G1 Genotype Research Articles

Analysis of the Genotype Interaction of Four-Year-Old Populus euramericana Using the BLUP-GGE Technique

Poplar is a commercially globalized tree species that provides energy and economic and ecological support. To evaluate the twelve hybrid Populus euramericana genotypes developed in China, a total of six locations were selected for the current study, comprising four climatic types and three kinds of soil. The objective of this study was to characterize the early stages of Populus euramericana growth and to test the locations; to identify good genotypes for stable and high yield; and to offer practical experience and technical assistance for further breeding of Populus euramericana. The main research methods included the statistical description of tree heights and diameter at breast height (DBH), the establishment of a mixed effect model to analyze the genotype and environmental interaction effect (G × E), the use of best linear unbiased prediction (BLUP) values as GGE biplots to achieve visual screening, and the calculation of genetic parameters. Results show that the genotype effect (G), the environmental effect (E), and the G × E interaction is significant; the BLUP value has a strong correspondence with the observed value; the goodness of fit of all biplots can explain more than 85% of the variation; the broad-sense heritability of tree height and DBH is 0.13 and 0.3, respectively; and the type-B correlation is 0.36 and 0.65. In addition, G5, G7, G4, and G9 are excellent genotypes with high yield and stability; using the tree height and DBH of these four genotypes can achieve genetic gains of 3.35% and 0.81%. The conclusions of this study are as follows: the rank-change and scale-effect interactions were distinct; G, E, and G × E all had a significant effect on the growth of poplar trees during their early stage; G4, G5, G7, and G9 genotypes have favorable development characteristics; and N146 is an excellent source of paternal genetics.

Genetic Inheritance and Yield Performance of Bambara Groundnut Genotypes Based on Seed Weight

Though many studies on gene action of yield and yield related traits have been conducted on bambara groundnut, none of these focused on seed size and weight. Hence, this study was conducted to established inheritance pattern based on seed weight. Five bambara groundnut genotypes from Nigeria, namely Giwa, Duna, Cancaraki, Jatau, and Maiki were evaluated in randomized complete block design with three replication. The seeds of each genotype were grouped into three seed weight categories namely large, medium and small-seed size. Data were collected on 12 agromorphological traits and statistical analysis was conducted using SAS version 9.4 and variance component and heritability were estimated for each character. The present study revealed significant levels of variability among the five genotypes, fifteen combinations of seed size and genotypes, seed size categories and interaction of genotypes and seed size categories for most of the yield and yield components. High values of genotypic coefficient of variation (GCV) coupled with genetic advance (GA) were reported for the number of medium seed per plant, total large seed weight per plant, total medium seed weight per plant and hundred seeds weight, while moderate GCV was observed for the total number of seed per plant. But the phenotypic coefficient of variation (PCV) was higher than GCV for all characters. Moderate broad-sense heritability for 100SW is responsible for the selection of this particular trait. Among the combination, G5S is the best for yield and yielding traits, while genotypes G3 is the best for yield and yield components, whereas among the seed size categories small seed size showed the high yield and yielding components. Keywords: Inheritance, yield performance, Bambara groundnut, seed weight.

Non-targeted metabolomic analysis of the variations in the metabolites of two genotypes of Glycyrrhiza uralensis Fisch. under drought stress

Drought stress is one of the important abiotic stresses that restrict the growth of plants. Plants acclimatize themselves to the stress by reprogramming their metabolic pathways. Therefore, understanding the metabolic mechanisms of plants is of great importance to meet the challenge of water shortage. Licorice (Glycyrrhiza uralensis Fisch.) is a commonly used herb that is widely distributed around the world. Nevertheless, the variation of integrated metabolites in licorice under drought stress are still unclear. In this study, the non-targeted metabolomic technology was applied for the first time to comparatively investigate the metabolites changes under different degree of drought stress (slight, moderate, and intense) of two morphologically distinct genotypes of licorice from Gansu (G1) and Xinjiang (G2) provinces. Under the drought conditions, the length and dry weight of the roots of licorice were affected. Different degrees of drought caused antioxidant enzyme activities in both of the two genotypes to increase first and then decrease, and the increase in the G1 genotype was greater than that of the G2 genotype. The amino acid metabolism, flavonoid metabolism and other metabolic pathways were disrupted by drought stress. Additionally, a higher amount of amino acids such as tryptophan and tyrosine was observed in the root of the G2 genotype, and the increase of phospholipid content in the G2 genotype depended on the deepening of drought stress. Slight or moderate drought stress was beneficial to the accumulation of flavonoids. The glycosylation modification of flavonoids and accumulation patterns of jasmonic acid and abscisic acid had differences between genotypes. Collectively, this study provided new insights into the potential biochemical pathways of licorice or other legumes in response to drought and a fundamental framework to improvement the medicinal value of licorice.

