Diversity Of Fungal Endophytes Research Articles

Diversity of Foliar Endophytic Fungi in Artocarpus heterophyllus Lam. and Citrus reticulata Blanco of Tripura

Present investigation dealt with the isolation and diversity of foliar fungal endophytes from two fruit yielding plants of Tripura state. Seasonal distributions of endophytes in respect to fruiting and non-fruiting season in two host plants were also studied. Twenty one fungal strains along with one nonsporulating hyaline form were isolated as foliar endophytes from the two host plants. In both fruiting and non-fruiting seasons, from Citrus reticulata seven foliar endophytic fungi were isolated. Whereas from Artocarpus heterophyllus in both the season eleven fungal endophytes with one nonsporulating hyaline form were isolated. The relative frequencies of isolated fungi from both A. heterophyllus and C. reticulata in fruiting and non-fruiting season significantly differed among the sampling sites, whereas relative frequencies individual endophytic fungus showed no significant differences among various sampling sites.

Diversity and antibacterial activity of fungal endophytes from Eucalyptus exserta

BackgroundEucalyptus bacterial wilt caused by Ralstonia solanacearum is an important eucalyptus disease. Endophytic fungi, an important source of natural active substances, provide a new breakthrough for the control of plant diseases.ResultsIn the present study, 80 endophytic fungal isolates were obtained from the healthy branches and fruits of Eucalyptus exserta. Fifteen distinct isolates (MK120854-MK120868) were selected for further taxonomic identification through morphological trait assessments and internal transcribed spacer (ITS) region-rRNA gene sequence analysis. Thirteen genera, namely, Phyllosticta, Penicillium, Eutypella, Purpureocillium, Talaromyces, Lophiostoma, Cladosporium, Pestalotiopsis, Chaetomium, Fusarium, Gongronella, Scedosporium and Pseudallescheria, were identified on the basis of their morphological characteristics. Members of the genus Phyllosticta were the primary isolates, with a colonization frequency (CF) of 27.5 %. Most of the fungal isolates displayed antibacterial activity. The crude extracts obtained from Lophiostoma sp. Eef-7, Pestalotiopsis sp. Eef-9 and Chaetomium sp. Eef-10 exhibited strong inhibition on the test bacteria, and Lophiostoma sp. Eef-7 was further cultured on a large scale. Three known compounds, scorpinone (1), 5-deoxybostrycoidin (2) and 4-methyl-5,6-dihydro-2 H-pyran-2-one (3), were isolated from the endophytic fungus Lophiostoma sp. Eef-7 associated with E. exserta. The structures of these compounds were elucidated by analysis of 1D and 2D NMR and HR-ESI-MS spectra and a comparison of their spectral data with published values. Compounds 1 and 2 showed weak antimicrobial activity against Ralstonia solanacearum.ConclusionsEndophytic fungi from Eucalyptus exserta may represent alternative sources of antimicrobial agents. Lophiostoma sp. Eef-7 can produce 2-azaanthraquinone derivatives and shows weak antibacterial activity against Ralstonia solanacearum.

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives.

Seed banks were first established to conserve crop genetic diversity, but seed banking has more recently been extended to wild plants, particularly crop wild relatives (CWRs) (e.g., by the Millennium Seed Bank (MSB), Royal Botanic Gardens Kew). CWRs have been recognised as potential reservoirs of beneficial traits for our domesticated crops, and with mounting evidence of the importance of the microbiome to organismal health, it follows that the microbial communities of wild relatives could also be a valuable resource for crop resilience to environmental and pathogenic threats. Endophytic fungi reside asymptomatically inside all plant tissues and have been found to confer advantages to their plant host. Preserving the natural microbial diversity of plants could therefore represent an important secondary conservation role of seed banks. At the same time, species that are reported as endophytes may also be latent pathogens. We explored the potential of the MSB as an incidental fungal endophyte bank by assessing diversity of fungi inside stored seeds. Using banana CWRs in the genus Musa as a case-study, we sequenced an extended ITS-LSU fragment in order to delimit operational taxonomic units (OTUs) and used a similarity and phylogenetics approach for classification. Fungi were successfully detected inside just under one third of the seeds, with a few genera accounting for most of the OTUs–primarily Lasiodiplodia, Fusarium, and Aspergillus–while a large variety of rare OTUs from across the Ascomycota were isolated only once. Fusarium species were notably abundant–of significance in light of Fusarium wilt, a disease threatening global banana crops–and so were targeted for additional sequencing with the marker EF1α in order to delimit species and place them in a phylogeny of the genus. Endophyte community composition, diversity and abundance was significantly different across habitats, and we explored the relationship between community differences and seed germination/viability. Our results show that there is a previously neglected invisible fungal dimension to seed banking that could well have implications for the seed collection and storage procedures, and that collections such as the MSB are indeed a novel source of potentially useful fungal strains.

