Abundance Of Functional Genes Research Articles

Greenhouse gas emission characteristics during kitchen waste composting with biochar and zeolite addition

Aerobic kitchen waste composting can contribute to greenhouse gas (GHGs) emissions and global warming. This study investigated the effects of biochar and zeolite on GHGs emissions during composting. The findings demonstrated that biochar could reduce N2O and CH4 cumulative releases by 47.7 %and 47.9 %, respectively, and zeolite could reduce the cumulative release of CO2 by 28.4 %. Meanwhile, the biochar and zeolite addition could reduce the abundance of potential core microorganisms associated with GHGs emissions. In addition, biochar and zeolite reduced N2O emissions by regulating the abundance of nitrogen conversion functional genes. Biochar and zeolite were shown to reduce the impact of bacterial communities on GHGs emissions. In summary, this study revealed that biochar and zeolite can effectively reduce GHG emissions during composting by altering the compost microenvironment and regulating microbial community structure. Such findings are valuable for facilitating high-quality resource recovery of organic solid waste.

Effects of different long-term fertilization on rhizosphere soil nitrogen mineralization and microbial community composition under the double-cropping rice field

ABSTRACT Soil extracellular enzymes play an important role in regulating nitrogen (N) mineralization processes in paddy fields. Therefore, in this work, we determine the influence of a long-term fertilizer regime on rhizosphere soil N fertilization rates, soil enzymes, soil microbial community (bacterial ureolytic community (ureC), bacterial chitinolytic community (chiA)) under the double-cropping rice field in southern of China. The field experiment included the following fertilizer regimes: inorganic fertilizer alone (IF), rice straw and inorganic fertilizer (RF), 30% organic manure and 70% inorganic fertilizer (OM), without any fertilizer input as a control (CK). The results showed that rhizosphere soil N transformation rates in the paddy fields with OM and RF treatments were increased, compared with IF and CK treatments. Soil urease, β-glucosaminidase and arginase activities were significantly increased under OM and RF treatments. This result indicated that functional gene abundances of sub, npr and chiA were significantly greater under RF and OM treatments compared to IF and CK treatments. Soil bacterial ureolytic and chitinolytic communities were significantly changed by the different fertilization strategies. The practice of applying rice straw and organic manure seems beneficial for increasing rhizosphere soil N mineralization rates and microbial community diversity in the double-cropping rice fields.

Effect of tire wear particle accumulation on nitrogen removal and greenhouse gases abatement in bioretention systems: Soil characteristics, microbial community, and functional genes

Tire wear particles (TWPs), as predominant microplastics (MPs) in road runoff, can be captured and retained by bioretention systems (BRS). This study aimed to investigate the effect of TWPs accumulation on nitrogen processes, focusing on soil characteristics, microbial community, and functional genes. Two groups of lab-scale bioretention columns containing TWPs (0 and 100 mg g−1) were established. The removal efficiencies of NH4+-N and TN in BRS significantly decreased by 7.60%–24.79% and 1.98%–11.09%, respectively, during the 101 days of TWPs exposure. Interestingly, the emission fluxes of N2O and CO2 were significantly decreased, while the emission flux of CH4 was substantially increased. Furthermore, prolonged TWPs exposure significantly influenced the contents of soil organic matter (increased by 27.07%) and NH4+-N (decreased by 42.15%) in the planting layer. TWPs exposure also significantly increased dehydrogenase activity and substrate-induced respiration rate, thereby promoting microbial metabolism. Microbial sequencing results revealed that TWPs decreased the relative abundance of nitrifying bacteria (Nitrospira and Nitrosomonas) and denitrifying bacteria (Dechloromonas and Thauera), reducing the nitrification rate by 42.24%. PICRUSt2 analysis further indicated that TWPs changed the relative abundance of functional genes related to nitrogen and enzyme-coding genes.

