Aerenchyma Formation Research Articles

The molecular regulatory mechanism of reed canary grass under salt, waterlogging, and combined stress was analyzed by transcriptomic analysis

BackgroundReed canary grass has been identified as a suitable species for restoring plateau wetlands and understanding plant adaptation mechanisms in wetland environments. In this study, we subjected a reed canary grass cultivar ‘Chuanxi’ to waterlogging, salt, and combined stresses to investigate its phenotypic characteristics, physiological indices, and transcriptome changes under these conditions.ResultsThe results revealed that the growth rate was slower under salt stress than under waterlogging stress. The chlorophyll content and energy capture efficiency of the PS II reaction center decreased with prolonged exposure to each stress. Conversely, while the activities of enzymes associated with respiratory metabolism, as well as MDA, PRO, Na+, and K+-ATPase, increased. The formation of distinct aerenchyma was observed under waterlogging stress and combined stress. Transcriptome sequencing analysis identified 5,379, 4,169, and 14,993 DEGs under CK vs. W, CK vs. S, and CK vs. SW conditions, respectively. The WRKY was found to be the most abundant under waterlogging stress, whereas the MYB predominated under salt stress and combined stress. Glutathione metabolic pathways and Plant hormone signal transduction have also been found to play important roles in stress.ConclusionBy integrating phenotypic, physiological, anatomical, and transcriptomic, this research provides valuable insights into how reed canary grass responds to salt, waterlogging, and combined stresses. These findings may inform the ecological application of reed canary grass in high-altitude wetlands and for breeding purposes.

Silicon weakens the outer apoplastic barrier in roots of rice and delays its formation, resulting in increased Na+ and Cl− fluxes to the shoot

In rice, silicon can mitigate abiotic and biotic stresses. We therefore investigated the effect of Si on key root traits related to soil flooding and salinity tolerance with emphasis on the outer apoplastic barrier and cortical aerenchyma. We tested the hypothesis that Si application alters the phenotypic response of these root traits by growing rice in nutrient solutions without or with Si, designed to mimic drained or flooded soils. We measured the barrier strength through resistance to O2 and water of the outer parts of adventitious roots along with cortical aerenchyma and other root structural traits. We found that Si delayed the barrier formation and caused lower amounts of inducible cortical aerenchyma. The delay in barrier formation resulted in higher xylem loading of Na+ and Cl-, i.e., the sap flux of both ions was significantly higher for plants with access to Si. The increased ion fluxes correlated with lower lignin and suberin deposition in the outer part of the root. Consequently, we do not recommend using Si application to alleviate combined stress of salinity and soil flooding in rice, since the barrier was more permeable to O2, and the aerenchyma formation was less pronounced in roots with Si.

CDPK5 and CDPK13 play key roles in acclimation to low oxygen through the control of RBOH-mediated ROS production in rice

Abstract CALCIUM-DEPENDENT PROTEIN KINASE (CDPK) stimulates reactive oxygen species (ROS)-dependent signaling by activating RESPIRATORY BURST OXIDASE HOMOLOG (RBOH). The lysigenous aerenchyma is a gas space created by cortical cell death that facilitates oxygen diffusion from the shoot to the root tips. Previously, we showed that RBOHH is indispensable for the induction of aerenchyma formation in rice (Oryza sativa) roots under low-oxygen conditions. Here, we showed that CDPK5 and CDPK13 localize to the plasma membrane where RBOHH functions. Mutation analysis of the serine at residues 92 and 107 of RBOHH revealed that these residues are required for CDPK5- and CDPK13-mediated activation of ROS production. The requirement of Ca2+ for CDPK5 and CDPK13 function was confirmed using in vitro kinase assays. CRISPR/Cas9-based mutagenesis of CDPK5 and/or CDPK13 revealed that the double knockout almost completely suppressed inducible aerenchyma formation, whereas the effects were limited in the single knockout of either CDPK5 or CDPK13. Interestingly, the double knockout almost suppressed the induction of adventitious root formation, which is widely conserved in vascular plants, under low-oxygen conditions. Our results suggest that CDPKs are essential for the acclimation of rice to low-oxygen conditions and also for many other plant species conserving CDPK-targeted phosphorylation sites in RBOH homologs.