Sequence analysis, intra-genotyping variation, and phylogenetic study of nad1 gene in Echinococcus granulosus sensu lato genotypes from intermediate hosts in southwestern Iran.

Cystic echinococcosis (CE) is caused by the larval stage of Echinococcus granulosus sensu lato (s. l.). The disease is cosmopolitan, and Iran is a highly endemic area for CE. This parasite exhibits high genetic diversity, which can be related to its life cycle, transmission, and pathogenesis. This study was aimed at determining the phylogenetic relationship and intra-genotyping variation of E. granulosus s.l. in a vast area in the southwest of Iran (SWI). Eighty hydatid cyst isolates of intermediate hosts (i.e., cattle, sheep, goat, buffalo, camel, and human) were collected. The sequence analysis of the nad1 gene exhibited the three genotypes of G1 (n = 70, 87.5%), G3 (n = 8, 10%), and G6/G7 (n=2, 2.5%). Also, 16, 2, and 1 unique haplotypes were identified for the G1, G3, and G6/G7 genotypes, respectively. According to the phylogenetic tree topology, the nad1 gene similarities were found for some G1 isolates in some vast areas, and the G1 genotype showed a heterogeneous population worldwide. The only SWI G6/G7 haplotype was at a distant position in E. canadensis clade, indicating the notable difference of this haplotype from other isolates from Iran and other countries. The presence of the G6/G7 genotype in the SWI may be due to the transmission of the genotype from other regions or the role of camel/wild boar or other possible hosts in the expansion of this genotype in SWI. The results of the present study can be used in CE control programs, molecular epidemiology, and phylogenetic studies in Iran and other countries for future goals.

The association of cytochrome 7A1 and ATP-binding cassette G8 genotypes with type 2 diabetes among Jordanian patients.

Increased cholesterol levels were found to be associated with diabetes mellitus type II (DM2). The cholesterol is metabolized by cytochrome 7A1 (CYP7A1) and transported in the intestine by ATP-binding cassette G8 (ABCG8). Genetic variants in CYP7A1 and ABCG8 genes can affect the cholesterol levels. The aim of this study is to compare the frequency of CYP7A1 rs3808607 and ABCG8 rs11887534 and rs4148217 genotypes between healthy and DM2 subjects from Jordanian population. A total of 117 DM2 patients and 100 healthy controls, of Jordanian Arabic origin, were genotyped for CYP7A1 rs3808607 and ABCG8 rs11887534 and rs4148217 genetic variants using polymerase chain reaction (PCR) followed by restriction fragment length polymorphism technique. The study showed that homozygosity of rs3808607 (A-204C) genotype in CYP7A1 was significantly higher in DM2 patients (ANOVA, p<0.05) with an odd ratio of 2.66, but rs11887534 (G55C) and rs4148217 (C1199A) genetic polymorphisms in ABCG8 were found in comparable frequencies in both healthy and DM2 subjects. The results of this study indicate that CYP7A1 rs3808607 genetic polymorphism is associated with DM2. Further clinical studies are required to confirm this finding among DM2 patients of Jordanian origin.

AMMI and GGE biplot analysis for yield performance and stability assessment of selected Bambara groundnut (Vigna subterranea L. Verdc.) genotypes under the multi-environmental trials (METs)