Effect of sodium dodecyl sulfate (SDS) on microbial community structure and function in lake–terrestrial ecotones: A simulation experiment

Even a low concentration of sodium dodecyl sulfate (SDS), a widely used bactericidal surfactant, can significantly change the species, quantity and genetic functions of microorganism communities in natural waters. Lake–terrestrial ecotones are areas where microorganisms are highly active, and they are also the lake areas most vulnerable to SDS pollution. Because microorganisms are very sensitive to environmental changes, their activities vary greatly among lakes and laboratories, so it is difficult to simulate their real dynamics using small-scale experiments. To study the interaction between SDS and microorganisms in a lake–terrestrial ecotone, a large artificial simulation device was used to analyse microbial community structure, phospholipid fatty acid (PLFA) content, gene function and ability to degrade SDS in a lake–terrestrial ecotone contaminated with SDS. The results showed that (1) the period from 2 to 4 days after the beginning of the experiment was the key stage for the biodegradation of SDS. The biodegradation cycle of SDS in the natural environment is shorter than that in small-scale experimental setups, and more than 90% of SDS was removed within 4 days in the simulation device. (2) Low-level SDS pollution (≤ 6 mg/L) has different effects on different types of lacustrine microorganisms. The presence of SDS can lead to a significant decrease in microbial diversity and biomass in lake–terrestrial ecotones with a high density of aquatic plants, but the opposite is true in ecosystems with degraded aquatic plant communities. (3) After SDS pollution occurred, pollution-resistant bacteria such as Chitinophaga and Flavobacterium became dominant. The relative abundance of carbon cycle functional genes increased rapidly in microorganisms, while the relative abundance of nitrogen cycle functional genes decreased. These changes were not readily reverse even after 20 days, although the communities recovered to a certain extent.

Metagenomic analysis of the intestinal microbiome reveals the potential mechanism involved in Bacillus amyloliquefaciens in treating schistosomiasis japonica in mice.

Targeted interventions of probiotics on gut microbiome were used to explore the mechanism of alleviating schistosomiasis japonica. Through metagenomic analysis, there were significant changes in the composition of gut microbiota in mice infected with Schistosoma japonicum and significant increase in the abundance of beneficial bacteria after the intervention of Bacillus amyloliquefaciens. At the same time, the abundance of functional genes was found to change significantly. The abundance of genes related to urease metabolism and xfp/xpk related to D-erythrose 4-phosphate production was significantly restored, highlighting the importance of Limosilactobacillus reuteri in the recovery and abundance of predicted genes of the gut microbiome. These results indicated potential regulatory mechanism between the gene function of gut microbiome and host immune response. Our research lays the foundation for elucidating the regulatory mechanism of probiotic intervention in alleviating schistosomiasis japonica, and provides potential adjuvant treatment strategies for early prevention and treatment of schistosomiasis japonica.

Inhibition of norfloxacin on fermentative hydrogen production: Performance evaluation and metagenomic analysis

Toxic chemicals can inhibit the dark fermentation process for renewable biohydrogen production. Norfloxacin (NOR), a typical antibiotic, is present in various feedstocks of dark fermentation, which has excellent antibacterial properties. It is hypothesized that NOR could cause adverse effects on fermentative hydrogen production, while current understanding of this subject is scare. This study investigated the potential inhibitory effect of NOR on dark hydrogen fermentation, and explored the underlying mechanisms from the perspectives of bacterial community structure and functional gene abundance. The results showed that NOR significantly reduced the hydrogen-producing capacity upon exposure to concentrations exceeding 10 mg/L. The hydrogen yield decreased from 1.56 to 0.27 H2/mol-glucose at NOR concentrations of 50 mg/L. NOR also prolonged the hydrogen-producing lag period. Bacterial community analysis revealed that NOR reduced the abundance of high-yielding H2-generating bacteria, such as Clostridium sp., while increasing the abundance of H2-consuming bacteria (e.g. Enterococcus sp.). Metagenomic analysis further indicated that crucial genes involved in glycolysis (e.g. HK, tal-pgi, pfk and PK) and hydrogen formation (e.g. por and E1.12.7.2) were remarkably downregulated under NOR exposure, essentially causing the inhibition of hydrogen production. This study contributes to a better understanding of how antibiotics inhibit dark hydrogen fermentation and provides a theoretical basis for reducing potential inhibitory effects.

