Model For Membrane Fusion Research Articles

Imaging Regulatory Lipids and Protein Kinase C at Sites of Exocytosis

The control of exocytosis is physiologically essential. In vitro SNARE proteins are sufficient to drive model membrane fusion, but in cells there are over twenty additional proteins and lipids that work together to drive efficient, fast, and timely release of vesicular cargo. Many of these important accessory proteins are controlled via phosphorylation, and protein kinase C (PKC) has previously been linked to the modulation of exocytosis. We use total internal reflection fluorescence microscopy to observe the spatiotemporal dynamics of dozens of proteins and lipids relative to single sites of exocytosis in living endocrine INS-1 cells. INS-1 cells are a model system for insulin secretion. We use a vesicle cargo marker NPY-GFP to identify where exocytosis occurs and tag proteins-of-interest with a red fluorescent protein. Lipid species are visualized using lipid sensors: fluorescent proteins fused to protein domains with known specificity for single lipids. After stimulating exocytosis using ionomycin, we observe a transient accumulation of PIP2- and DAG-sensors at exocytic sites centered on the time of membrane fusion and only lasting a few seconds. Intriguingly, we observe a concomitant recruitment of conventional PKC isoforms with kinetics broadly similar to PIP2 and DAG. Novel and atypical PKCs do not appear to be recruited. PIP2, DAG, and PKC recruitment only occur at sites of exocytosis and not at control docked-vesicles nearby to sites of exocytosis. PKC is known to target several critical exocytic proteins, including munc18 and dynamin-1, and we are currently investigating whether these targets are phosphorylated in response to the recruitment of PKC that we observe. These data suggest that a regulatory lipid cascade may recruit and activate PKC to sites of exocytosis to regulate membrane fusion or cargo release.

Direct observation of intermediate states in model membrane fusion.

We introduce a novel assay for membrane fusion of solid supported membranes on silica beads and on coverslips. Fusion of the lipid bilayers is induced by bringing an optically trapped bead in contact with the coverslip surface while observing the bead’s thermal motion with microsecond temporal and nanometer spatial resolution using a three-dimensional position detector. The probability of fusion is controlled by the membrane tension on the particle. We show that the progression of fusion can be monitored by changes in the three-dimensional position histograms of the bead and in its rate of diffusion. We were able to observe all fusion intermediates including transient fusion, formation of a stalk, hemifusion and the completion of a fusion pore. Fusion intermediates are characterized by axial but not lateral confinement of the motion of the bead and independently by the change of its rate of diffusion due to the additional drag from the stalk-like connection between the two membranes. The detailed information provided by this assay makes it ideally suited for studies of early events in pure lipid bilayer fusion or fusion assisted by fusogenic molecules.

Model of membrane fusion: Continuous transition to fusion pore with regard of hydrophobic and hydration interactions

We consider the process of fusion of lipid membranes from the stage of stalk with minimal radius to the stage of fusion pore. We assume that stalk directly developed into the fusion pore, omitting the stage of hemifusion diaphragm. Energy of intermediate stages is calculated on the basis of the classical elasticity theory of liquid crystals adapted for lipid membranes. The trajectory of transition from stalk to pore is obtained with regard to hydrophobic and hydration interactions. Continuous change of orientation of lipids in distal monolayers occurs along the trajectory. The orientation changes from the direction along rotational axis of the system specific to stalk to the direction corresponding to the fusion pore. Dependence of energy of intermediate stages on the value of spontaneous curvature of distal monolayers of the fusing membranes is obtained. We demonstrate that the energy barrier of the stalk-to-pore transition decreases when distal monolayers have positive spontaneous curvature, which is in accordance with available experimental data.

ENV7andYCK3, which encode vacuolar membrane protein kinases, genetically interact to impact cell fitness and vacuole morphology

Saccharomyces cerevisiae vacuoles serve as a model for membrane fusion and fission. Yck3, a vacuolar membrane kinase, has been implicated in regulation of vacuole fusion. Recently, we established Env7 as another vacuolar membrane protein kinase with similar but nonredundant function to Yck3. Here, we report that native Env7 localizes to the vacuole independent of Yck3, where as its phosphorylation is YCK3 dependent. We also show that env7Δyck3Δ double mutant exhibits severely compromised fitness, altered cell size and bud vacuoles, and F-class vacuolar morphology. Our results establish negative genetic interactions between ENV7 and YCK3 and suggest cooperative roles for the two conserved genes in regulation of membrane dynamics. Such genetic buffering supports a critical role for membrane flux in global cell fitness.