The stability and high yielding of Vigna subterranea L. Verdc. genotype is an important factor for long-term development and food security. The effects of G × E interaction on yield stability in 30 Bambara groundnut genotypes in four different Malaysian environments were investigated in this research. The experiment used a randomized complete block design with three replications in each environment. Over multiple harvests, yield component traits such as the total number of pods per plant, fresh pods weight (g), hundred seeds weight (g), and yield per hectare were evaluated in the main and off-season in 2020 and 2021. Stability tests for multivariate stability parameters were performed based on analyses of variance. For all the traits, the pooled analysis of variance revealed highly significant (p < 0.01) variations between genotypes, locations, seasons, and genotypes by environment (G × E interaction). A two-dimensional GGE biplot was generated using the first two principal components (axis 1 and axis 2), which accounted for 94.97% and 3.11% difference in GEI for yield per hectare, respectively. Season and location were found to be the most significant causes of yield heterogeneity, accounting for 31.13% and 14.02% of overall G + E + G × E variation, respectively, according to the combined study of variance. The GGE biplot revealed that the three winning genotypes G1, G3, and G5 appear across environments whereas AMMI model exposed genotypes viz G18, G14, G7, G3, G1, and G5 as best performer. Based on ideal genotype ranking genotype G1 was the best performer, with a high mean yield and high stability in the tested environment. According to the AEC line, genotypes G1 and G3 were extremely stable, while genotypes G2 and G4 were low stable, with a high average yielding per hectare. A GGE and AMMI biplot graphically showed the interrelationships between the tested environment and genotypes, classified genotypes into three categories as well as simplifying visual evaluations, according to this investigation. According to our results, breeding could improve yield production, and the genotypes discovered could be recommended for commercial cultivation.

English

In Pakistan, wheat used as a staple food that provides necessary nutrients and has a wide adaptation in different environments. A set of 18 wheat (Triticum aestivum L.) genotypes were tested at 23 different locations (Environments) in all over Pakistan. The AMMI biplot analysis was used to identify the genotypes performance across the environments and Genotype Environment Interaction (GEI). The G5 and G6 genotypes performed excellent across the 23 environments, therefore their yield performance are stable at all locations of Pakistan during 2015-16. While, G4, G5, G11, G17 performed very well at all locations during 2016-17. The performance of G5 genotype remains stable in both year of study at all locations so we strongly recommend for cultivation in any region of Pakistan. The G1 (E13), G16 (E14), G11 (E2), G3 &amp; G5 (E18), G14 (E15, E19), and G7, G10 (E10) these genotypes perform well in specific environment and so respective genotypes recommended for specific region where performance remains excellent. The selection of ideal environment in which performance of genotypes are excellent. The three environments (E4, E1 and E10) are best environment in which all genotypes perform very well during both years of study

English

Sorghum is an important crop in Ethiopia. However, its productivity is low owing to lack of farmer-preferred and stable improved varieties. To identify suitable cultivars, multi-environment evaluation of sorghum genotypes was carried out at four locations for two years. The result of AMMI ANOVA showed that genotype (G), environment (E) and genotype-environment interaction (G&times;E) significantly (P&lt;0.01) affected sorghum grain yield. The G&times;E term was partitioned into two significant Interaction Principal Component Axes; where they captured 65.89% of the G&times;E variance. Genotypes G9, G10 and G12 are highly affected by environmental changes as they had higher G&times;E. Genotypes G1, G7, G2, G5, G11 and G8 had relatively low G&times;E, indicating lower influence of the environments on their performance. The GGE analysis showed that the first two PCAs explained 75.11% of the GGE variance. Genotypes G8 and G3 were the highest-yielding genotypes and significantly out yielded the checks. Genotypes G1, G12, G7 and G8 were stable genotypes. G8 was the most desirable genotype followed by G3, G7 and G6. G8 (PGRC/E#222878 &times; KAT-369-1) was officially released and given a local name called Raya. This white seeded variety is preferred by farmers for various food preparations (recipes), and it commands a premium price at the market. It can give high and stable yield in the unstable environmental conditions of Northeast Ethiopia. If used in its appropriate niche, the variety can contribute to the increase of sorghum productivity, and income of the cultivators. Key words: AMMI, Desirable genotype, GGE, G&times;E, sorghum, stability

Whole Genome Sequencing and Comparative Genome Analyses of Chlamydia abortus Strains of Avian Origin Suggests That Chlamydia abortus Species Should Be Expanded to Include Avian and Mammalian Subgroups.

