Root Endophytic Fungi Research Articles

Biological management of rhizome rot in ginger (Zingiber officinale ) plants and stored ginger seeds

Two endospore-forming endophytic bacteria (EEB1 A8 and EEB2 B13) were isolated from ginger rhizome collected from the fields of College of Agriculture, Vellayani and identified as Bacillus spp. Their antagonistic potential against Pythium myriotylum , the soft rot pathogen of ginger, was analyzed in vitro by dual culture plate assay and the agar well diffusion method. They tested positive for biocontrol traits such as the production of hydrogen cyanide, siderophore and volatile organic compounds. The bacterial isolates were applied to ginger plants to test biocontrol efficiency against P. myriotylum , individually and in combination with Piriformospora indica , a fungal root endophyte capable of promoting plant growth and enhancing plant defense. A lesser percent disease index (PDI) was observed in plants where the combination of EEB1 A8 and P. indica was applied. The activity of enzymes pertinent to protective mechanisms against pathogens, like peroxidase, phenylalanine ammonia-lyase, super oxide dismutase (SOD) and polyphenol oxidase (PPO) in the plants were analyzed before challenging, 1st, 3rd and 5th day after challenging with pathogen. The values followed the same trend in all treatments as it increased after inoculation up to 3rd day and then decreased for peroxidase (PO) and SOD. The plants treated with EEB1 A8 and combination of EEB1 A8 and P. indica showed the highest values for the level of defense enzyme production. In a storage study, when ginger seed rhizomes were treated with individual bacterial isolates and as a consortium of both, followed by inoculation with the pathogen P. myriotylum , rhizomes treated with consortium were more tolerant to rhizome rot. Applying endospore-forming bacteria with biocontrol properties is a propitious method for controlling rhizome rot in ginger, in the field and during seed storage.

The transgenic A. thaliana of the gene PIIN_00131 from the root endophytic fungus Serendipita indica shows early flowering

The transgenic A. thaliana of the gene PIIN_00131 from the root endophytic fungus Serendipita indica shows early flowering

Bacterial and fungal root endophytes alter survival, growth, and resistance to grazing in a foundation plant species.

Plants host an array of microbial symbionts, including both bacterial and fungal endophytes located within their roots. While bacterial and fungal endophytes independently alter host plant growth, response to stress and susceptibility to disease, their combined effects on host plants are poorly studied. To tease apart interactions between co-occurring endophytes on plant growth, morphology, physiology, and survival we conducted a greenhouse experiment. Different genotypes of Spartina alterniflora, a foundational salt marsh species, were inoculated with one bacterial endophyte, Kosakonia oryzae, one fungal endophyte, Magnaporthales sp., or co-inoculated. Within the greenhouse, an unplanned herbivory event occurred which allowed insight into the ways bacteria, fungi, and co-inoculation of both endophytic microbes alters plant defense chemicals and changes herbivory. Broadly, the individual inoculation of the bacterial endophyte increased survival, whereas the fungal endophyte increased plant growth traits. Following the herbivory event, the proportion of stems grazed was reduced when plants were inoculated with the individual endophytes and further reduced when both endophytes were present. Across genotypes, anti-herbivore defense chemicals varied by individual and co-inoculation of endophytes. Bacterial inoculation and genotype interactively affected above:below-ground biomass and S. alterniflora survival of ungrazed plants. Overall, our results highlight the variable outcomes of endophyte inoculation on Spartina growth, morphology, phenolics, and survival. This study furthers our understanding of the combined effects of symbionts and plant multitrophic interactions. Further, exploring intra and inter specific effects of plant--microbe symbiosis may be key in better predicting ecosystem level outcomes, particularly in response to global change.

Macaw palm is a harbor of new non-grass species of dark septate endophytes belonging to the genus Pseudophialophora (Magnaporthaceae).