Activation Thermodynamics of Poly(Ethylene Glycol)-Mediated Model Membrane Fusion Support Mechanistic Models of Stalk and Pore Formation

Membrane fusion, essential to eukaryotic life, is broadly envisioned as a three-step process proceeding from contacting bilayers through two semistable, nonlamellar lipidic intermediate states to a fusion pore. Here, we introduced a new, to our knowledge, experimental approach to gain insight into the nature of the transition states between initial, intermediate, and final states. Recorded time courses of lipid-mixing, content-mixing, and content-leakage associated with fusion of 23 nm vesicles in the presence of poly(ethylene glycol) at multiple temperatures were fitted globally to a three-step sequential model to yield rate constants and thereby activation thermodynamics for each step of the process, as well as probabilities of occurrence of lipid-mixing, content-mixing, or content-leakage in each state. Experiments with membranes containing hexadecane, known to reduce interstice energy in nonlamellar structures, provided additional insight into the nature of fusion intermediates and transition states. The results support a hypothesis for the mechanism of stalk formation (step-1) that involves acyl chain protrusions into the interbilayer contact region, a hypothesis for a step-2 mechanism involving continuous interconversion of semistable nonlamellar intermediates, and a hypothesis for step-3 (pore formation) mechanism involving correlated movement of whole lipid molecules into hydrophobic spaces created by geometry mismatch between intermediate structures.

Activation Thermodynamics of Poly(Ethylene Glycol)-Mediated Model Membrane Fusion Support Mechanistic Models of Stalk and Pore Formation

Activation Thermodynamics of Poly(Ethylene Glycol)-Mediated Model Membrane Fusion Support Mechanistic Models of Stalk and Pore Formation

Comparative structural analysis of retroviral fusion proteins identifies regions that modulate membrane fusion: a potential retroviral achilles heal?

Refolding of viral class-1 membrane fusion proteins from a native state to a trimer-of-hairpins structure promotes entry of viruses into cells. Here we present the structure of the bovine leukaemia virus transmembrane glycoprotein (TM) and identify a group of asparagine residues at the membrane-distal end of the trimer of hairpins that is strikingly conserved among divergent viruses. These asparagines are not essential for surface display of pre-fusogenic envelope. Instead, substitution of these residues dramatically disrupts membrane fusion. Our data indicate that through electrostatic interactions with of a chloride ion the asparagine residues promote assembly and profoundly stabilize the fusion-active structures that are required for viral envelope-mediated membrane fusion. Moreover, the BLV TM structure also reveals a charge-surrounded hydrophobic pocket on the central coiled coil and interactions with basic residues that cluster around this pocket are critical to membrane fusion and form a target for peptide inhibitors of envelope function. Charge-surrounded pockets and electrostatic interactions with small ions are common leitmotifs among class-1 fusion proteins. We will discuss the impact of these observations in light of current models of membrane fusion and as potential targets for therapeutic inhibition of viral entry.