Diversity and Communities of Fungal Endophytes from Four Pinus Species in Korea

Fungal endophytes are ubiquitous in nature. They are known as potential sources of natural products, and possible agents for biocontrol attributing to their ability to produce a repertoire of bioactive compounds. In this study, we isolated fungal endophytes from three different tissues (needle, stem and root) of four Pinus species (Pinus densiflora, Pinus koraiensis, Pnus rigida, and Pinus thunbergii) across 18 sampling sites in Korea. A total number of 5872 culturable fungal endophytes were isolated using standard culturing techniques. Molecular identification based on the sequence analyses of the internal transcribed spacer (ITS) or 28S ribosomal DNA revealed a total of 234 different fungal species. The isolated fungal endophytes belonged to Ascomycota (91.06%), Basidiomycota (5.95%) and Mucoromycota (2.97%), with 144 operational taxonomic units (OTUs) and 88 different genera. In all sampling sites, the highest species richness (S) was observed in site 1T (51 OTUs) while the lowest was observed in site 4T (27 OTUs). In terms of diversity, as measured by Shannon diversity index (H’), the sampling site 2D (H′ = 3.216) showed the highest while the lowest H’ was observed in site 2K (H’ = 2.232). Species richness (S) in three different tissues revealed that root and needle tissues are highly colonized with fungal endophytes compared to stem tissue. No significant difference was observed in the diversity of endophytes in three different tissues. Among the four Pinus species, P. thunbergii exhibited the highest species richness and diversity of fungal endophytes. Our findings also revealed that the environmental factors have no significant impact in shaping the composition of the fungal endophytes. Furthermore, FUNGuild analysis revealed three major classifications of fungal endophytes based on trophic modes namely saprotrophs, symbiotrophs, and pathotrophs in four Pinus species, with high proportions of saprotrophs and pathothrops.

Diversity and Spatiotemporal Distribution of Fungal Endophytes Associated with Salvia multicaulis.

Salvia multicaulis has been an important medicinal plant in Iran and several East Asian countries for hundreds of years. Because of growing demand, overharvesting of wild S. multicaulis has endangered its wild populations. Endophytes are well known for protecting wild plant populations against biotic and abiotic stresses, especially under harsh situations, as well as for their plant growth enhancement activities. Since no information was on endophyte biology in S. multicaulis, here we aimed at analyzing diversity and spatiotemporal distribution of fungal endophytes associating S. multicaulis in their main wild habitats in Iran, i.e., Qazvin, Alborz and Mazandaran provinces. A total of 153 fungal endophytes were isolated and identified according to their morphology and ribosomal ITS rDNA sequences. As results indicated Ascomycota dominated in colonizing S. multicaulis with a relative frequency (RF) of 96.77%, comprising of Eurotiomycetes (RF: 40.5%), Sordariomycetes (RF: 33.9%) and Dothideomycetes (RF: 20.5%). Mucoromycota, comprised the rest of endophytes (RF: 5.23%). The entire fungal microbiome was classified into nine genera including Fusarium (25.5%), Penicillium (21.5%), Aspergillus (17.0%), Alternaria (15.5%), Colletotrichum (5.2%), Rhizopus (5.2%), Macrophomina (4.5%), Trichoderma (3.25%) and Nodulisporium (2.0%). Analyses of different diversity indices indicated significant correlations with tissue type, sampling locations and season of recovery. Almost 43% of fungal endophytes were recovered at Mazandaran, Kojur; 35.4% at Qazvin, Barajin Forest Park; 30.1% at Alborz, Taleqan; and 21% at Alborz, Mahdasht. The highest overall endophyte recovery was in summer (36.8%), followed by spring (31.6%), autumn (21%), and winter (10.5%). In total, the number of endophytes recovered from roots (91) was higher than those of stems (32) and leaves (30), especially during autumn and winter. Accordingly, we conclude that Ascomycota are the major endophytic fungi colonizing S. multicaulis, and that sampling location, tissue type and season can affect the fungal endophyte composition of this medicinal plant. This knowledge could be further applied in protection and health management of this endangered species.