A variety of Chlamydia species belonging to the Chlamydiaceae family have been reported in birds. Until recently, C. psittaci was considered to be the most common avian species, although found in both birds and mammals, while C. abortus has only been found in mammals. Recently, a new group of avian C. abortus strains with worldwide distribution in various wild bird families has been described. In this study, whole genome sequencing (WGS) of three of these strains (15-70d24, 15-49d3 and 15-58d44, representing genotypes G1, G2 and 1V, respectively) that were isolated from wild birds were analysed. Genome assemblies based on both short-read Illumina and long-read Nanopore data indicate that these avian C. abortus strains show features characteristic of both C. abortus and C. psittaci species, although phylogenetic analyses demonstrate a closer relationship with classical C. abortus strains. Currently, species classification established by the ICSP Subcommittee on the taxonomy of Chlamydiae, determines that these avian C. abortus strains 15-70d24, 15-49d3 and 15-58d44 should be classified as C. abortus. However, the authors of this study conclude that the current taxonomic definition of C. abortus is outdated and should be amended to include two subgroups, mammalian and avian, the latter of which would include all isolates so far referred to as atypical C. psittaci or C. psittaci/C. abortus intermediates.

Comparison of the multi-epitope recombinant antigen DIPOL and hydatid fluid for the diagnosis of patients with cystic echinococcosis

The use of serological tests containing multiple immunodominant antigens rather than single antigens have the potential to improve the diagnostic performance in Cystic Echinococcoses (CE) as a complement tool to clear the inconclusive imaging data. Here, we comparatively evaluated the diagnostic value of Hydatid Fluid (HF) and the recently described recombinant multi-epitope antigen DIPOL in IgG-ELISA in a clinically defined cohort of CE patients. The serum samples from 149 CE patients were collected just before surgical or Percutaneous- Aspiration- Injection- Reaspiration (PAIR) procedures. Additionally, serum samples of patients with other parasitic infections (n=49) and healthy individuals (n=21) were also included in the study as controls. To investigate the association between the genotype of the parasite and DIPOL, cyst materials from 20 CE patients were sequenced. In terms of overall sensitivity, HF was higher than DIPOL (82.55%,78.52%, respectively). However, while the sensitivity of HF was higher than DIPOL in patients with active and transitional cysts (83.3%, 75.4%, respectively), sensitivity of DIPOL in inactive cysts was higher compared to HF (95.6%, 78.3%, respectively). The sensitivity of DIPOL depending on cyst stage was statistically significant (P= 0.041). In terms of specificity, DIPOL was found to be better than HF (97.71%, 91.43%, respectively). By genotyping, the majority of 20 patients showed G1 genotype (80%). All patients harboring G3 and G1/G3 cyst genotypes were positive with both antigens, while 87.5% of patients with G1 genotype were seropositive with HF and 75% with DIPOL. The overall sensitivity and high specificity of DIPOL suggest that this recombinant protein containing immunodominant epitopes is a potential substitute for the HF by serological tests for the diagnosis of CE.

Investigation of Group A Rotavirus G10, G12 Genotypes Emerging in Patients with Acute Gastroenteritis in a Tertiary Care Hospital

Rotaviruses are the most common cause of viral gastroenteritis with the highest mortality and morbidity rates in children aged 0-5 years. The aim of this study was to determine the frequency of rotavirus infection in patients whose stool samples were sent to microbiology laboratory to investigate the etiology of diarrhea, to investigate the rotavirus genotypes that are common in our region and G10, G12 genotypes that have recently become common in the world. Fecal samples of 476 patients aged between 0-92 years who applied between November 2016 and February 2018 were studied via immunochromatographic rapid test and enzyme-linked immunosorbent assay (ELISA) methods. ELISA positive samples were studied by nested reverse transcriptase chain reaction (RT-PCR) and genotyped by agarose gel electrophoresis. Rotavirus was found positive in 18.3% and 17% of stool samples by immunochromatographic test and ELISA, respectively. All ELISA positive samples were also detected as positive by RT-PCR. 18.5% of female patients and 15.7% of male patients were found to be positive and rotavirus positivity was not statistically significant between genders. The frequency of rotavirus in different age groups was 23.5% (6-12 years), 17.3% (13-24 months) and 16% (25-36 months). It was determined that rotavirus cases were most common in the spring. G1, G2, G3, G4, G9, G10, and G12 were detected in 37%, 7.4%, 16.1%, 6.2%, 9.9%, 2.5%, 26% of the samples, respectively. G12 was the most common genotype after G1. The most common G and P genotype combination was G1P[8] (17.2%). This was followed by G12P[8] (11.11%) and G3P[8] (11.11%). P[8] (53%) was found to be the dominant P genotype. In this study, it was observed that rotavirus, which is the cause of childhood diarrhea, can also be encountered in advanced ages and even new genotypes that infect humans worldwide may also be the causative agents. Therefore, we concluded that it is important to investigate new genotypes such as G10 and G12 in molecular epidemiological studies.