Role of Anionic Lipids on Peg-Mediated Model Membrane Fusion

Poly(ethylene glycol)- (PEG) mediated fusion of 25 nm vesicles composed of dioleoylphosphatidylcholine (DOPC), dioleoylphosphatidylethanolamine (DOPE), bovine brain sphingomyelin (SM), cholesterol (CH) and phosphatidylserine (PS) was examined in order to investigate the effects of phosphatidylserine (PS) on the fusion mechanism. Lipid mixing (LM), content mixing (CM) and content leakage (L) measurements were carried out with vesicles containing from 0 to 10 mol% PS and similar amounts of phosphatidylglycerol (PG) as controls. Fitting these time courses globally to a 3-state (aggregate, intermediate, pore) sequential model established the rate constants for each step as well as probabilities for the occurrence of LM, CM, or L in each state. Charged lipids inhibited rates of intermediate and pore formation, with inhibition of intermediate formation being directly proportional to negative surface potential for PG but greater for PS. Inhibition of pore formation was limited up to 4% PG or PS but increased dramatically above that. Even low PG content inhibited the rapid rate of PEG-induced aggregation (detected by turbidity) and led to smaller aggregates (detected by DLS), while a slower component of turbidity increase roughly tracked the dependence on PG content of the rate of pore formation. PS or PG content above 6% also inhibited lipid mixing in the initial intermediate. We conclude that, aside from an expected effect on the rate and extent of PEG-induced aggregation, PS at physiological membrane contents alters the nature of the initial intermediate such that lipid mixing between joined monolayers is considerably reduced prior to formation of a stable fusion pore. Supported by NIH grant GM32707 to BRL.

Spatial Regulation of Membrane Fusion Controlled by Modification of Phosphoinositides

Membrane fusion plays a central role in many cell processes from vesicular transport to nuclear envelope reconstitution at mitosis but the mechanisms that underlie fusion of natural membranes are not well understood. Studies with synthetic membranes and theoretical considerations indicate that accumulation of lipids characterised by negative curvature such as diacylglycerol (DAG) facilitate fusion. However, the specific role of lipids in membrane fusion of natural membranes is not well established. Nuclear envelope (NE) assembly was used as a model for membrane fusion. A natural membrane population highly enriched in the enzyme and substrate needed to produce DAG has been isolated and is required for fusions leading to nuclear envelope formation, although it contributes only a small amount of the membrane eventually incorporated into the NE. It was postulated to initiate and regulate membrane fusion. Here we use a multidisciplinary approach including subcellular membrane purification, fluorescence spectroscopy and Förster resonance energy transfer (FRET)/two-photon fluorescence lifetime imaging microscopy (FLIM) to demonstrate that initiation of vesicle fusion arises from two unique sites where these vesicles bind to chromatin. Fusion is subsequently propagated to the endoplasmic reticulum-derived membranes that make up the bulk of the NE to ultimately enclose the chromatin. We show how initiation of multiple vesicle fusions can be controlled by localised production of DAG and propagated bidirectionally. Phospholipase C (PLCγ), GTP hydrolysis and (phosphatidylinsositol-(4,5)-bisphosphate (PtdIns(4,5)P2) are required for the latter process. We discuss the general implications of membrane fusion regulation and spatial control utilising such a mechanism.

Synthetic Fusion Peptides of Tick-Borne Encephalitis Virus as Models for Membrane Fusion

The fusion peptide of TBEV is a short segment of the envelope protein that mediates viral and host cell membrane fusion at acidic pH. Previous studies on the E protein have shown that mutations at L107 have an effect on fusogenic activity. Structural studies have also suggested that during the fusion process the E protein rearranges to form a trimer. In the present study, a number of short peptides were synthesized, and their structure/activity was examined: (1) monomers consisting of residues 93-113 of the wild-type E protein with Leu at position 107 (WT) and two mutants, namely, L107F and L107T; (2) a monomer consisting of residues 93-113 of the E protein with a C105A mutation (TFPmn); (3) a trimer consisting of three monomers described in (2), linked at the C-terminus via 1 Lys (TFPtr); (4) a monomer consisting of residues 93-113 of the E protein plus six additional Lys at the C-terminus; and (5) a trimer consisting of three monomers described in (3), linked via the side chain of the sixth lysine. The secondary structure content of all peptides was investigated using circular dichroism (CD). Approximately seven of the residues were in beta-strand conformation, in the presence of POPC/POPE/cholesterol. The structures did not depend on pH significantly. The fusogenicity of the peptides was measured by FRET and photon correlation spectroscopy. The data suggest that TFPtr is the most fusogenic at acidic pH and that the mutation from L107 to T reduces activity. Molecular dynamics simulations of WT, L107T, and L107F suggest that this reduction in activity may be related to the fact that the mutations disrupt trimer stability. Finally, tryptophan fluorescence experiments were used to localize the peptides in the membrane. It was found that WT, L107F, TFPmn, and TFPtr could penetrate better into the acyl chain region of the lipids than the other peptides tested. The implications of these results on the fusion mechanism of TBEV E protein will be presented.