Metagenomics study of soil microorganisms involved in the carbon cycle in a saline-alkaline meadow steppe in the Songnen Plain in Northeast China.

Soil microorganisms play an important role in regulating and contributing to carbon cycling processes in grassland ecosystems. Soil salinization is one of the major problems causing soil degradation, and its effects on carbon cycle immobilization-related functional genes in soil microorganisms remain unknown. Therefore, we took Songnen salinization grassland as the research object, selected grasslands with different salinization levels, and explored the diversity of soil microorganisms and functional genes related to carbon cycling in Songnen grassland with different salinization levels through metagenomic technology. The results showed that with the increase of salinity, the relative abundance of Ascomycetes increased, while the relative abundance of Proteus and Firmicutes decreased. In addition, the relative abundance of functional genes related to carbon cycling fixation has also decreased. As the degree of soil salinization increases, the relative abundance of glycoside hydrolases (GH)130 family significantly increases, while the relative abundance of soil carbohydrate enzymes belonging to GH3 and GH55 families significantly decreases. Using structural equation modeling (SEM), it was found that soil pH and conductivity (EC) have a significant impact on soil microbial diversity and functional genes related to carbon cycling fixation. The increase in soil pH directly reduces the Shannon diversity of soil microbial diversity and functional genes related to carbon cycling fixation. Therefore, it can be concluded that the intensification of grassland salinization reduces the diversity of bacteria and fungi, and affects the diversity of functional genes related to carbon cycling fixation by reducing the total diversity of bacteria. The increase in salinity has a negative feedback effect on grassland soil carbon cycling. This study provides a theoretical framework for grassland soil carbon sequestration and degradation restoration.

Rhizosphere-Associated Anammox Bacterial Diversity and Abundance of Nitrogen Cycle-Related Functional Genes of Emergent Macrophytes in Eutrophic Wetlands.

Rhizospheric microbial community of emergent macrophytes plays an important role in nitrogen removal, especially in the eutrophic wetlands. The objective of this study was to identify the differences in anammox bacterial community composition among different emergent macrophytes and investigate revealed the the main factors affecting on the composition, diversity, and abundance of anammox bacterial community. Results showed that the composition, diversity, and abundance of the anammox community were significantly different between the vegetated sediments of three emergent macrophytes and unvegetated sediment. The composition of the anammox bacterial community was different in the vegetated sediments of different emergent macrophytes. Also, the abundance of nitrogen cycle-related functional genes in the vegetated sediments was found to be higher than that in the unvegetated sediment. Canonical correspondence analysis (CCA) and structural equation models analysis (SEM) showed that salinity and pH were the main environmental factors influencing the composition and diversity of the anammox bacterial community and NO2--N indirectly affected anammox bacterial community diversity by affecting TOC. nirK-type denitrifying bacteria abundance had significant effects on the bacterial community composition, diversity, and abundance of anammox bacteria. The community composition of anammox bacteria varies with emergent macrophyte species. The rhizosphere of emergent macrophytes provides a favorable environment and promotes the growth of nitrogen cycling-related microorganisms that likely accelerate nitrogen removal in eutrophic wetlands.

Soil Microbiomes and their Arsenic Functional Genes in Chronically High-Arsenic Contaminated Soils.