Diversity and Plant Growth Promotion of Fungal Endophytes in Five Halophytes from the Buan Salt Marsh.

The diversity and plant growth-promoting ability of fungal endophytes that are associated with five halophytic plant species (Phragmites australis, Suaeda australis, Limonium tetragonum, Suaeda glauca Bunge, and Suaeda maritima) growing in the Buan salt marsh on the west coast of South Korea have been explored. About 188 fungal strains were isolated from these plant samples' roots and were then studied with the use of the internal transcribed spacer (ITS) region (ITS1-5.8S-ITS2). The endophytic fungal strains belonged to 33 genera. Alternaria (18%) and Fusarium (12.8%), of the classes Dothideomycetes and Sordariomycetes, were most rampant in the coastal salt marsh plants. There was a higher diversity in fungal endophytes that are isolated from S. glauca Bunge than in isolates from other coastal salt marsh plants. Plant growth-promoting experiments with the use of Waito-C rice seedlings show that some of the fungal strains could encourage a more efficient growth than others. Furthermore, gibberellins (GAs) GA1, GA3, and GA9 were seen in the Sa-1-4-3 isolate (Acrostalagmus luteoalbus) culture filtrate with a gas chromatography/mass spectrometry.

Endophytic fungal diversity of endemic carnivorous plant Nepenthes khasiana in Meghalaya, India

The present investigation deals with the isolation of endophytic fungi from leaf, stem, root and pitcher cup tissue segments of the endemic carnivorous plant Nepenthes khaisana collected from its natural habitat for a period of one year at monthly intervals. Out of 576 tissue segments inoculated, a total of 39 fungal endophytes along with mycelia sterilia were isolated from the host plant. To assess the diversity of fungal endophytes, the colonization frequency (%CF) was first recorded using past software and MS excel. The fungal isolates were mainly composed of the phylum Ascomycota, followed by Zygomycota and Oomycota. The highest percentage colonization frequency on an average of three replicates were recorded in pitcher cup tissues followed by root, stem and least was recorded in leaf of the host plant. Among the isolates, Globisporangium irregulare (83.33%) showed high % CF in leaf, Juxtiphoma eupyrena (83.33%) reported to have maximum % CF in the stem, Talaromyces ruber (66.66%) was recorded high % CF in root and mycelia sterilia (white) were showed the highest % CF in the segments of leaf. The diversity index analyses of Shannon-Weiner, Simpson*s index, species richness and species evenness of diversity showed that leaf of N. Khasiana has the highest diversity than the other parts of the plant. So, with the help of the present finding, we conclude that the distribution of fungal endophytes and their % colonization frequencies vary within different tissues of the host plant and thus, this confirms tissue specificity nature of endophytic fungi.

High-Throughput Metabarcoding Characterizes Fungal Endophyte Diversity in the Phyllosphere of a Barley Crop