PEG as a tool to gain insight into membrane fusion

Thirty years ago, Klaus Arnold and others showed that the action of PEG in promoting cell-cell fusion was not due to such effects as surface absorption, cross-linking, solubilization, etc. Instead PEG acted simply by volume exclusion, resulting in an osmotic force driving membranes into close contact in a dehydrated region. This simple observation, based on a number of physical measurements and the use of PEG-based detergents that insert into membranes, spawned several important areas of research. One such area is the use of PEG to bring membranes into contact so that the role of different lipids and fusion proteins in membrane fusion can be examined in detail. We have summarized here insights into the fusion mechanism that have been obtained by this approach. This evidence indicates that fusion of model membranes (and probably cell membranes) occurs via severely bent lipidic structures formed at the point of sufficiently close contact between membranes of appropriate lipid composition. This line of research has also suggested that fusion proteins seem to catalyze fusion in part by reducing the free energy of hydrophobic interstices inherent to the lipidic fusion intermediate structures.

Trans-SNARE pairing can precede a hemifusion intermediate in intracellular membrane fusion

The question concerning whether all membranes fuse according to the same mechanism has yet to be answered satisfactorily. During fusion of model membranes or viruses, membranes dock, the outer membrane leaflets mix (termed hemifusion), and finally the fusion pore opens and the contents mix. Viral fusion proteins consist of a membrane-disturbing 'fusion peptide' and a helical bundle that pin the membranes together. Although SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) complexes form helical bundles with similar topology, it is unknown whether SNARE-dependent fusion events on intracellular membranes proceed through a hemifusion state. Here we identify the first hemifusion state for SNARE-dependent fusion of native membranes, and place it into a sequence of molecular events: formation of helical bundles by SNAREs precedes hemifusion; further progression to pore opening requires additional peptides. Thus, SNARE-dependent fusion may proceed along the same pathway as viral fusion: both use a docking mechanism via helical bundles and additional peptides to destabilize the membrane and efficiently induce lipid mixing. Our results suggest that a common lipidic intermediate may underlie all fusion reactions of lipid bilayers.

Uncoupling of Photoreceptor Peripherin/rds Fusogenic Activity from Biosynthesis, Subunit Assembly, and Targeting: A POTENTIAL MECHANISM FOR PATHOGENIC EFFECTS

Inherited defects in the RDS gene cause a multiplicity of progressive retinal diseases in humans. The gene product, peripherin/rds (P/rds), is a member of the tetraspanin protein family required for normal vertebrate photoreceptor outer segment (OS) architecture. Although its molecular function remains uncertain, P/rds has been suggested to catalyze membrane fusion events required for the OS renewal process. This study investigates the importance of two charged residues within a predicted C-terminal helical region for protein biosynthesis, localization, and interaction with model membranes. Targeted mutagenesis was utilized to neutralize charges at Glu(321) and Lys(324) individually and in combination to generate three mutant variants. Studies were conducted on variants expressed as 1) full-length P/rds in COS-1 cells, 2) glutathione S-transferase fusion proteins in Escherichia coli, and 3) membrane-associated green fluorescent protein fusion proteins in transgenic Xenopus laevis. None of the mutations affected biosynthesis of full-length P/rds in COS-1 cells as assessed by Western blotting, sedimentation velocity, and immunofluorescence microscopy. Although all mutations reside within a recently identified localization signal, none altered the ability of this region to direct OS targeting in transgenic X. laevis retinas. In contrast, individual or simultaneous neutralization of the charged amino acids Glu(321) and Lys(324) abolished the ability of the C-terminal domain to promote model membrane fusion as assayed by lipid mixing. These results demonstrate that, although overlapping, C-terminal determinants responsible for OS targeting and fusogenicity are separable and that fusogenic activity has been uncoupled from other protein properties. The observation that subunit assembly and OS targeting can both proceed normally in the absence of fusogenic activity suggests that properly assembled and targeted yet functionally altered proteins could potentially generate pathogenic effects within the vertebrate photoreceptor.