Low nitrate under waterlogging triggers exodermal suberization to form a barrier to radial oxygen loss in rice roots.

To acclimate to hypoxic waterlogged conditions, the roots of wetland plants form a radial oxygen loss (ROL) barrier that can promote oxygen diffusion to the root tips. We hypothesized that the low-nitrate concentrations that occur after molecular oxygen is consumed in waterlogged soils are an environmental trigger for ROL barrier formation in rice (Oryza sativa). We previously identified 128 tissue-specific up/downregulated genes during rice ROL barrier formation. The RiceXPro database showed that many of these genes were differentially regulated in response to nitrogen deficiency. Therefore, we assessed changes in the concentrations of ionic species of nitrogen under stagnant conditions, i.e. in a nutrient solution that mimics waterlogged soil conditions, and examined the effects of an increase or decrease of nitrate in the nutrient solution on ROL barrier formation and exodermal suberization. Preventing nitrate deficiency in the stagnant nutrient solution suppressed the formation of an ROL barrier. Conversely, a decrease in nitrate strongly induced ROL barrier formation, even under aerated conditions. In parallel with ROL barrier formation, suberin lamellae formed at the exodermis. Nitrate deficiency also promoted aerenchyma formation and the enlargement of root diameters. These findings suggest that the severe decline of nitrates under waterlogged conditions is an environmental cue for exodermal suberization to form an ROL barrier in rice roots.

Response of endophyte‐infected and endophyte‐free tall fescue plants to partial submergence at two developmental stages

AbstractTall fescue (Festuca arundinacea Schreb.) is a perennial C3 grass species usually associated with the endophyte fungus Epichloë coenophiala that enhances tolerance to biotic and abiotic stresses. Given that the proportion of infected tall fescue plants in the grasslands of the Flooding Pampa (Argentina) has been progressively increasing, it is proposed that endophytes confer tolerance to the stresses characteristic of that environment, especially flooding. Plants from a naturalized population and a commercial cultivar were grown, both with and without endophyte (wild type and AR584 respectively). The plants were subjected to two submergence treatments (i.e., control and partial submergence) in two development stages (5‐leaf stage and beginning of the elongation of internodes). Plant performance (aerial and root biomass, root aerenchyma formation, total root length and root diameter, proportion of reproductive tillers, number of panicles and seeds produced) and endophyte transmission to progeny were evaluated. Endophytes did not alter the ecological fitness of plants under partial submergence. Independently of the water condition, the symbiosis was linked to low biomass in plants from the naturalized population, while the opposite occurred in plants from the cultivar. Partial submergence did not affect the germination of the seeds produced, nor the transmission of the endophyte to the seedlings that originated from them. Our work suggests that the invasion ability of tall fescue in the Flooding Pampa grasslands is not related to an endophyte‐mediated improvement of plants to tolerate water excess.

Unraveling Key Factors for Hypoxia Tolerance in Contrasting Varieties of Cotton Rose by Comparative Morpho-physiological and Transcriptome Analysis.

The cotton rose (Hibiscus mutabilis) is a plant species commonly found in tropical and subtropical regions. It is remarkably resilient to waterlogging stress; however, the underlying mechanism behind this trait is yet unknown. This study used hypoxia-tolerant "Danbanhong" (DBH) and more hypoxia-sensitive "Yurui" (YR) genotypes and compared their morpho-physiological and transcriptional responses to hypoxic conditions. Notably, DBH had a higher number of adventitious roots (20.3) compared to YR (10.0), with longer adventitious roots in DBH (18.3 cm) than in YR (11.2 cm). Furthermore, the formation of aerenchyma was 3-fold greater in DBH compared to YR. Transcriptomic analysis revealed that DBH had more rapid transcriptional responses to hypoxia than YR. Identification of a greater number of differentially expressed genes (DEGs) for aerenchyma, adventitious root formation and development, and energy metabolism in DBH supported that DBH had better morphological and transcriptional adaptation than YR. DEG functional enrichment analysis indicated the involvement of variety-specific biological processes in adaption to hypoxia. Plant hormone signaling transduction, MAPK signaling pathway and carbon metabolism played more pronounced roles in DBH, whereas the ribosome genes were specifically induced in YR. These results show that effective multilevel coordination of adventitious root development and aerenchyma, in conjunction with plant hormone signaling and carbon metabolism, is required for increased hypoxia tolerance. This study provides new insights into the characterization of morpho-physiological and transcriptional responses to hypoxia in H. mutabilis, shedding light on the molecular mechanisms of its adaptation to hypoxic environments.