Echinococcus granulosus sensu stricto and E. canadensis are distributed in livestock of highly endemic area in the Peruvian highlands

The prevalence of cystic echinococcosis is high in many livestock areas of Peru, where intermediate hosts such as sheep, cattle, and South American camelids can be infected. Several species of E. granulosus have been described in relation to its genetic diversity and distribution. The aim of this study was to determine the species of E. granulosus sensu lato (s.l.) metacestodes collected from sheep, cattle, swine and camelids at different localities in the department of Puno, in the southern highlands of Peru. One hundred and fifty-two echinococcal cysts were collected from 10 different locations. E. granulosus s.l. species were determined by amplification of the Internal transcribed spacer 1 of the ribosomal DNA using a Nested PCR-RFLP technique. The cytochrome C oxidase 1 gene (450 bp) was also amplified and sequenced in samples with different RFLP patterns. Cysts samples were collected from sheep (39.5%), cattle (32.9%), pigs (15.8%) and alpacas/llamas (11.8%). E. granulosus sensu stricto (G1 genotype) was mainly identified in all animal hosts, while, the E. canadensis (G7) was only identified in cysts from pigs and alpacas. This is the first report of E. granulosus sensu stricto and E. canadensis in llamas and alpacas, respectively. Knowledge of species and molecular epidemiology of E. granulosus s.l. in endemic areas in Peru may help to evaluate preventive programs, understand disease transmission, as well as improve vaccine and chemotherapy effectiveness.

Evaluation of Salinity Tolerant Wheat (Triticum aestivum L.) Genotypes through Multivariate Analysis of Agronomic Traits

Background: Wheat (Triticum aestivum L.) is the second major global cereals mostly grown in winter season which led wheat plants to suffer with salinity stress. Twenty to thirty percent of the arable land of the world is present in the saline area. Therefore, it is necessary to develop salinity tolerant wheat varieties to meet the future food demand. Methods: A field experiment was carried out during November 2018 to March 2019 to observe the effect of salinity on yield and other desired plant characters and finally screening of wheat genotypes for salinity tolerance. The experiment was laid out in a complete randomized design containing three treatments with three replications. The treatments were three levels of salinity such as control, 8 dS m-1 and 15 dS m-1. Multivariate and principal components analysis was executed to evaluate yield and other plant characters. Result: The results of the experiment revealed that different plant characters showed wide range of variation under different salinity levels. Biplot analysis considering PC1 and PC2 revealed that grain yield was positively correlated with grain spike-1, spike length, thousand seed weight and total tiller plant-1. Correlation study also revealed that total tiller plant-1, spikelet spike-1, grain spike-1 and thousand seed weight showed significant and positive relation with grain yield plant-1. On the basis of yield reduction percent and yield the genotypes G12 (2.51 g), G16 (2.49 g) and G4 (2.19 g) were found suitable for 15 dS m-1 salinity.

Extracellular vesicles are the primary source of blood-borne tumour-derived mutant KRAS DNA early in pancreatic cancer.

Up to now, the field of liquid biopsies has focused on circulating tumour DNA and cells, though extracellular vesicles (EVs) have been of increasing interest in recent years. Thus, reported sources of tumour‐derived nucleic acids include leukocytes, platelets and apoptotic bodies (AB), as well as large (LEV) and small (SEV) EVs. Despite these competing claims, there has yet to be a standardized comparison of the tumour‐derived DNA associated with different components of blood. To address this issue, we collected twenty‐three blood samples from seventeen patients with pancreatic cancers of known mutant KRAS G12 genotype, and divided them into two groups based on the time of patient survival following sampling. After collecting red and white blood cells, we subjected 1 ml aliquots of platelet rich plasma to differential centrifugation in order to separate the platelets, ABs, LEVs, SEVs and soluble proteins (SP) present. We then confirmed the enrichment of specific blood components in each differential centrifugation fraction using electron microscopy, Western blotting, nanoparticle tracking analysis and bead‐based multiplex flow cytometry assays. By targeting wild type and tumour‐specific mutant KRAS alleles using digital PCR, we found that the levels of mutant KRAS DNA were highest in association with LEVs and SEVs early, and with SEVs and SP late in disease progression. Importantly, we established that SEVs were the most enriched in tumour‐derived DNA throughout disease progression, and verified this association using size exclusion chromatography. This work provides important direction for the rapidly expanding field of liquid biopsies by supporting an increased focus on EVs as a source of tumour‐derived DNA.

