The Balun Mahai Basin (BLMH), located in the northern Qaidam Basin (QB), is endowed with substantial brine resources; however, the genetic mechanisms and potential of these brine resources remain inadequately understood. This study investigated the intercrystalline brine (inter-brine) in BLMH, performing a comprehensive geochemical analysis of elemental compositions and H-O-Sr isotopes. It evaluated the water source, solute origin, evolutionary process, and genetic model associated with this brine. Moreover, a mass balance equation based on the 87Sr/86Sr isotopic ratio was developed to quantitatively evaluate the contributions of Ca-Cl water and river water to the inter-brine in the study area. The results suggest that the hydrochemical type of inter-brine in the north part of BLMH is Cl-SO4-type and in the south part is Ca-Cl-type. The solutes in brine are mainly derived from the dissolution of minerals such as halite, sylvite, and gypsum. The hydrochemical process of brine is controlled by evaporation concentration, water–rock interaction, and ion exchange interaction. Hydrogen and oxygen isotopes suggest that the inter-brine originates from atmospheric precipitation or ice melt water and has experienced intense evaporation concentration and water–rock interaction. The strontium isotopes suggest that the inter-brine was affected by the recharge and mixing of Ca-Cl water and river water, which controlled the spatial distribution and formation of brine hydrochemical types. The analysis of ionic ratios suggest that the inter-brine is derived from salt dissolution and filtration, characterized by poor sealing and short sealing time in the salt-bearing formation. The differences in hydrochemical types and spatial distribution between the north and the south are fundamentally related to the replenishment and mixing of these two sources, which can be summarized as mixed origin model of “dissolution and filtration replenishment + deep replenishment” in BLMH.
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