Microbial arsenic transformations play essential roles in controlling pollution and ameliorating risk. This study combined high-throughput sequencing and PCR-based approaches targeting both the 16S rRNA and arsenic functional genes to investigate the temporal and spatial dynamics of the soil microbiomes impacted by high arsenic contamination (9.13 to 911.88mg/kg) and to investigate the diversity and abundance of arsenic functional genes in soils influenced by an arsenic gradient. The results showed that the soil microbiomes were relatively consistent and mainly composed of Actinobacteria (uncultured Gaiellales and an unknown_67 - 14 bacterium), Proteobacteria, Firmicutes (particularly, Bacillus), Chloroflexi, and Acidobacteria (unknown_Subgroup_6). Although a range of arsenic functional genes (e.g., arsM, arsC, arrA, and aioA) were identified by shotgun metagenomics, only the arsM gene was detected by the PCR-based method. The relative abundance of the arsM gene accounted for 0.20%-1.57% of the total microbial abundance. Combining all analyses, arsenic methylation mediated by the arsM gene was proposed to be a key process involved in the arsenic biogeochemical cycle and mitigation of arsenic toxicity. This study advances our knowledge about arsenic mechanisms over the long-term in highly contaminated soils.

Effects of organic fertilizer from traditional Chinese medicine residues on growth and soil microbial community of Salvia miltiorrhiza by metagenomic technique

Soil microbiome is a key evaluation index of soil health. Previous studies have shown that organic fertilizer from traditional Chinese medicine(TCM)residues can improve the yield and quality of cultivated traditional Chinese medicinal materials. However, there are few reports on the effects of organic fertilizer from TCM residues on soil microbiome. Therefore, on the basis of evaluating the effects of organic fertilizer from TCM residues on the yield and quality of cultivated Salvia miltiorrhiza, the metagenomic sequencing technique was used to study the effects of organic fertilizer from TCM residues on rhizosphere microbiome community and function of cultivated S. miltiorrhiza. The results showed that:(1) the application of organic fertilizer from TCM residues promoted the growth of S. miltiorrhiza and the accumulation of active components, and the above-ground and underground dry weight and fresh weight of S. miltiorrhiza increased by 371.4%, 288.3%, 313.4%, and 151.9%. The increases of rosmarinic acid and salvianolic acid B were 887.0% and 183.0%.(2)The application of organic fertilizer from TCM residues significantly changed the rhizosphere bacterial and fungal community structures, and the microbial community composition was significantly different.(3)The relative abundance of soil-beneficial bacteria, such as Nitrosospira multiformis, Bacillus subtilis, Lysobacter enzymogenes, and Trichoderma was significantly increased by the application of organic fertilizer from TCM residues.(4)KEGG function prediction analysis showed that metabolism-related microorganisms were more easily enriched in the soil environment after organic fertilizer application. The abundance of functional genes related to nitrification and denitrification could also be increased after the application of organic fertilizer from TCM residues. The results of this study provide guidance for the future application of organic fertilizer from TCM residues in the cultivation of traditio-nal Chinese medicinal materials and enrich the content of green cultivation technology of traditional Chinese medicinal materials.

Biochar induced trade-offs and synergies between ecosystem services and crop productivity

Biochar amendment offers a chance for sustainable agriculture. However, the effectiveness of biochar relies on its physical and chemical properties, which are heavily affected by biochar production conditions and management practices. Therefore, substantial uncertainties regarding the use of biochar exist in agricultural systems globally. This study provides the first quantitative evaluation of the impacts of biochar characteristics and management practices on key ecosystem services by performing a second-order meta-analysis based on 34,628 paired observations in biochar-amended and unamended systems. Overall, biochar enhances phytotoxicity alleviation, physiology regulation, soil remediation and carbon sequestration, and microbial functional gene abundance. However, some prominent trade-offs exist between crop productivity and ecosystem service deliveries including for nutrient cycling, microbial function, climate change mitigation, and the soil microbial community). The adoption of low C:N biochar produced at high pyrolysis temperatures from sewage sludge-derived feedstock, in combination with a moderate application rate and inorganic fertilizer input, shows potential for achieving synergistic promotion of crop productivity and ecosystem services. These outcomes highlight the need for judicious implementation of biochar-based solutions to site-specific soil constraints. The quantified synergy and tradeoff relationships will aid the establishment of a sustainable biochar development framework that strengthens necessary ecosystem services commensurate with food security assurance.