Sub1 QTL confers submergence tolerance in rice through nitro-oxidative regulation and phytohormonal signaling

Constant change in global climate has become the most important limiting factor to crop productivity. Asymmetrical precipitations are causing recurrent flood events around the world. Submergence is one of the most detrimental abiotic stresses for sustainable rice production in the rainfed ecosystems of Southeast Asia. Therefore, the development of submergence-tolerant rice is an essential requirement to encounter food security. Submergence tolerance in rice is governed by the major quantitative trait locus (QTL) designated as Submergence1 (Sub1) near the centromere of chromosome 9. The introduction of the Sub1 in high-yielding rice varieties producing near-isogenic lines (NILs) has shown extreme submergence tolerance. The present study aimed to understand the responses of rice genotype IR64 and its Sub1 NIL IR64 Sub1 following one week of complete submergence treatment. Submergence imposed severe nitro-oxidative stress in both the rice genotypes, consequently disrupting the cellular redox homeostasis. In this study, IR64 exhibited higher NADPH oxidase activity accompanied by increased reactive oxygen species, reactive nitrogen species, and malondialdehyde buildups and cell death under submergence. Higher accumulations of 1-Aminocyclopropane-1-carboxylic acid, gibberellic acid, and Indole-3-acetic acid were also observed in IR64 which accelerated the plant growth and root cortical aerenchyma development following submergence. In contrast, IR64 Sub1 had enhanced submergence tolerance associated with an improved antioxidant defense system with sustainable morpho-physiological activities and restricted root aerenchyma formation. The comprehensive analyses of the responses of rice genotypes with contrasting submergence tolerance may demonstrate the intricacies of rice under complete submergence and may potentially contribute to improving stress resilience by advancing our understanding of the mechanisms of submergence tolerance in rice.

Nitric oxide, energy, and redox-dependent responses to hypoxia.

Hypoxia occurs when oxygen levels fall below the levels required for mitochondria to support respiration. Regulated hypoxia is associated with quiescence, particularly in storage organs (seeds) and stem cell niches. In contrast, environmentally induced hypoxia poses significant challenges for metabolically active cells that are adapted to aerobic respiration. The perception of oxygen availability through cysteine oxidases, which function as oxygen-sensing enzymes in plants that control the N-degron pathway, and the regulation of hypoxia-responsive genes and processes is essential to survival. Functioning together with reactive oxygen species (ROS), particularly hydrogen peroxide (H2O2) and reactive nitrogen species (RNS), such as nitric oxide (·NO), nitrogen dioxide (·NO2), S-nitrosothiols (SNOs), and peroxynitrite (ONOO-), hypoxia signaling pathways trigger anatomical adaptations such as formation of aerenchyma, mobilization of sugar reserves for anaerobic germination, formation of aerial adventitious roots, and the hyponastic response. NO and H2O2 participate in local and systemic signaling pathways that facilitate acclimation to changing energetic requirements, controlling glycolytic fermentation, the γ-aminobutyric acid (GABA) shunt, and amino acid synthesis. NO enhances antioxidant capacity and contributes to the recycling of redox equivalents in energy metabolism through the phytoglobin (Pgb)-NO cycle. Here, we summarize current knowledge of the central role of NO and redox regulation in adaptive responses that prevent hypoxia-induced death in challenging conditions such as flooding.

The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection

Sorghum bicolor is among the most important cereals globally and a staple crop for smallholder farmers in sub-Saharan Africa. Approximately 20% of sorghum yield is lost annually in Africa due to infestation with the root parasitic weed Striga hermonthica. Existing Striga management strategies are not singularly effective and integrated approaches are needed. Here, we demonstrate the functional potential of the soil microbiome to suppress Striga infection in sorghum. We associate this suppression with microbiome-mediated induction of root endodermal suberization and aerenchyma formation and with depletion of haustorium-inducing factors, compounds required for the initial stages of Striga infection. We further identify specific bacterial taxa that trigger the observed Striga-suppressive traits. Collectively, our study describes the importance of the soil microbiome in the early stages of root infection by Striga and pinpoints mechanisms of Striga suppression. These findings open avenues to broaden the effectiveness of integrated Striga management practices.