Macaw palm (Acrocomia aculeata) is an oleaginous crop native to Brazil with significant economic and environmental value. It has been explored commercially in Brazil within sustainable management. The microbiota associated with macaw palm is still little known and there is no report about their root's fungal endophytes. Recently, the community of dark septate endophytes (DSE) from macaw palm began to be investigated, and new taxa were found. The present study aimed to describe two new Pseudophialophora species associated with macaw palm roots. The isolation method performed was the dilution-to-extinction cultivation. ITS, RPB1, tef1-α, LSU, and SSU regions were amplified and sequenced for phylogenetic analyses. The isolates formed two phylogenetically independent lineages and we proposed the new species P. chlamydospora and P. endophytica. For the first time, new taxa of DSE fungi were described from macaw palm.

Mycorrhizal and endophytic fungi structure forest below-ground symbiosis through contrasting but interdependent assembly processes

BackgroundInteractions between plants and diverse root-associated fungi are essential drivers of forest ecosystem dynamics. The symbiosis is potentially dependent on multiple ecological factors/processes such as host/symbiont specificity, background soil microbiome, inter-root dispersal of symbionts, and fungus–fungus interactions within roots. Nonetheless, it has remained a major challenge to reveal the mechanisms by which those multiple factors/processes determine the assembly of root-associated fungal communities. Based on the framework of joint species distribution modeling, we examined 1,615 root-tips samples collected in a cool-temperate forest to reveal how root-associated fungal community structure was collectively formed through filtering by host plants, associations with background soil fungi, spatial autocorrelation, and symbiont–symbiont interactions. In addition, to detect fungi that drive the assembly of the entire root-associated fungal community, we inferred networks of direct fungus–fungus associations by a statistical modeling that could account for implicit environmental effects.ResultsThe fine-scale community structure of root-associated fungi were best explained by the statistical model including the four ecological factors/processes. Meanwhile, among partial models, those including background soil fungal community structure and within-root fungus–fungus interactions showed the highest performance. When fine-root distributions were examined, ectomycorrhizal fungi tended to show stronger associations with background soil community structure and spatially autocorrelated patterns than other fungal guilds. In contrast, the distributions of root-endophytic fungi were inferred to depend greatly on fungus–fungus interactions. An additional statistical analysis further suggested that some endophytic fungi, such as Phialocephala and Leptodontidium, were placed at the core positions within the web of direct associations with other root-associated fungi.ConclusionBy applying emerging statistical frameworks to intensive datasets of root-associated fungal communities, we demonstrated background soil fungal community structure and fungus–fungus associations within roots, as well as filtering by host plants and spatial autocorrelation in ecological processes, could collectively drive the assembly of root-associated fungi. We also found that basic assembly rules could differ between mycorrhizal and endophytic fungi, both of which were major components of forest ecosystems. Consequently, knowledge of how multiple ecological factors/processes differentially drive the assembly of multiple fungal guilds is indispensable for comprehensively understanding the mechanisms by which terrestrial ecosystem dynamics are organized by plant–fungal symbiosis.

Fungal endophyte symbionts enhance plant adaptation in Antarctic habitats.

Despite their genetic adaptation to local conditions, plants often achieve ecological success through symbiotic associations with fungal endophytes. However, the habitat-specific functionality of these interactions and their potential to drive plant adaptation to new environments remain uncertain. In this study, we tested this using the vascular flora of the Antarctic tundra (Colobanthus quitensis and Deschampsia antarctica), an extreme environment where fungal endophytes are known for playing important ecological roles. After characterizing the root-associated fungal endophyte communities of both species in two distinct Antarctic terrestrial habitats-hill and coast-we experimentally assessed the contribution of fungal endophytes to plant adaptation in each habitat. The field reciprocal transplant experiment involved removing endophytes from a set of plants and crossing symbiotic status (with and without endophytes) with habitat for both species, aiming to assess plant performance and fitness. The diversity of root fungal endophytes was similar between habitats and mainly explained by plant species, although habitat-specific endophyte community structures were identified in D. antarctica. Endophytes significantly influenced C. quitensis homeostatic regulation, including oxidative stress and osmotic control, as well as plant fitness in both environments. By contrast, the effect of endophytes on D. antarctica was particularly evident in coastal sites, suggesting an endophyte-mediated improvement in local adaptation. Altogether, our results suggest that the two Antarctic vascular plant species follow different strategies in recruiting and developing functional symbiosis with root-associated fungal communities. While C. quitensis is more generalist, D. antarctica establishes specific interactions with habitat-specific microbial symbionts, predominantly in the most stressful environmental context.