Effects of environmentally relevant concentrations of oxytetracycline and sulfadiazine on the bacterial communities, antibiotic resistance genes, and functional genes are different between maize rhizosphere and bulk soil.

Antibiotic contamination in soil has become a major concern worldwide. At present, it is not clear how two co-existed antibiotics with environmentally relevant concentrations would affect soil bacterial community structure, the abundances of antibiotic resistance genes (ARGs) and functional genes, and whether the effects of antibiotics would differ between rhizosphere and bulk soil. We conducted a greenhouse pot experiment to grow maize in a loess soil treated with oxytetracycline (OTC) or sulfadiazine (SDZ) or both at an environmentally relevant concentration (1 mg kg-1) to investigate the effects of OTC and SDZ on the rhizosphere and bulk soil bacterial communities, abundances of ARGs and carbon (C)-, nitrogen (N)-, and phosphorus (P)-cycling functional genes, and on plant growth and plant N and P nutrition. The results show that the effects of environmentally relevant concentrations of OTC and SDZ on bacterial communities and abundances of ARGs and functional genes differ between maize rhizosphere and bulk soil. The effects of two antibiotics resulted in a higher absolute abundances of accA, tet(34), tnpA-04, and sul2 in the rhizosphere soil than in the bulk soil and different bacterial community compositions and biomarkers in the rhizosphere soil and the bulk soil. However, OTC had a stronger inhibitory effect on the abundances of a few functional genes in the bulk soil than SDZ did, and their combination had no synergistic effect on plant growth, ARGs, and functional genes. The role of co-existed OTC and SDZ decreased shoot height and increased root N concentration. The results demonstrate that environmentally relevant concentrations of antibiotics shift soil microbial community structure, increase the abundances of ARGs, and reduce the abundances of functional genes. Furthermore, soil contamination with antibiotics can diminish agricultural production via phytotoxic effects on crops, and combined effects of antibiotics on plant growth and nutrient uptake should be considered.

Interaction of reed litter and biochar presences on performances of constructed wetlands

Constructed wetlands (CWs) are frequently used for effective biological treatment of nitrogen-rich wastewater with external carbon source addition; however, these approaches often neglect the interaction between plant litter and biochar in biochar-amended CW environments. To address this, we conducted a comprehensive study to assess the impacts of single or combined addition of common reed litter and reed biochar (pyrolyzed at 300 and 500 °C) on nitrogen removal, greenhouse gas emission, dissolved organic matter (DOM) dynamics, and microbial activity. The results showed that combined addition of reed litter and biochar to CWs significantly improved nitrate and total nitrogen removal compared with biochar addition alone. Compared to those without reed litter addition, CWs with reed litter addition had more low-molecular-weight and less aromatic DOM and more protein-like fluorescent DOM, which favored the enrichment of bacteria associated with denitrification. The improved nitrogen removal could be attributed to increases in denitrifying microbes and the relative abundance of functional denitrification genes with litter addition. Moreover, the combined addition of reed litter and 300 °C-heated biochar significantly decreased nitrous oxide (30.7 %) and methane (43.9 %) compared to reed litter addition alone, while the combined addition of reed litter and 500 °C-heated biochar did not. This study demonstrated that the presences of reed litter and biochar in CWs could achieve both high microbial nitrogen removal and relatively low greenhouse gas emissions.