A New Mechanism of Model Membrane Fusion Determined from Monte Carlo Simulation

We have carried out extensive Monte Carlo simulations of the fusion of tense apposed bilayers formed by amphiphilic molecules within the framework of a coarse-grained lattice model. The fusion pathway differs from the usual stalk mechanism. Stalks do form between the apposed bilayers, but rather than expand radially to form an axial-symmetric hemifusion diaphragm of the trans leaves of both bilayers, they promote in their vicinity the nucleation of small holes in the bilayers. Two subsequent paths are observed. 1), The stalk encircles a hole in one bilayer creating a diaphragm comprised of both leaves of the other intact bilayer, which ruptures to complete the fusion pore. 2), Before the stalk can encircle a hole in one bilayer, a second hole forms in the other bilayer, and the stalk aligns and encircles them both to complete the fusion pore. Both pathways give rise to mixing between the cis and trans leaves of the bilayer and allow for transient leakage.

A soluble peripherin/Rds C-terminal polypeptide promotes membrane fusion and changes conformation upon membrane association

Photoreceptor rod cells contain a unique tetraspanin fusion protein known as peripherin/rds. This protein is important in membrane fusion events hypothesized to be essential to disk membrane morphogenesis and disk shedding. In vivo and in vitro fusogenic activity has been mapped to the C-terminal domain of peripherin/rds. Moreover, a fusion peptide domain localized to a 15 amino acid long region (residues 311–325) is essential for mediating lipid bilayer fusion of model membranes. To address the functional and structural properties required for peripherin/rds dependent membrane fusion, constructs of the entire C-terminal domain (residues 284–346) were generated and polypeptides expressed. A wild type-peripherin/rds C-terminal GST fusion construct that included the entire C-terminus (PERCTER) or a C-terminal truncation mutant (PERCTN) were engineered with a thrombin cleavage site. Protein expression was induced in E. coli with IPTG, expressed proteins cleaved from the GST with thrombin and purified to homogeneity on a Superdex 75 column. Purity was confirmed by SDS–PAGE and Western blot analysis. The purified wt C-terminal protein resolved as a monomer under reducing conditions on SDS–PAGE (15%) and was immunoreactive with anti peripherin/rds antibody 2B6 (gift from Dr R. Molday). The purified polypeptide promoted the requisite steps of fusion, membrane destabilization, lipid mixing and aqueous contents mixing. Conversely, the truncation mutant lacking a portion of the fusion domain was unable to promote these steps. A common feature of most membrane fusion proteins is a change in conformation upon membrane association. Structural changes in the C-terminal polypeptide were investigated using far UV CD. The far UV CD spectra of the purified C-terminal polypeptide indicated substantial α-helical content in the wt peptide in isotonic aqueous buffer. An increase in intensity of 208 and 222 nm CD bands upon addition of DPC vesicles indicated an increase in α-helical content of the polypeptide. These results demonstrate that a purified soluble form of the C-terminus of peripherin/rds can interact with biological phospholipids; moreover, this interaction promotes a conformational change that is most consistent with an increase in α-helical content.

Coarse‐grained models and collective phenomena in membranes: Computer simulation of membrane fusion

AbstractWe discuss the role coarse‐grained models play in investigating collective phenomena in bilayer membranes and place them in the context of alternative approaches. By reducing the degrees of freedom and applying simple effective potentials, coarse‐grained models can address the large time scales and length scales of collective phenomena in membranes. Although the mapping from a coarse‐grained model onto chemically realistic models is a challenge, such models provide a direct view on the phenomena that occur on the length scales of a few tens of nanometers. Their relevance is exemplified by the study of fusion of model membranes. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 1441–1450, 2003

Pyrene cholesterol reports the transient appearance of nonlamellar intermediate structures during fusion of model membranes.