Over the last decade, the microbiome has received increasing attention as a key factor in macroorganism fitness. Sustainable pest management requires an understanding of the complex microbial endophyte communities existing symbiotically within plants and the way synthetic pesticides interact with them. Fungal endophytes are known to benefit plant growth and fitness and may deter pests and diseases. Recent advances in high-throughput sequencing (HTS) have enabled integrative microbiome studies, especially in agricultural contexts. Here, we profile the fungal endophyte community in the phyllosphere of two barley (Hordeum vulgare) cultivars exposed to two systemic foliar fungicides using metabarcoding, an HTS tool that constructs community profiles from environmental DNA. We studied the fungal nuclear ribosomal large subunit D2 and internal transcribed spacer 2 (ITS2) DNA markers through a bioinformatics pipeline introduced here. We found 88 and 128 unique amplicon sequence variants (ASVs) using the D2 and ITS2 metabarcoding assays, respectively. With principal coordinate analysis and permutational analysis of variance, ASV diversity did not change in response to barley cultivar or fungicide treatment; however, the community structure of unsprayed plants did change between two collection times 8 days apart. The workflow described here can be applied to other microbiome studies in agriculture and we hope it encourages further research into crop microbiomes to improve agroecosystem management.

Root-associated community composition and co-occurrence patterns of fungi in wild grapevine

Crops’ wild relatives host a wide range of microorganisms, including some beneficial species that are not found or are under-represented in the domesticated crops. Our goal was to study the underexplored composition of root-associated fungal communities in endangered wild grapevines. We found high taxonomic diversity representing multiple trophic guilds that include beneficial symbiotrophs and endophytes. Soil factors explain a relatively small part of their overall variability. In contrast, the majority of the associated fungal taxa shows a close fit to the neutral model for prediction of their distributions. Only beneficial arbuscular mycorrhizal fungi and the pathogenic Ilyonectria depart from the neutral distribution model and form intimate interactions with the plant host. In addition, pathogenic fungi rarely occurred in samples that included ectomycorrhizal fungi, which suggested potentially applicable inter-microorganism interactions. High abundance and diversity of fungal endophytes on the wild grapevine roots highlight the need for their careful consideration in future studies. • Wild grapevine roots host high diversity of fungi from multiple trophic guilds. • Root-associated fungi fit mainly into neutral model for distribution prediction. • Arbuscular mycorrhizal fungi and Ilyonectria most intimately relate to the host. • Pathogenic fungi rarely occurred in samples that included ectomycorrhizal fung.

Plant diversity and litter accumulation mediate the loss of foliar endophyte fungal richness following nutrient addition.

Foliar fungal endophytes are ubiquitous plant symbionts that can affect plant growth and reproduction via their roles in pathogen and stress tolerance, as well as plant hormonal signaling. Despite their importance, we have a limited understanding of how foliar fungal endophytes respond to varying environmental conditions such as nutrient inputs. The responses of foliar fungal endophyte communities to increased nutrient deposition may be mediated by the simultaneous effects on within-host competition as well as the indirect impacts of altered host population size, plant productivity, and plant community diversity and composition. Here, we leveraged a 7-yr experiment manipulating nitrogen, phosphorus, potassium, and micronutrients to investigate how nutrient-induced changes to plant diversity, plant productivity, and plant community composition relate to changes in foliar fungal endophyte diversity and richness in a focal native grass host, Andropogon gerardii. We found limited evidence of direct effects of nutrients on endophyte diversity. Instead, the effects of nutrients on endophyte diversity appeared to be mediated by accumulation of plant litter and plant diversity loss. Specifically, nitrogen addition is associated with a 40% decrease in plant diversity and an 11% decrease in endophyte richness. Although nitrogen, phosphorus, and potassium addition increased aboveground live biomass and decreased relative Andropogon cover, endophyte diversity did not covary with live plant biomass or Andropogon cover. Our results suggest that fungal endophyte diversity within this focal host is determined in part by the diversity of the surrounding plant community and its potential impact on immigrant propagules and dispersal dynamics. Our results suggest that elemental nutrients reduce endophyte diversity indirectly via impacts on the local plant community, not direct response to nutrient addition. Thus, the effects of global change drivers, such as nutrient deposition, on characteristics of host populations and the diversity of their local communities are important for predicting the response of symbiont communities in a changing global environment.