Response of microbial community diversity and the abundance of nitrogen-cycling genes to Bacillus subtilis application in mulberry field soil

Context Bacillus subtilis (BS) is a widely used microbial agent that could improve soil fertility and soil microenvironment. There is still uncertainty about the suitability of BS for cultivating crops with high demand for nitrogen fertiliser. Aims To evaluate the effects of BS agent on microbial community diversity and nitrogen-cycling genes in mulberry rhizosphere soil. Methods Pot experiments were conducted. Different dosages (CK, 0; T1, 0.5 × 106 CFU g−1 soil; T2, 1 × 106 CFU g−1 soil; T3, 2 × 106 CFU g−1 soil) of BS agent were applied to irrigate the mulberry soil. The soil nutrient content, enzyme activity, bacterial community, and nitrogen-cycling genes were determined. Key results T1 had the highest Chao1 and Shannon index, while T3 had the lowest. BS-treated samples had higher relative abundance of Actinobacteria and Chloroflexi than that of CK. Specially, BS-treated samples had higher relative abundance of Sphingomonas, Reyranella, and Hyphomicrobium, which was significantly positively correlated with the content of organic matter, total soluble nitrogen, ammonium nitrogen, and the activity of sucrase. The abundance of genes involved in amino acid metabolism, energy metabolism, metabolism of cofactors, and vitamin functions also increased in the BS-treated samples. BS treatment significantly increased the abundance of AOA-amoA and nirK genes, but decreased the abundance of nirS and nifH genes. Conclusions An appropriate amount of BS agent could improve soil fertility, regulate the dominant bacterium communities, and affect the abundance of functional genes involved in nitrogen cycling. Implications BS is probably a good choice for mulberry cultivation to improve nitrogen fertiliser utilisation efficiency.

Improved Formation of Biomethane by Enriched Microorganisms from Different Rank Coal Seams.

The influence of enrichment of culturable microorganisms in in situ coal seams on biomethane production potential of other coal seams has been rarely studied. In this study, we enriched culturable microorganisms from three in situ coal seams with three coal ranks and conducted indoor anaerobic biomethane production experiments. Microbial community composition, gene functions, and metabolites in different culture units by 16S rRNA high-throughput sequencing combined with liquid chromatography-mass spectrometry-time-of-flight (LC-MS-TOF). The results showed that biomethane production in the bituminous coal group (BC)cc resulted in the highest methane yield of 243.3 μmol/g, which was 12.3 times higher than that in the control group (CK). Meanwhile, Methanosarcina was the dominant archaeal genus in the three experimental groups (37.42 ± 11.16-52.62 ± 2.10%), while its share in the CK was only 2.91 ± 0.48%. Based on the functional annotation, the relative abundance of functional genes in the three experimental groups was mainly related to the metabolism of nitrogen-containing heterocyclic compounds such as purines and pyrimidines. Metabolite analysis showed that enriched microorganisms promoted the degradation of a total of 778 organic substances in bituminous coal, including 55 significantly different metabolites (e.g., purines and pyrimidines). Based on genomic and metabolomic analyses, this paper reconstructed the heterocyclic compounds degradation coupled methane metabolism pathway and thereby preliminarily elucidated that enriched culturable bacteria from different coal-rank seams could promote the degradation of bituminous coal and intensify biogenic methane yields.

Highly efficient low-temperature biodegradation of nitrogenous pollutions in domestic wastewater via immobilized-microbial bioaugmentation coupled with hybrid membrane bioreactor

