of total nitrogen (TN) in the GBR catchments, between 2018 and 2050; and discussed the implications of both on the ability of offsetting to counterbalance the impact of economic development in catchments where nitrogen loads have a large influence on the health of important GBR ecosystems. The catchments surrounding the population centres of Cairns and Mackay had both a potentially high future demand for nitrogen water quality offsets and nitrogen loads with a strong influence on the health of the GBR. Consequently, any low integrity water quality offsets in these catchments could jeopardise progress toward the water quality improvements needed to ensure the continued health of the GBR. Water quality offsetting has numerous strengths as a policy instrument however substantial uncertainties remain related to environmental outcomes. Until further research can reduce these uncertainties, water quality offsets that are implemented near increased point source emissions and have a high certainty of effectiveness may provide a balance between scientific rigour and policy workability.

Exotic ceramics from the Murray Islands, Eastern Torres Strait

The discovery of Lapita-decorated ceramics in the Massim region and southern Papua New Guinea coast, along with finds of pottery on Jiigurru (Lizard Island) in the Great Barrier Reef and in the Torres Strait demonstrates the presence of seaborne movements in the Coral Sea as early as ∼ 2900–2500 cal. BP (Ulm et al. 2024). As an introduced Austronesian technology, ceramics are central to archaeological understandings of early maritime routes and cross-cultural relationships between Island Southeast Asians, Papuan peoples, and Indigenous Australians. In the Torres Strait only a small number of pot sherds have been reported. Those found in the western islands were probably made using local materials, while the ceramics from eastern islands have been sourced to southern Papua New Guinea (Carter 2004). In this paper, petrographic examination of sherd tempers recently recovered from the Eastern Torres Strait islands of Dauar and Waier indicate derivation from the Purari River basin in southern New Guinea. A distinct granitic temper sherd dated to ∼ 2600 cal. BP differs from known sherd tempers and likely originates from the Western Torres Strait. The provenance of this granitic sherd is consistent with the early movement of ceramic-making groups along the south New Guinea coast and into the Torres Strait, and with the ability of these groups to make long-distance passages in the Arafura and Coral Seas.

Abiotic triggers for maximising germling numbers in Asparagopsis taxiformis (Rhodophyta, Bonnemaisoniales) via tetrasporogenesis

AbstractThere is global interest in cultivating the red alga Asparagopsis taxiformis due to its efficacy as a potent anti-methanogenic feed supplement and as a biofilter for the bioremediation of nutrient-enriched waters. However, the development of A. taxiformis cultivation is currently hindered by a lack of information about the conditions required to maximise tetraspore release and thus secure a reliable source of germlings for out-planting. In this study, we examined the effects of temperature, irradiance, and standard nutrient supplementation (F/8, potassium iodide (KI) and arsenic trioxide (As2O3)) on the number of germlings produced per tetrasporophyte, using a strain of A. taxiformis widespread within the Great Barrier Reef, Australia. Temperature, irradiance and nutrient supplementation played a pivotal role in germling numbers, which was optimised at 22 °C under 7 µmol photons m−2 s−1 and with supplementation of F/8 nutrient media, arsenic trioxide (As2O3; 98 µg L−1) and potassium iodide (KI; 166 µg L−1). Once tetrasporophytes were removed from these inducing conditions, tetrasporogenesis ceased within 12 days. In a further five-week experiment investigating the effect of separate supplementation of As2O3 and KI, germling numbers were maximised under supplementation with either As2O3 or As2O3 + KI, with the relative growth rate of tetrasporophytes maximised under supplementation with F/8 + As2O3 + KI. Under optimum conditions, an average of 3,261 ± 826 (SD) germlings were produced per tetrasporophyte over a five-week period. Our results provide a strong starting point for developing hatchery protocols for generating a reliable supply of germlings for nursery cultivation in tropical settings.

Comparison of juvenile coral assemblages between Australia’s Coral Sea and Great Barrier Reef Marine Parks

Densities of juvenile corals (≤ 50 mm diameter) are expected to vary between geographically isolated and more spatially proximate reefs, and may constrain local recovery potential. This study compared juvenile coral densities and their relationships with local abundance of adult congenerics at geographically isolated reefs within Australia’s Coral Sea Marine Park (CSMP) versus highly connected reefs within the Great Barrier Reef Marine Park (GBRMP). Three latitudinal regions and two habitats (reef crest and slope) were examined within both marine parks to test for spatial variation. Densities of juvenile corals in the CSMP (13.99 ± 0.72 juveniles 10 m−2) were significantly lower compared to those in the GBRMP (23.72 ± 1.86 juveniles 10 m−2). Specifically, there were significantly less Acropora and Pocillopora juveniles on the reef crest in the central CSMP compared to the GBRMP. Relationships between juvenile abundance and percent coral cover were greatest for Acropora and Pocillopora in the GBRMP. This may be due to the low range of coral cover estimates recorded in the CSMP, especially for Acropora (0–15%). Low juvenile coral abundance, and in particular, the lack of fast-growing juvenile corals (e.g., Acropora) in the Central CSMP, in combination with low cover of broodstock (particularly Acropora) on CSMP reefs, poses a significant constraint on post-disturbance recovery capacity, possibly attributable to isolation and limited connectivity among reefs in this region.