Selection criteria for yield in safflower (Charthamus tinctorius L.) genotypes under rainfed conditions

This research was conducted on 20 safflower genotypes and lasted 3 years (2014-2016) in the Central Anatolia Region of Turkey. The experiments were conducted in randomized block design with four replications. The relationships among yield 9 other traits in safflower genotypes were investigated. As the average of three years, the greatest seed yield (SY) was obtained from genotype G5 (PI 451952) with 3156.3 kg·ha-1. It was followed by genotypes G4 (PI 525458) and G9 (PI 306686) with 3013.2 and 2977.1 kg·ha-1, respectively. Among the standard cultivars, the greatest seed yield (2750.4 kg·ha-1) was obtained from the Dinçer cultivar. The greatest oil content (OC) was obtained from the genotype G11 (PI 537665) with 36.5%. It was followed by the genotypes G9 (PI 306686) (35.4%), G6 (PI 537598) (35.4%) and G14 (PI 560169) (35.3%). Oil contents varied between 29.1-36.5%. Yield-trait relationships were assessed through both correlation analysis and GT (Genotype by Trait) biplot analysis. Based on the results of the two approaches, plant height (PH), number of branches (NB), number of heads (NH) and thousand-seed weight (TSW) were identified as the most significant selection criteria for yield from safflower. The combined use of correlation and biplot analysis in the assessment of relationships among the traits improved the chance for success.

Ocurrence of rotavirus and picobirnavirus in wild and exotic avian from amazon forest

The present study reports the occurrence of rotavirus A (RVA), rotavirus D (RVD), rotavirus F (RVF), rotavirus G (RVG), and picobirnavirus (PBV) in fecal specimens of wild (n = 22), and exotic birds (n = 1) from different cities of Pará state. These animals were hospitalized at Veterinary Hospital of the Federal University of Pará, Brazil, in a period from January 2018 to June 2019. The animals exhibited different clinical signs, such as diarrhea, malnutrition, dehydration, and fractures. The results showed 39.1% (9/23) of positivity for RVA by RT-qPCR. Among these, one sample (1/9) for the NSP3 gene of T2 genotype was characterized. About 88.9% (8/9) for the VP7 gene belonging to G1, G3 equine like and G6 genotypes, and 55.5% (5/9) for the VP4 gene of P[2] genotype were obtained. In the current study, approximately 4.5% of the samples (1/23) revealed coinfection for the RVA, RVD and RVF groups. Furthermore, picobirnavirus (PBV) was detected in one of the 23 samples tested, and was classified in the Genogroup I. The findings represent the first report of RVA, RVD, RVF, RVG, and PBV genotypes in wild birds in Brazil, and due to wide distribution it can implies potential impacts of RVs, and PBVs on avian health, and other animals contributing to construction of new knowledge, and care perspectives.

GGE biplot analysis of promising barley lines in the cold regions of Iran

ABSTRACT In multi-environment trials (METs), the study of genotype × environment (GE) interaction is important for identifying high-yielding and stable or specifically adapted genotypes. The main objective of this study was to evaluate the GE interaction via GGE biplot analysis using some promising barley (Hordeum vulgare L.) lines evaluated in an MET to identify genotypes possessing high yield and yield stability in the cold regions of Iran. Eighteen promising barley lines, along with two check cultivars, were evaluated during two consecutive cropping seasons (2016–17 and 2017–18) at six research stations located in different regions of the cold zone. The results demonstrated that G1, G2, G4, and G8 were among those with high-yield and stable performance across environments. Moreover, GGE biplot analysis identified these genotypes along with G19 and G20 as the most ideal genotypes. Of these, G8 and G20 showed the highest yield performance. Genotype G15 (Germunk3) was specifically adapted for some regions such as Hamadan province. On the other hand, genotype G8 (Makouee/Jolgeh) had general adaptability across different environments and can be recommended as a new barley genotype for cultivation in most cold regions of Iran.