Bioaugmentation has been widely applied to domestic wastewater treatment. However, low temperature significantly inhibits the treatment efficacy of bioaugmentation. In this study, the engineered Paracoccus denitrificans expressing AMO and Nirs (rPARD) was constructed. The removal efficiencies of rPARD coupled with hybrid membrane bioreactor (HMBR) for treating domestic wastewater under low temperature (4–8 °C) were investigated. Immobilized-microbial bioaugmentation using rPARD (irPARD) coupled with HMBR (irPARD-HMBR) enhanced the nitrogenous metabolism by driving heterotrophic nitrification-aerobic denitrification. The removal efficacies of ammonia nitrogen (NH4-H), total nitrogen (TN), chemical oxygen demand (COD), and biochemical oxygen demand (BOD) in irPARD-HMBR were 95.6 %, 92.5 %, 96.2 % and 98.2 %, respectively. Microbial analysis demonstrated that the relatively high abundance of rPARD (75.4 %) and functional genes (72.5 %) upregulated the activities of key enzymes involved in nitrogenous metabolism. In addition, irPARD significantly increased the abundance of nitrogen metabolism-related functional genes in the treatment system. Furthermore, the application of irPARD-HMBR showed shorter hydraulic retention time (HRT), sludge retention time (SRT), lower operational cost (0.32 yuan/m3) and greenhouse gas (GHG) emissions (0.56 kg CO2eq/d). In conclusion, findings indicate that irPARD-HMBR presents potential application for treating domestic wastewater under low temperature.

Construction of an effective method combining in situ capping with electric field-enhanced biodegradation for treating PAH-contaminated soil at abandoned coking sites

The simultaneous application of in situ capping and electro-enhanced biodegradation may be a suitable method for ensuring the feasibility and safety of reusing abandoned coking sites. However, the capping layer type and applied electric field pattern may affect the efficiency of sequestering and removing pollutants. This study investigated changes in electric current, soil moisture content and pH, polycyclic aromatic hydrocarbon (PAH) concentration, bacterial number, and microbial community structure and metabolic function during soil remediation at abandoned coking plant sites under different applied electric field patterns and barrier types. The results indicated that polarity-reversal electric field was more conducive to maintaining electric current, soil properties, resulting in higher microbial number, community diversity, and functional gene abundance. At 21d, the mean PAH concentrations in contaminated soil, the capping layer's clean soil and barrier were 78.79, 7.56, and 1.57 mg kg−1 lower than those with a unidirectional electric field, respectively. The mean degradation rate of PAHs in the bio-barrier was 10.12 % higher than that in the C-Fe barrier. In the experiment combining a polarity-reversal electric field and a bio-barrier, the mean PAH concentrations in contaminated soil and the capping layer were 706.68 and 27.15 mg kg−1 lower than those in other experiments, respectively, and no PAHs were detected in the clean soil, demonstrating that the combination of the polarity-reversal electric field and the bio-barrier was effective in treating soil at abandoned coking plant sites. The established method of combining in situ capping with electro-enhanced biodegradation will provide technical support for the treatment and reuse of heavily PAH-contaminated soil at abandoned coking plant sites.

The maturity, humus content, and microbial metabolic function of sheep manure compost on the Qinghai-Tibet Plateau can be significantly improved by reducing the moisture content.

The Qinghai-Tibet Plateau (QTP) is characterized by an extreme hypoxia, which may lead to lack of sufficient oxygen for compost production, and thus seriously affecting the compost quality. The moisture content (MC) has a direct effect on the oxygen content of composting pile. At present, the research on the optimum moisture content of compost production on the QTP is still lacking. This study aimed to investigate the influences of MC on fermentation quality of sheep manure composting on the QTP and to further analyze the changes of microbial metabolic function and enzyme activity under different MC. Composting experiment with low MC (45%) and conventional MC (60%) was conducted in both summer and autumn. The results showed that the composting efficiency of 45% MC was better than 60% in both seasons, which was mainly manifested as longer high-temperature period (summer:16d vs 14d, autumn: 7d vs 2d), higher germination index (summer:136.1% vs 128.6%, autumn:103.5% vs 81.2%), and more humus synthesis (summer:159.8g/kg vs 151.2g/kg, autumn:136.1k/kg vs 115.5k/kg). The 45% MC can improve microbial metabolism, including increasing the abundance of functional genes involved in carbohydrate metabolism, amino acid metabolism, and nucleotide metabolism and improving the activities of cellulase, β-glucosidase, protease, polyphenol oxidase, and peroxidase. In conclusion, 45% MC can improve the fermentation efficiency and products quality of sheep manure compost on QTP.