Environmental Factors Drive the Biogeographic Pattern of Hippophae rhamnoides Root Endophytic Fungal Diversity in the Arid Regions of Northwest China.

Hippophae rhamnoides subsp. sinensis Rousi (Abbrev. H. rhamnoides) stands as a vital botanical asset in ameliorating the ecological landscape of the arid regions in Northwest China, where its rhizospheric microorganisms serve as linchpins in its growth and developmental dynamics. This study aimed to explore the community structure characteristics and origin differences of root endophytic fungi in H. rhamnoides. Samples were collected from 25 areas where H. rhamnoides is naturally distributed along an altitude gradient in the northwest region. Then, endophytic fungi from different regions were analyzed by using high-throughput sequencing technology to compare the structural characteristics of endophytic fungi and examine their association with environmental factors. FUNGuild was employed to analyze the community structure and functions of endophytic fungi, and the results showed that each region had its own dominant endophytic fungal flora, demonstrating the differences in origin of endophytic fungi, and the specific endophytic flora acquired from the original soil in the growing season of H. rhamnoides will help us construct the microecological community structure. Furthermore, the study identified and assessed the diversity of fungi, elucidating the species structure and highlighting dominant species. The RDA analysis revealed that available phosphorus (AP), available potassium (AK), and total nitrogen (TN) exhibit significant correlations with the composition and diversity of root-associated fungi. In conclusion, the fungal community structure is similar within the same region, while significant differences exist in the taxonomic structure and biodiversity among different regions. These findings shed light on the intricate interplay and mechanisms governing the ecological restoration of H. rhamnoides, offering a valuable framework for advancing green ecology initiatives and harnessing the potential of root-associated microorganisms in this species.

Diversity of Root Endophytic Fungi from Some Medicinal Plants of Papaveraceae in Iran

Diversity of Root Endophytic Fungi from Some Medicinal Plants of Papaveraceae in Iran

Soil fungi lead to stronger ‘diminishing returns’ in fine‐root length versus mass allometry towards earlier successional tropical forests

Abstract Decreasing returns in resource acquisition ability with increasing leaf mass investment is called ‘diminishing returns’, which provides important insights into plant economy. Yet, whether this is true for fine roots and how root resource acquisition strategies change with forest succession remain unclear. We investigated the scaling relationship between fine‐root length (L) and mass (M) for 215 topsoil cores from 24 plots across four successional stages in tropical forests of Xishuangbanna, southwestern China. We also assessed the relative effects of edaphic conditions, leaf functional traits, tree species diversity and soil fungal factors on L versus M scaling relationship using hierarchical variation partitioning. Our results revealed the existence of diminishing returns in root length (L vs. M scaling exponent <1), and that the exponent was higher in late‐ than early‐successional forests, corresponding to a strategy shifting from ‘do‐it‐yourself’ in the late‐successional stage to ‘outsourcing’ resource uptake by soil fungi in the early‐successional stage. Soil fungal abundance was the main driver of changes in the L versus M scaling exponent across plots (explained 58% of variances), with root endophytic fungi the strongest predictor (22.11%), followed by mycorrhizal fungi (10.41%), while other factors (leaf functional traits, edaphic nutrient conditions and tree species diversity) exerted weak effects. Our results suggest that root endophytic and mycorrhizal fungi act as key modulators of root economy changes during forest succession, but the former has received less attention previously. L versus M scaling exponent may be a better indicator for shifts in root resource acquisition strategy than the commonly used specific root length. Read the free Plain Language Summary for this article on the Journal blog.

A fungal endophyte increases plant resilience to low nutrient availabilities: a case of Fe acquisition in legumes.