Highest ocean heat in four centuries places Great Barrier Reef in danger

Mass coral bleaching on the Great Barrier Reef (GBR) in Australia between 2016 and 2024 was driven by high sea surface temperatures (SST)1. The likelihood of temperature-induced bleaching is a key determinant for the future threat status of the GBR2, but the long-term context of recent temperatures in the region is unclear. Here we show that the January–March Coral Sea heat extremes in 2024, 2017 and 2020 (in order of descending mean SST anomalies) were the warmest in 400 years, exceeding the 95th-percentile uncertainty limit of our reconstructed pre-1900 maximum. The 2016, 2004 and 2022 events were the next warmest, exceeding the 90th-percentile limit. Climate model analysis confirms that human influence on the climate system is responsible for the rapid warming in recent decades. This attribution, together with the recent ocean temperature extremes, post-1900 warming trend and observed mass coral bleaching, shows that the existential threat to the GBR ecosystem from anthropogenic climate change is now realized. Without urgent intervention, the iconic GBR is at risk of experiencing temperatures conducive to near-annual coral bleaching3, with negative consequences for biodiversity and ecosystems services. A continuation on the current trajectory would further threaten the ecological function4 and outstanding universal value5 of one of Earth’s greatest natural wonders.

Bibliometric visualization analysis of 'World Heritage' topic in web of science database using citespace

On November 22-23, 2023, UNESCO will convene its 24th session of the General Assembly of States Parties in Paris. In light of this, to ensure the ongoing dynamism and adaptability of knowledge pursuits in the realm of world heritage, this paper conducts a quantitative analysis of world heritage documents within the Web of Science (WOS) database. Leveraging CiteSpace 6.1.R6 software, we visually examine 5,208 documents with the topic "World Heritage" retrieved from 1979 to 2023. The research outcomes reveal the following key insights: (1) The literature in the field of world heritage research demonstrates a steadily increasing trend, with notable explosive growth starting in 2009 and reaching its peak in 2019. (2) Examination of collaborations with prominent authors, affiliated institutions, and contributing countries highlights the absolute superiority of the United States and Australia in the world heritage domain, attributed to their rich heritage and robust academic systems. Despite China ranking second in document publications, there is a need for increased international collaboration. (3) The most influential keywords include "Community", "The Great Barrier Reef" and "Managing World Heritage". (4) Heritage tourism, encompassing satisfaction, motivation, loyalty, and place attachment, emerges as the largest keyword cluster in the field of world heritage. (5) Recent research trends and hotspots include "Risk", "Building", "Intention", "Support", and "Stone". The research results provide a more comprehensive and systematic overview perspective for the world heritage field, which fills the gap and promotes the knowledge pursuit in the world heritage field.

Advancing projections of crown-of-thorns starfish to support management interventions

Outbreaks of corallivorous Crown of Thorns Starfish (Acanthaster spp.; CoTS) cause substantial coral mortality throughout the Indo-Pacific, particularly on the Great Barrier Reef (GBR). Refining CoTS population density modelling and understanding the disparities between real-world observations and model predictions is crucial for developing effective control strategies. Using a spatially explicit ecosystem model of the GBR, we compared CoTS density model predictions to observations and incorporated a new zone-specific mortality rate to account for differences in predation of CoTS between fished and protected reefs. We found high congruence between predictions and observations: ∼81 % of categorical reef level CoTS densities matched or only differed by one category. However, underpredictions increased with higher observed densities. Zone-specific CoTS mortality reduced severe underpredictions from 7.1 % to 5.6 %, which is critical for managers as underpredictions indicate missing outbreaks where targeted culling is necessary, but also lead to underestimated coral loss attributed to CoTS outbreaks. Reef protection status affected prediction accuracy, highlighting the importance of further research on in situ CoTS mortality rates. The location of a reef inside or outside the “initiation box”, a speculative area of primary outbreaks (i.e., initial abrupt population increases) on the GBR, also influenced accuracy, with exact predictions more likely outside. Accurately modelling initiation box dynamics is challenging due to limited empirical data on CoTS outbreaks, highlighting the need for focussed research on outbreak dynamics to enhance predictive accuracy. Spatial factors, such as region and shelf position, contributed to the variance between observations and predictions, underscoring the importance of the spatial-temporal context of each observation. Observations of CoTS can help refine model predictions, guide targeted control measures, and contribute to effective ecosystem management for the long-term resilience of the GBR and other reefs targeted by CoTS throughout the Indo-Pacific.