We have hypothesized that modulating the free energy of hydrophobic mismatch (HM) might be a principal means to control the fusion process and that it may be a role of cholesterol to counteract HM and make membranes fusogenic. To test these hypotheses, we examined the ability of cholesterol 1-pyrenebutyrate (PY-Ch) and other pyrene-containing fluorescent probes to report interstices formed during the L(alpha)-H(II) transition of DiPoPE in terms of changes in excimer/monomer (E/M) fluorescence ratios. We found a significant (>150%) increase in the PY-Ch E/M in the hexagonal phase relative to the lamellar phase, presumably resulting from redistribution of PY-Ch from the curved lamellar leaflets to coexisting HMs that constitute 20 vol % of this phase. All other probes showed a much smaller or even an opposite (PY-hexadecanoic acid) effect. The time course of the PY-Ch E/M ratio during fusion of DOPC/PE/Ch small unilamellar vesicles showed a transient increase with a subsequent decrease, consistent with fusion proceeding through intermediates with significant HM. The amplitude and position of the maximum in E/M correlated with the rate of contents mixing. An increase in E/M was not seen when lipid mixing occurred in the absence of contents mixing. Our results suggest that PY-Ch provides a tool for monitoring fusion intermediates that occur after the initial fusion intermediate but prior to pore formation, possibly by accumulating in regions associated with HM.

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Secretory and viral fusion may share mechanistic events with fusion between curved lipid bilayers.

Activation energies for the individual steps of secretory and viral fusion are reported to be large [Oberhauser, A. F., Monck, J. R. & Fernandez, J. M. (1992) Biophys. J. 61, 800-809; Clague, M. J., Schoch, C., Zech, L. & Blumenthal, R. (1990) Biochemistry 29, 1303-1308]. Understanding the cause for these large activation energies is crucial to defining the mechanisms of these two types of biological membrane fusion. We showed recently that the fusion of protein-free model lipid bilayers mimics the sequence of steps observed during secretory and viral fusion, suggesting that these processes may involve common lipid, rather than protein, rearrangements. To test for this possibility, we determined the activation energies for the three steps that we were able to distinguish as contributing to the fusion of protein-free model lipid bilayers. Activation energies for lipid rearrangements associated with formation of the reversible first intermediate, with conversion of this to a semi-stable second intermediate, and with irreversible fusion pore formation were 37 kcal/mol, 27 kcal/mol, and 22 kcal/mol, respectively. The first and last of these were comparable to the activation energies observed for membrane lipid exchange (42 kcal/mol) during viral fusion and for the rate of fusion pore opening during secretory granule release (23 kcal/mol). This striking similarity suggests strongly that the basic molecular processes involved in secretory and viral fusion involve a set of lipid molecule rearrangements that also are involved in model membrane fusion.

Fusion between retinal rod outer segment membranes and model membranes: a role for photoreceptor peripherin/rds.

Peripherin/rds plays an essential role in the maintenance of photoreceptor rod cell disk membrane structure. The purification of this protein to homogeneity [Boesze-Battaglia, K., et al. (1997) Biochemistry 36, 6835-6846] has allowed us to characterize the functional role of peripherin/rds in the maintenance of rod outer segment (ROS) membrane fusion processes. Utilizing a cell-free fusion assay system, we report that the fusion of R18-labeled ROS plasma membrane (R18-PM) with disk membranes or peripherin/rds-enriched large unilammellar vesicles (LUVs) is inhibited upon trypsinolysis of peripherin/rds. To understand this phenomenon, we tested the ability of a series of overlapping synthetic C-terminal peripherin/rds peptides to mediate model membrane fusion. Within the 63 amino acid long region of the C-terminus, we identified a minimal 15 residue long amino acid sequence (PP-5), which is necessary to promote membrane fusion. PP-5 was able to inhibit R18-PM disk membrane fusion and promoted ANTS/DPX contents mixing in a pure vesicle system. This peptide (PP-5) promoted calcium-induced vesicle aggregation of phosphatidylethanolamine:phosphatidylserine LUVs. FTIR analysis confirmed the structural prediction of this peptide as alpha-helical. When modeled as an alpha-helix, this peptide is amphiphilic with a hydrophobicity index of 0.75 and a hydrophobic moment of 0.59. PP-5 has substantial biochemical and functional homology with other well-characterized membrane fusion proteins. These results demonstrate the necessity for peripherin/rds in ROS membrane fusion, specifically the requirement for an intact C-terminal region of this protein.