Microbial inocula are considered a promising and effective alternative solution to the use of chemical fertilizers to support plant growth and productivity since they play a key role in the availability and uptake of nutrients. Here, the effect of a beneficial of a fungal root endophyte, Fusarium solani strain K (FsK), on nutrient acquisition efficiency of the legume Lotus japonicus was studied, and putative mode-of-action of the endophyte at a molecular level was determined. Plant colonization with the endophyte resulted in increased shoot and root fresh weight under Fe deficiency compared to control nutrient conditions. Plant inoculation with FsK was associated with a significant increase in macro- and micronutrient concentration in leaves at an early stage of endophyte inoculation and a replenishment of Fe content under prolonged iron starvation. The mechanistic basis of the plant growth promotion capabilities of the endophyte is exerted at the transcriptional level since we recorded changes in the expression levels of genes related to iron uptake in FsK-colonized plants under stress conditions compared to uninoculated plants. In addition, the observed changes in the ethylene biosynthesis-related genes suggest a possible implication of ethylene in the mode of action used by FsK to enhance plant response to nutrient stress conditions. Finally, we demonstrated that the endophyte possesses a reductive high-affinity Fe uptake system and identified a ferric reductase that was induced in planta under Fe deficiency conditions, indicating that this fungal Fe homeostasis mechanism may result in a benefit in nutrient acquisition for the plant as well.

Cultivable root endophytic fungi associated with Acrocomia aculeata and its antagonistic activity against phytopathogenic oomycetes.

Macaw palm (Acrocomia aculeata Jacq.) is a palm, native to Brazilian territory that stands out due to the amount of oil produced with applications in the biodiesel industry, cosmetics, and food. Its commercial exploitation in Brazil, including phytosanitary management is based on concepts and practices of regenerative agriculture, which has the responsibility of sustainable cultivation by avoiding, for example, the use of chemical pesticides. Recently, root and stem rot disease were reported in macaw palm seedlings caused by Phytophthora palmivora. Managing this plant pathogen is complex, and the chemical control of this soil-borne oomycete is not viable, in addition to the negative impact on the environment. Many microorganisms are studied and used as biological control agents (BCAs) against pathogens, among them the community of endophytic fungi associated with plants. This is a sustainable biotechnological alternative for plant disease control. The community of cultivable endophytic fungi associated with healthy roots of macaw palm was explored using the extinction cultivation technique and a screening was carried out to select potential antagonists against oomycetes through the dual culture test. Specific gene regions from the best isolates were amplified for identification. A total of 250 isolates were obtained, and 46 were selected for in vitro tests against representatives of phytopathogenic oomycetes. After tests against Phytophthora heterospora, Phytophthora palmivora, Pythium aphanidermatum, and Pythium deliense, two isolates were selected as potential antagonists. The phylogenetic analysis of selected isolates showed that they belong to two different species: Talaromyces sayulitensis COAD 3605 and Epicoccum italicum COAD 3608. The percentage of inhibition of phytopathogenic oomycetes testedwas until 82% in the antagonism tests conducted. From the 46 isolates selected, only 2 were selected which showed great antagonistic activity towards all oomycetes tested. These fungi will be used in upcoming studies that aim to determine the effectiveness of endophytes in controlling diseases caused by oomycetes in the field.

Nitrogen removal performance and mechanism in constructed wetlands under saline conditions: Role of Canna indica inoculated with Piriformospora indica

The phytopromotional root endophytic fungus Piriformospora indica was introduced into the wetland plant Canna indica L. to explore its impact on nitrogen (N) removal in constructed wetlands (CWs) to treat normal and saline (0.9 % NaCl) wastewater. P. indica colonization increased total nitrogen, NH4+-N, and NO3–-N removal efficiencies under normal and saline conditions, with NO3–-N removal rates significantly increasing by 17.5 % under saline conditions (P<0.05). N removal by plant uptake improved by 26.1 % and 27.7 % under normal and saline conditions due to P. indica-mediated growth-promoting effects. Salt-tolerant denitrifiers and nitrifiers guaranteed the dominant role of microbial degradation in N removal under saline conditions. P. indica inoculation considerably improved the contribution of Nocardioides and Nitrosomnas to dissimilatory/assimilatory nitrate reduction and nitrification genes, respectively. These findings elucidate the mechanisms and potential applications of P. indica-mediated phytoremediation in practical wastewater treatment under varying salty conditions.

Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungus Piriformospora indica.

