In this paper, the anti-windup strategy for two degree of freedom (TDOF) control system is proposed. In TDOF control system, the input saturation can be avoided by designing the suitable command response property for nominal model. In real controlled systems, however, the input saturation may occur because of unknown disturbance or plant variation. The proposed method can suppress the windup phenomena by modelling the limiter into TDOF controller and adjusting the limitation between feedback and feedforward control. The proposed anti-windup controller (AWC) has the form of left coprime factorization of feedback and feedforward controllers. The proposed method is evaluated by simulation and experiment of position control system of DC servo motor.