Endophytes from Panax species

Medicinal plants from the genus Panax has long been traditionally used to treat various diseases and therefore constitute very important resources for endophytes bioprospecting. Over the past decade (2007–2019) investigations have been conducted to analyse the microbial community inhabiting several species of this genus. We comprehensively summarized in this review available data regarding the diversity and biological activity of microbial species living inside Panax species without causing harm. Our investigation into literature revealed that although the number of studies is limited, an astonishing diversity of bacterial and fungal endophytes inhabiting Panax ginseng Meyer and Panax notoginseng (Burkill) F.H.Chen has already been uncovered. We also found that some of these endophytes can produce some major plant metabolites and also convert some of these major metabolites into minor or new compounds. This study also demonstrated that so far, more than 347 bacteria and 21 fungi have been identified with biocontrol abilities against pathogens of the root-rot disease complex in Panax species. Moreover, the phytochemical investigation of a very limited number of endophytes led to the characterization of more than 80 secondary metabolites, exhibiting antimicrobial, antioxidant, antiacetylcholinesterase, anti-inflammatory, and anticancer activities. We hope that this review provides the scientific community with useful information regarding the diversity and bioactive potential of endophytes of the Panax genus and motivate scientists to investigate other species of this genus.

Diversity, community composition, and bioactivity of cultivable fungal endophytes in saline and dry soils in deserts

Fungal endophyte communities are poorly investigated in extreme habitats such as deserts. We used cultivation and Sanger sequencing to investigate the effects of environmental variables on the endophytic fungal communities of eight Iranian desert plants. Host species was the main factor shaping the endophyte composition, while soil type additionally affected endophytes of above- and below-ground organs. Redundancy analysis showed that soil pH and electric conductivity determine fungal endophyte communities in plants in dry and saline soils. In a follow-up experiment, we showed that these endophytes could be used in crop production under salinity/drought stress and as biocontrol agents. Although compared to other ecosystems, the endophytic fungi associated with the studied Iranian desert plants are of low diversity, our results suggest that they probably play an essential role in the survival of their hosts. Further investigation is necessary to evaluate the potential benefits and applicability of such endophytes in agricultural practices in drylands. • Host species is the most important factor shaping the endophytic communities. • Soil type and properties affect the below- and above-ground fungal communities. • In the dry soils, pHe mostly affect endophytic fungal communities. • In the saline soils, EC and ECe mostly affect endophytic fungal communities. • Extreme-habitat-adapted endophytes confer abiotic stress tolerance to non host plant.

Sphaeropsis sapinea and fungal endophyte diversity in twigs of Scots pine (Pinus sylvestris) in Germany

Sphaeropsis sapinea is the causal fungal agent of Diplodia tip blight disease of Scots pine (Pinus sylvestris) and other coniferous trees of relevance to forestry in Germany. In this study, the distribution and occurrence of S. sapinea and accompanying endophytic fungi in twigs of healthy and diseased Scots pine was investigated on a spatial and temporal scale. Sampling of 26,000 twig segments from trees in 105 temperate coniferous forest stands in Germany resulted in isolation of 33,000 endophytic fungi consisting of 103 species identified based on morphological and ITS-DNA sequence analyses. Approximately 98% of the sample was represented by fungi in the Ascomycota, with only two species (Peniophora pini and Coprinellus sp.) belonging to the Basidiomycota. Four species were detected in a frequency greater than 10% (Sphaeropsis sapinea, Sydowia polyspora, Microsphaeropsis olivacea, and Truncatella conorum-piceae) from the collective sample. A typical inhabitant of Scots pine twigs Desmazierella acicola was isolated and additionally typical hardwood colonizers like Biscogniauxia spp. were detected. S. sapinea, an endophytic plant pathogen with saprobic capabilities, was isolated from more than 80% of the studied pine trees, but the majority of trees sampled showed no symptoms of Diplodia tip blight. No invasive, pathogenic quarantine fungi for Germany were isolated from healthy or diseased Scots pines. Advantages and disadvantages of isolation-based endophyte studies over studies using direct DNA-isolation are discussed. Knowledge of the fungal endophyte communities in twigs of Scots pine allowed for identification S. sapinea and other potential pathogens of pines and other forest trees that may possibly contribute to increased disease under repeated periods of drought and heat stress in the future.

Diversity and Plant Growth-Promoting Effects of Fungal Endophytes Isolated from Salt-Tolerant Plants.