Salinity is a significant threat that causes considerable yield losses in date palm. The root endophytic fungus Piriformospora indica has proven effective in providing salt stress tolerance to host plants. However, the underlying molecular mechanism facilitating the date palm's response to P. indica inoculation, and its involvement in the salt stress tolerance, remains unknown. In this study, the colonization of P. indica on date palm seedlings exposed to saline conditions was observed through confocal microscopy, and its impact on gene expressions was evaluated using the transcriptomic analysis. Our findings show that P. indica colonization reinforced the cortical cells, prevented them from plasmolysis and cell death under salinity. The RNAseq analysis produced clean reads ranging from 62,040,451 to 3,652,095 across the treatment groups, successfully assembling into 30,600 annotated genes. Out of them, the number of differentially expressed genes (DEGs) varied across the treatments: i.e., 2523, 2031, and 1936 DEGs were upregulated, while 2323, 959, and 3546 were downregulated in Salt, Fungi, and Fungi+Salt groups, respectively. Furthermore, principal component analysis based on transcriptome profiles revealed discrete clustering of samples from different treatment groups. KEGG and GO pathways enrichment analysis highlighted variation in the number and types of enriched pathways among the treatments. Our study indicated variations in gene expression related to plant hormone biosynthesis and signal transduction (auxin, abscisic acid, gibberellin, and ethylene), ABC transporters, sodium/hydrogen exchanger, cation HKT transporter, transcription factors such as WRKY and MYBs, and the plant immune system (lipoxygenase and jasmonate) of the date palm seedlings. By characterizing the transcriptome of date palm roots under salt stress and with colonization of P. indica, the present findings provide valuable perspectives on the molecular mechanisms responsible for inducing salinity stress tolerance in plants.

A symbiont fungal effector relocalizes a plastidic oxidoreductase to nuclei to induce resistance to pathogens and salt stress

The root endophytic fungus Serendipita indica establishes beneficial symbioses with a broad spectrum of plants and enhances host resilience against biotic and abiotic stresses. However, little is known about the mechanisms underlying S.indica-mediated plant protection. Here, we report S.indica effector (SIE) 141 and its host target CDSP32, a conserved thioredoxin-like protein, and underlying mechanisms for enhancing pathogen resistance and abiotic salt tolerance in Arabidopsis thaliana. SIE141 binding interfered with canonical targeting of CDSP32 to chloroplasts, leading to its re-location into the plant nucleus. This nuclear translocation is essential for both their interaction and resistance function. Furthermore, SIE141 enhanced oxidoreductase activity of CDSP32, leading to CDSP32-mediated monomerization and activation of NON-EXPRESSOR OF PATHOGENESIS-RELATED 1 (NPR1), a key regulator of systemic resistance. Our findings provide functional insights on how S.indica transfers well-known beneficial effects to host plants and indicate CDSP32 as a genetic resource to improve plant resilience to abiotic and biotic stresses.

Assessing the biodiversity of rhizosphere and endophytic fungi in Knoxia valerianoides under continuous cropping conditions

BackgroundRhizosphere and endophytic fungi play important roles in plant health and crop productivity. However, their community dynamics during the continuous cropping of Knoxia valerianoides have rarely been reported. K. valerianoides is a perennial herb of the family Rubiaceae and has been used in herbal medicines for ages. Here, we used high-throughput sequencing technology Illumina MiSeq to study the structural and functional dynamics of the rhizosphere and endophytic fungi of K. valerianoides.ResultsThe findings indicate that continuous planting has led to an increase in the richness and diversity of rhizosphere fungi, while concomitantly resulting in a decrease in the richness and diversity of root fungi. The diversity of endophytic fungal communities in roots was lower than that of the rhizosphere fungi. Ascomycota and Basidiomycota were the dominant phyla detected during the continuous cropping of K. valerianoides. In addition, we found that root rot directly affected the structure and diversity of fungal communities in the rhizosphere and the roots of K. valerianoides. Consequently, both the rhizosphere and endophyte fungal communities of root rot-infected plants showed higher richness than the healthy plants. The relative abundance of Fusarium in two and three years old root rot-infected plants was significantly higher than the control, indicating that continuous planting negatively affected the health of K. valerianoides plants. Decision Curve Analysis showed that soil pH, organic matter (OM), available K, total K, soil sucrase (S_SC), soil catalase (S_CAT), and soil cellulase (S_CL) were significantly related (p < 0.05) to the fungal community dynamics.ConclusionsThe diversity of fungal species in the rhizosphere and root of K. valerianoides was reported for the first time. The fungal diversity of rhizosphere soil was higher than that of root endophytic fungi. The fungal diversity of root rot plants was higher than that of healthy plants. Soil pH, OM, available K, total K, S_CAT, S_SC, and S_CL were significantly related to the fungal diversity. The occurrence of root rot had an effect on the community structure and diversity of rhizosphere and root endophytic fungi.

