We study the central charges and levels of a two-dimensional N = (0, 4) superconformal field theory describing four-dimensional BPS black holes in F-theory. These arise from D3-branes wrapping a curve in the base of an elliptically fibered Calabi-Yau threefold times a circle, and probe a transverse Taub-NUT space. The near horizon geometry of these D3-branes is AdS3 × S3/ℤm, where m is the NUT charge. Starting from a six-dimensional supergravity effective action we compute three-dimensional Chern-Simons terms to deduce the central charges and levels. We find that it is crucial to integrate out an infinite tower of massive Kaluza-Klein states on S3/ℤm to match the expected microscopic results. The induced corrections turn out to contribute at leading order to the central charges and levels, which in turn determine the black hole entropy.