Genetic diversity in the Tams1 gene of Theileria annulata (Duschunkowsky and Luhs, 1904) infecting cattle

The present study describes the genetic diversity in the Tams1 gene (733 bp) of Theileria annulata along with the sequence, phylogenetic and haplotype analyses of the Indian isolates. The phylogenetic analyses displayed distinct clustering of the Indian isolates into three groups suggesting the presence of three genotypes, hitherto designated as T. annulata genotypes 1–3 (G1-G3). Genotype 3 seems to be novel containing only two newly generated sequences. Indian isolates displayed 88.4–100% and 82.2–100% similarity with each other at nucleotide (nt) and amino acid (aa) levels, respectively. However, the newly generated sequences (n = 36) showed 90.5–100% and 84.3–100% identity between them at nt and aa levels, respectively. The most diverse and heterogeneous genotype, G1, exhibited the highest number of polymorphic sites (S = 148), haplotypes (h = 16) and nucleotide differences (k = 43.23) besides haplotype (Hd = 0.903 ± 0.031) and nucleotide (π = 0.059 ± 0.005) diversities. Neutrality indices suggested a respective decrease and increase in population sizes of G1 and G2 genotypes in India. The nucleotide sequence analyses indicated the presence of extensive sequence variations between nucleotide positions 1-124, 194–257 and 396–494. The N‐terminus of Tams1 protein displayed a considerable sequence variability with extensive variations in two regions, between amino acid positions 1–39 and 127–172, as compared to the conserved carboxyl terminus.

Agricultural characteristic performance of local and exotic okra (Abelmoschus esculentus L. Moench) genotypes in Bangladesh

PurposeTwenty genotypes of okra including hybrids and open pollinated varieties both from local and exotic sources were evaluated in the field to study their yield performance and disease response.Research methodExperiment was conducted following randomized complete block design with three replications.FindingsAnalysis of variance indicates significant variation among the okra cultivars for all the characters’ studied except days to first germination. The highest number of fruits per plant (19.98) and maximum yield of green fruits per plant (279.59 g) and maximum yield (1.33 kg/m2) was obtained in the genotype G4 (F1-hybrid) followed by G7 and G18. The maximum edible fruit length was observed in G7 followed by G19 and G15. The maximum number of seeds perfruit was recorded in G4.The highest 100-seed weight was found in G4 followed by G17. On the contrary, the lowest seeds per fruit, 100-seed weight, and green fruit yield per plant were obtained from G6. The highest incidence of yellow vein mosaic virus (YVMV) was observed in the genotype G6 and the lowest in the genotype G19 followed by G8, G2, G4, G17 andG12. The cluster analysis grouped 20 genotypes into five cluster and maximum number of genotypes included in cluster 5. Strong positive correlation was observed between yield per plant and days to 50% germination, germination percentage, number of seeds per fruits and 100-seed weight (g).Limitations: No significant limitation to the report.Originality/Value: The results help to identify the suitable okra genotypes and generate breeding materials.

1319Epidemiology and Risk Factors for Viral Hepatitis C in Oran

Abstract Introduction The clinical epidemiological profile of patients with viral hepatitis C appears to differ from population. It is well established that in the West, the two main modes of hepatitis C virus contamination are blood transfusion and addiction. However, in our region, risk factors for transmission remain poorly identified and poorly quantified Thus, the objective of this study is to chart the epidemiological profile and to show the share of the different risk factors reported among the modes of transmission of HCV in this category of Oranese patients. Methods A cross-sectional study was conducted with patients with chronic viral hepatitis C, admitted to the gastroenterology services of the Oran University Hospital and prospectively collected from 2009 until 2015 for therapeutic management. The data were collected using a standardized questionnaire and processed on SPSS 20.0. Results There are 289 cases of viral hepatitis C; female predominance (sex ratio of 0.56). Their average age is 48.9±12.9 years. The G1 genotype is slightly with a frequency of 48.4% followed by the G2 with 37.7%. Among the probable modes of contamination reported, dental care ranked first with 54.7% followed by surgical procedures in 26.3%. Traditional practices such as hijama and scarification were found in 51.9% of cases. Conclusion Apart from the known contamination factors in the literature, we must not overlook the very important part of traditional practices that are closely linked to the traditions and beliefs of our region. Awareness campaigns should be adopted on hygiene practices to ensure good care safety. Keywords HCV, Contamination Patterns, Genotype, Risk