Assessment of root colonization, identification, and phosphate solubilization activity of root endophytic fungi obtained from hybrid tomato Lycopersicon esculentum Mill. var. TNAU CO3

Assessment of root colonization, identification, and phosphate solubilization activity of root endophytic fungi obtained from hybrid tomato Lycopersicon esculentum Mill. var. TNAU CO3

Colonization of root endophytic fungus Serendipita indica improves drought tolerance of Pinus taeda seedlings by regulating metabolome and proteome.

Pinus taeda is an important forest tree species for plantations because of its rapid growth and high yield of oleoresins. Although P. taeda plantations distribute in warm and wet southern China, drought, sometime serious and long time, often occurs in the region. To explore drought tolerance of P. taeda and usage of beneficial microorganisms, P. taeda seedlings were planted in pots and were inoculated with root endophytic fungus Serendipita indica and finally were treated with drought stress for 53 d. Metabolome and proteome of their needles were analyzed. The results showed that S. indica inoculation of P. taeda seedlings under drought stress caused great changes in levels of some metabolites in their needles, especially some flavonoids and organic acids. Among them, the levels of eriocitrin, trans-aconitic acid, vitamin C, uric acid, alpha-ketoglutaric acid, vitamin A, stachydrine, coumalic acid, itaconic acid, calceolarioside B, 2-oxoglutaric acid, and citric acid were upregulated more than three times in inoculated seedlings under drought stress, compared to those of non-inoculated seedlings under drought stress. KEGG analysis showed that some pathways were enriched in inoculated seedlings under drought stress, such as flavonoid biosynthesis, ascorbate and aldarate metabolism, C5-branched dibasic acid metabolism. Proteome analysis revealed some specific differential proteins. Two proteins, namely, H9X056 and H9VDW5, only appeared in the needles of inoculated seedlings under drought stress. The protein H9VNE7 was upregulated more than 11.0 times as that of non-inoculated seedlings under drought stress. In addition, S. indica inoculation increased enrichment of water deficient-inducible proteins (such as LP3-1, LP3-2, LP3-3, and dehydrins) and those involved in ribosomal structures (such as A0A385JF23). Meanwhile, under drought stress, the inoculation caused great changes in biosynthesis and metabolism pathways, mainly including phenylpropanoid biosynthesis, cutin, suberine and wax biosynthesis, and 2-oxocarboxylic acid metabolism. In addition, there were positive relationships between accumulation of some metabolites and enrichment of proteins in P. taeda under drought stress. Altogether, our results showed great changes in metabolome and proteome in inoculated seedlings under drought stress and provided a guideline to further study functions of metabolites and proteins, especially those related to drought stress.

Mycochemical composition and antioxidant activity of root endophytic aquatic hyphomycetes isolated from the riparian area of Kumaun Himalaya, India