Geochemical fingerprints of early diagenesis in shallow-water marine carbonates: Insights from paired δ44/40Ca and δ26Mg values

We present a suite of major element stable isotope (δ13C, δ18O, δ44/40Ca, δ26Mg), and selected trace element (Sr/Ca and Mg/Ca) data from Pleistocene sediments from the Great Barrier Reef (IODP Expedition 325), as well as Holocene surface sediments from the Bahamas (Triple Goose Creek, Andros Island) to identify geochemical fingerprints associated with early marine and meteoric diagenesis. Sediments from both sites exhibit co-variation in δ13C and δ18O values, depletion in trace elements, and distinct geochemical trends in δ26Mg and δ44/40Ca values that reflect differences between diagenetic alteration in marine and meteoric fluids. While marine diagenesis results in lower Sr/Ca ratios, higher δ44/40Ca values, and little effect on bulk sediment δ26Mg values, meteoric diagenesis leads to lower Sr/Ca ratios, lower δ44/40Ca values, and lower δ26Mg values. Using a numerical model of diagenesis, we show how diagenetic alteration by meteoric fluids must occur after an initial period of diagenetic alteration by marine fluids, a two-stepped diagenetic history that complicates the interpretation of geochemical data in meteorically altered marine carbonate sediments. Finally, we discuss how paired metal isotopes may serve as a robust indicator of meteoric alteration in ancient shallow-water marine carbonate sediments.

Blue Economy Risk Factors and Resilience Strategies: Evidence from the Great Barrier Reef

Blue Economy Risk Factors and Resilience Strategies: Evidence from the Great Barrier Reef

The Influence of Coral Reef Spur and Groove Morphology on Wave Energy Dissipation in Contrasting Reef Environments

AbstractCoral reefs protect coastlines from inundation and flooding and serve over 200 million people globally. Wave transformation has previously been studied on coral reef flats with limited focus on forereef zones where wave transformation is greatest during high‐energy conditions. This study investigates the role of forereef spur and groove (SaG) morphology in wave energy dissipation and transmission at the reef crest. Using XBeach on LiDAR‐derived bathymetry from One Tree Island in the southern Great Barrier Reef, we reproduced dissipation rates comparable to SaG field studies. We examined how wave energy dissipation differs between realistic bathymetry and those with SaG features removed, demonstrating an up to 40% decrease in dissipation when SaG features are absent. We then investigated changes to wave energy dissipation and wave transmission at the reef crest based on IPCC AR5 emission scenarios (RCP2.6 and RCP8.5) and a total disaster scenario (TD) for the year 2100. For RCP2.6, an increase in wave heights of 0.8 m and an increase in water level of 0.3 m resulted in a two‐fold increase in dissipation rates. For RCP8.5 and TD, with no increase in incident wave height, dissipation rates were 29% and 395% lower than RCP2.6. This resulted in increased wave transmission at the reef crest by 1.8 and 2.7 m for the RCP8.5‐ and TD based models, respectively, when compared to the RCP2.6‐based model. The results from our novel modeling approach of using long‐shore varying accurate bathymetry on forereefs show increased wave energy dissipation rates with implications for reducing coastal flooding and island inundation on reef‐lined coasts.

Marine sponge microbe provides insights into evolution and virulence of the tubercle bacillus.

Reconstructing the evolutionary origins of Mycobacterium tuberculosis, the causative agent of human tuberculosis, has helped identify bacterial factors that have led to the tubercle bacillus becoming such a formidable human pathogen. Here we report the discovery and detailed characterization of an exceedingly slow growing mycobacterium that is closely related to M. tuberculosis for which we have proposed the species name Mycobacterium spongiae sp. nov., (strain ID: FSD4b-SM). The bacterium was isolated from a marine sponge, taken from the waters of the Great Barrier Reef in Queensland, Australia. Comparative genomics revealed that, after the opportunistic human pathogen Mycobacterium decipiens, M. spongiae is the most closely related species to the M. tuberculosis complex reported to date, with 80% shared average nucleotide identity and extensive conservation of key M. tuberculosis virulence factors, including intact ESX secretion systems and associated effectors. Proteomic and lipidomic analyses showed that these conserved systems are functional in FSD4b-SM, but that it also produces cell wall lipids not previously reported in mycobacteria. We investigated the virulence potential of FSD4b-SM in mice and found that, while the bacteria persist in lungs for 56 days after intranasal infection, no overt pathology was detected. The similarities with M. tuberculosis, together with its lack of virulence, motivated us to investigate the potential of FSD4b-SM as a vaccine strain and as a genetic donor of the ESX-1 genetic locus to improve BCG immunogenicity. However, neither of these approaches resulted in superior protection against M. tuberculosis challenge compared to BCG vaccination alone. The discovery of M. spongiae adds to our understanding of the emergence of the M. tuberculosis complex and it will be another useful resource to refine our understanding of the factors that shaped the evolution and pathogenesis of M. tuberculosis.