Elevated hydrostatic pressure enhances the potential for microbially mediated carbon sequestration at the sediment–water interface in a deep-water reservoir by modulating functional genes and metabolic pathways

Microbially mediated carbon cycling is essential for the production of refractory dissolved organic carbon and subsequent formation of stable carbon sinks at the sediment–water interface (SWI) in aquatic ecosystems, such as lakes. It remains unclear how this process is influenced by hydrostatic pressure changes due to water level fluctuation in deep-water reservoirs. Here, a microcosm simulation experiment was carried out to decipher the response of microbially mediated carbon cycling to various hydrostatic pressures (i.e., 0.1 MPa [atmospheric pressure], 0.2 MPa, 0.5 MPa, 0.7 MPa) at the SWI in Jinpen Reservoir, Shaanxi Province, China. The response mechanisms of microbial community structure, functional gene abundance, and metabolic pathway activity associated with carbon cycling were explored by metagenomics and metabolomics. Results showed that the number of microbial species in sediment samples increased with elevating pressure. The relative abundance of archaea also increased from 0.2% to 0.4% as a consequence of pressure elevation, accompanied by 0.17% and 0.03% decrease in bacteria and fungi, respectively. In contrast with low pressures, high pressures allowed the microbial communities to form a more closely connected network, which maintained more complex interspecies interactions and greater system stability. High pressures additionally improved the abundances of specific functional genes (e.g., ALDO, ACO, sdhA, and sdhC) in carbon metabolic pathways, promoted carbon fixation by the reductive pentose phosphate (Calvin) and citrate cycles, and hindered methanogenesis. Piezophilic taxa (e.g., Gammaproteobacteria, Alphaproteobacteria, Bacteroidetes) and genes (e.g., ompH, asd) were identified among carbon cycling-associated microbial communities. The piezophilic genes, which were mainly present in the Proteobacteria phylum, increased first and then decreased in abundance with elevating pressure. The findings indicate that elevated hydrostatic pressure contributes to carbon sequestration at the SWI in deep-water reservoirs by changing carbon cycling-associated microbial species, as well as relevant functional genes and metabolic pathways.Graphical

Mechanism of Iris sibirica and aeration combination on promoting the water purification performance of constructed wetland under low temperature.

Temperature is an important factor affecting the water purification performance of constructed wetland (CW). In the previous study, the combined measures of Iris sibirica and aeration at the bottom of the first quarter filtration chamber could improve the pollutant removal capacity of CW at low temperature. However, the mechanism between the combined measures of Iris sibirica and aeration on enhancing the performance of domestic sewage treatment is unclear. Our study aims to provide scientific validation for the combined measure through monitoring the concentrations of dissolved oxygen (DO), chemical oxygen demand (CODCr), ammonia nitrogen (NH4+-N), and total nitrogen (TN) along the water flow pathway of the CW and measuring the superoxide dismutase (SOD) activities of the plants and the abundance of nitrogen cycle-related microbial functional genes in the substrates of CW to explore the mechanism of combined measures promoting the removal efficiency of the CW under low-temperature stress. Results showed that aerating at the bottom of the first quarter filtration chamber increased DO concentration in the front part of the CW, which benefited the aerobic removal of pollutants and the activities of microorganisms, and the removal CODCr and NH4+-N occurred mainly in the front part of the CW. SOD activities showed that I. sibirica had better resistance to low temperature than Canna indica did. The combined measures of I. sibirica and aeration activated the activities of microorganisms, increased the abundance of the denitrification process genes along the water flow pathway and formed a clear nitrification-denitrification zone in the CW, thus promoted the nitrogen removal efficiency at low temperature. Therefore, this study confirmed the feasibility of the combined measures from a mechanistic perspective.