Fungal endophytes are symbiotic microorganisms that are often found in asymptomatic plants. This study describes the genetic diversity of the fungal endophytes isolated from the roots of plants sampled from the west coast of Korea. Five halophytic plant species, Limonium tetragonum, Suaeda australis, Suaeda maritima, Suaeda glauca Bunge, and Phragmites australis, were collected from a salt marsh in Gochang and used to isolate and identify culturable, root-associated endophytic fungi. The fungal internal transcribed spacer (ITS) region ITS1-5.8S-ITS2 was used as the DNA barcode for the classification of these specimens. In total, 156 isolates of the fungal strains were identified and categorized into 23 genera and two phyla (Ascomycota and Basidiomycota), with Dothideomycetes and Sordariomycetes as the predominant classes. The genus Alternaria accounted for the largest number of strains, followed by Cladosporium and Fusarium. The highest diversity index was obtained from the endophytic fungal group associated with the plant P. australis. Waito-C rice seedlings were treated with the fungal culture filtrates to analyze their plant growth-promoting capacity. A bioassay of the Sm-3-7-5 fungal strain isolated from S. maritima confirmed that it had the highest plant growth-promoting capacity. Molecular identification of the Sm-3-7-5 strain revealed that it belongs to Alternaria alternata and is a producer of gibberellins. These findings provided a fundamental basis for understanding the symbiotic interactions between plants and fungi.

Diversity of bacterial and fungal endophytes in maize and their larvicidal effect against the spotted stem borer Chilo partellus

ABSTRACT The present study aimed to (i) determine the distribution of endophytes in selected genotypes, growth stages and parts of maize; (ii) evaluate the larvicidal effect of the endophytes against the spotted stem borer Chilo partellus and (iii) determine the level of colonisation of maize by endophytes. Compared with hybrid and landrace maize, open pollinated variety (OPV) maize exhibited a relatively diversified composition of endophytic bacteria. Among the 39 maize endophyte isolates screened for insecticidal antibiotic production, 11 (8 bacteria and 3 fungi) showed larvicidal activity against C. partellus. Isolate aueb-11 from the genus Bacillus showed the highest mortality (75.93%) against C. partellus. The bacterial isolates varied in terms of their activity to colonise the plant parts, and this was assessed using leaf and seed inoculation methods: in the foliar spray method, the maximum bacterial density recovered from the leaf and stem samples were 9.6 × 102 and 9.2 × 102 colony forming units per gram of sample, respectively. These effective isolates could be promising larvicide against C. partellus.

Drivers of richness and community composition of fungal endophytes of tree seeds.

Recent studies revealed a high diversity of fungal endophytes in traded tree seeds, including potential plant pathogens. The factors determining richness and composition of seed mycobiomes are poorly understood, but might be an important determinant for tree health. We assessed the relative impact of host identity, site, several site-specific environmental factors, and whether the host was sampled in its native or non-native distribution range, on the richness and composition of fungal seed endophytes of nine tree species across 15 sites in Europe and North America. Our results show that fungal richness was affected by host identity, but not by environmental variables or host distribution range. Fungal community composition was primarily driven by host identity, and to a lesser extent by environment. Around 25% of the 2147 amplicon sequence variants (ASVs) were generalists appearing on both continents and in both gymnosperms and angiosperms. Around 63% of the ASVs appeared in only gymnosperms or angiosperms, and 33% of the ASVs were associated with a single host species, while none were found in all tree species. Our results suggest that although seed trade might facilitate movements of fungi, their establishment and spread in the new environment might be limited by host availability.

Fungal endophyte diversity in table grapes.

Plant fungal endophytes are diverse microbial sources that reside inside plants. Grapes (Vitis vinifera) are rich in polyphenols that have beneficial health effects, and recent research has shown that fungal endophytes in grapes may contribute to the production of these polyphenols and may serve as biocontrol agents. In this study, we determined the fungal microbial endophyte diversity in North American table grapes found at a Winnipeg, Manitoba, market. The amplicon internal transcribed spacer (ITS) metagenomics approach was used to profile the fungal communities of the fruit endophyte microbiome of three table grape types. The data supported endophyte diversity in different table grapes, including possible bioactive, saprophytic, and pathogenic fungi. Culturable endophytes were isolated and identified by morphology and ITS amplicon sequencing. The majority of the isolated culturable strains included Alternaria spp. and Cladosporium spp. The results provided evidence of the existence of diverse fungal endophytes isolated and identified from the fruit of the table grapes. These fungal endophytes may have potential in agricultural, industrial, and pharmaceutical applications.