Endophytic fungi are essential sources of various bioactive natural compounds. The present study is aimed to investigate the chemical composition and antioxidant compounds of the root endophytic aquatic hyphomycetous fungi Tetracladium setigerum isolated from the roots of Barberries aristata growing in the riparian area of Nainital, Kumaun Himalaya. The chemical profiling was done by GC-MS analysis. The presence of 32 compounds characterised the fungal extract. 1, 2-Benzenedicarboxylic acid, diethyl ester; Bis(2-ethylhexyl) phthalate; and Bicyclo [3.2.1]octan-4-on-1-carbonsaeure,6-(6,10dimethyl-1,5,9-undecatrien-2-yl)-8-methyl-, ethyl ester were reported as major compounds in the ethyl acetate extract of T. setigerum. The antioxidant capacity of the extract was assessed by DPPH, MCA, and FRAP assay. In antioxidant analysis, the ethyl acetate extract of T. setigerum presents IC50, 42.34 µg/ml, and 46.90 µg/ml using DPPH and MCA, respectively. The tested extract also showed effective antioxidant activity 436.71 ± 9.3 mg AAE/g of the dry extract using FRAP assay.

Characteristics of root endophytic fungi communities associated with genetically modified plants

Root endophytic fungi (EF) spend at least parts of their life cycle inside plant tissues without apparent harm to the host. There is a hypothesis that the endophytic lifestyle is a common strategy for most fungi and they have endophytic ancestors [1]. By receiving habitat and nutrients EF can increase the solubility of nutrients in the plant rhizosphere, stimulate plant growth, and activate the plant’s systemic resistance to stress. One of the alternatives to the use of pesticides is the use of resistant transgenic plants, but the potential effects of crop modifications on their associated microorganisms are poorly studied.&#x0D; The EF communities of transgenic lines of cotton, sugar cane, and maize containing the expressed Cry1 protein from Bacillus thuringiensis were compared with communities of non-transgenic plants. There were no significant differences in the composition of the EF community [2, 3]. The introduction of phosphinothricin-N-acetyltransferase and imazapyr herbicide resistance genes for corn and sugar cane also did not affect on EF communities but did affect the bacterial community [3, 4]. The similar effect was observed for transgenic maple plants [5]. The stage of plant development had a more significant effect on EF community than the fact of transformation itself [1].&#x0D; We believe that the fungal community is more conservative and the introduction of herbicide resistance or toxin synthesis genes into the plant genome has a significantly lesser effect on EF community than on the bacterial one.

Cultivar-specific dynamics: unravelling rhizosphere microbiome responses to water deficit stress in potato cultivars

BackgroundGrowing evidence suggests that soil microbes can improve plant fitness under drought. However, in potato, the world’s most important non-cereal crop, the role of the rhizosphere microbiome under drought has been poorly studied. Using a cultivation independent metabarcoding approach, we examined the rhizosphere microbiome of two potato cultivars with different drought tolerance as a function of water regime (continuous versus reduced watering) and manipulation of soil microbial diversity (i.e., natural (NSM), vs. disturbed (DSM) soil microbiome).ResultsWater regime and soil pre-treatment showed a significant interaction with bacterial community composition of the sensitive (HERBST) but not the resistant cultivar (MONI). Overall, MONI had a moderate response to the treatments and its rhizosphere selected Rhizobiales under reduced watering in NSM soil, whereas Bradyrhizobium, Ammoniphilus, Symbiobacterium and unclassified Hydrogenedensaceae in DSM soil. In contrast, HERBST response to the treatments was more pronounced. Notably, in NSM soil treated with reduced watering, the root endophytic fungus Falciphora and many Actinobacteriota members (Streptomyces, Glycomyces, Marmoricola, Aeromicrobium, Mycobacterium and others) were largely represented. However, DSM soil treatment resulted in no fungal taxa and fewer enrichment of these Actinobacteriota under reduced watering. Moreover, the number of bacterial core amplicon sequence variants (core ASVs) was more consistent in MONI regardless of soil pre-treatment and water regimes as opposed to HERBST, in which a marked reduction of core ASVs was observed in DSM soil.ConclusionsBesides the influence of soil conditions, our results indicate a strong cultivar-dependent relationship between the rhizosphere microbiome of potato cultivars and their capacity to respond to perturbations such as reduced soil moisture. Our study highlights the importance of integrating soil conditions and plant genetic variability as key factors in future breeding programs aiming to develop drought resistance in a major food crop like potato. Elucidating the molecular mechanisms how plants recruit microbes from soil which help to mitigate plant stress and to identify key microbial taxa, which harbour the respective traits might therefore be an important topic for future research.