Fungal endophyte diversity in Paspalum and effects on plant growth

AbstractIn natural ecosystems, plants appear to be in symbiosis with diverse fungal endophytes which can have impacts on plant communities. Paspalum is one of the most important grass genera in South American grasslands. The aim of this work was to determine the presence of fungal endophytes in two Paspalum species and evaluate their effects on plant growth. Sixty plant samples were collected for Paspalum notatum in a rangeland in northeastern Argentina, and the same number for Paspalum dilatatum in central Argentina. A triple‐sterilization process was carried out by submerging small pieces of leaves and stems for the isolation of fungi from the collected plants. In order to identify endophytes, morphological characters and fungal sequences corresponding to the ITS (Internal Transcribed Spacer) region were analysed. A total of eight genera were identified: Acremonium, Alternaria, Aspergillus, Bipolaris, Cladosporium, Fusarium, Penicillium and Trichoderma. A greenhouse trial was conducted to determine the effects of fungal endophytes on growth. Trichoderma significantly increased relative chlorophyll content in P. notatum and Acremonium endophytes increased tiller number, and above‐ and below‐ground biomass in P. dilatatum. The diversity of fungal endophytes that was present in P. notatum and P. dilatatum was described. In conclusion, some aspects of growth of these Paspalum species seem to be positively affected by Trichoderma and Acremonium.

Species diversity of fungal endophytes across a stress gradient for plants.

Foliar fungal endophytes are one of the most diverse guilds of symbiotic fungi found in the photosynthetic tissues of every plant lineage, but it is unclear how plant environments and leaf resource availability shape their diversity. We explored correlations between leaf nutrient availability and endophyte diversity among Pinus muricata and Vaccinium ovatum plants growing across a soil nutrient gradient spanning a series of coastal terraces in Mendocino, California. Endophyte richness decreased in plants with higher leaf nitrogen-to-phosphorus ratios for both host species, but increased with sodium, which may be toxic to fungi at high concentrations. Isolation frequency, a proxy of fungal biomass, was not significantly predicted by any of the same leaf constituents in the two plant species. We propose that stressed plants can exhibit both low foliar nutrients or high levels of toxic compounds, and that both of these stress responses predict endophyte species richness. Stressful conditions that limit growth of fungi may increase their diversity due to the suppression of otherwise dominating species. Differences between the host species in their endophyte communities may be explained by host specificity, leaf phenology, or microclimates.

Endophytic fungal community in grape is correlated to foliar age and domestication

PurposeThe composition of endophytic communities has been shown to depend on grape genotypes and viticultural managements in leaves, stems, and berries of grape, but there have been relatively few reports exploring fungal endophytes associated with wild grape and foliar age.MethodsThe regions of internally transcribed spacer (ITS) were sequenced using the Illumina HiSeq to determine the diversity of fungal endophytes associated with European grape (Vitis vinifera cv. Red Globe) and Chinese wild grape (Vitis amurensis cv. Shuangyou) in young and mature leaves.ResultsA total of 3 phyla, 23 classes, 51 orders, 97 families, and 150 fungal genera were identified. Young leaves have significantly higher diversity and richness than that in mature leaves in both cultivars. Endophytic fungal diversity was greater in wild grapevines (119 genera) than in cultivated grapevines (81 genera) in both young and mature leaves. Endophytic fungal community structure was also significantly different between young leaves and mature leaves as well as in both cultivars based on statistical tests of ANOSIM and MRPP.ConclusionsOur results suggest that endophytic fungal communities were strongly affected by foliar age and domestication, which are crucial factors in establishing symbiotic associations with a selective enrichment for specific endophytes.