Phytohormonal regulation determines the organization pattern of shoot aerenchyma in greater duckweed (Spirodela polyrhiza).

Airspace or aerenchyma is crucial for plant development and acclimation to stresses such as hypoxia, drought, and nutritional deficiency. Although ethylene-mediated signaling cascades are known to regulate aerenchyma formation in stems and roots under hypoxic conditions, the precise mechanisms remain unclear. Moreover, the cellular dynamics underlying airspace formation in shoots are poorly understood. We investigated the stage-dependent structural dynamics of shoot aerenchyma in greater duckweed (Spirodela polyrhiza), a fast-growing aquatic herb with well-developed aerenchyma in its floating fronds. Using X-ray micro-computed tomography and histological analysis, we showed that the spatial framework of aerenchyma is established before frond volume increases, driven by cell division and expansion. The substomatal cavity connecting aerenchyma to stomata formed via programmed cell death (PCD) and was closely associated with guard cell development. Additionally, transcriptome analysis and pharmacological studies revealed that the organization of aerenchyma in greater duckweed is determined by the interplay between PCD and proliferation. This balance is governed by spatiotemporal regulation of phytohormone signaling involving ethylene, abscisic acid, and salicylic acid. Overall, our study reveals the structural dynamics and phytohormonal regulation underlying aerenchyma development in duckweed, improving our understanding of how plants establish distinct architectural arrangements. These insights hold the potential for wide-ranging application, not only in comprehending aerenchyma formation across various plant species but also in understanding how airspaces are formed within the leaves of terrestrial plants.

The uptake, transportation, and chemical speciation of Sb(III) and Sb(V) by wetland plants Arundinoideae (Phragmites australis) and Potamogetonaceae (Potamogeton crispus)

Antimony (Sb) is increasingly released and poses a risk to the environment and human health. Antimonite (Sb(III)) oxidation can decrease Sb toxicity, but the current knowledge regarding the effects of Sb(III) and antimonate (Sb(V)) exposure is limited to wetland plants, especially the Sb speciation in plants. In this study, Phragmites australis and Potamogeton crispus were exposed to 10 and 30 mg/L Sb(III) or Sb(V) for 20 days. The total concentration, subcellular distribution, and concentration in the iron plaque of Sb were determined. The Sb speciation in plants was analyzed by HPLC-ICP-MS. It illustrated that Sb(III) exposure led to more Sb accumulation in plants than Sb(V) treatments, with the highest Sb concentration of 405.35 and 3218 mg/kg in Phragmites australis and Potamogeton crispus, respectively. In the subcellular distribution of Sb, accumulation of Sb mainly occurred in cell walls and cell cytosol. In Phragmites australis, the transport factor in the Sb(V) treatments was about 3 times higher than the Sb(III) treatments, however, it was lower in the Sb(V) treatments than Sb(III) treatments for Potamogeton crispus. Sb(V) was detected in the plants of Sb(III) treatments with different Sb(V)-total Sb vitro (Phragmites australis: 34 % and, Potamogeton crispus: 15 %), moreover, Sb(V) was also detected in the nutrient solution of Sb(III) treatments. Antimony exposure caused a reduction of the iron plaque formation, at the same time, the root aerenchyma formation was disrupted, and this phenomenon is more pronounced in the Sb(III) treatments. Moreover, the iron plaque has a higher sorption potential to Sb under Sb(III) exposure than that under Sb(V) exposure. The results can fill the gap for antinomy speciation in wetland plants and expand the current knowledge regarding the Sb translocation in wetland systems.

Strong plastic responses in aerenchyma formation in F1 hybrids of Imperata cylindrica under different soil moisture conditions.

Hybrids can express traits plastically, enabling them to occupy environments that differ from parental environments. However, there is insufficient evidence demonstrating how phenotypic plasticity in specific traits mediates hybrid performance. Two parental ecotypes of Imperata cylindrica produce F1 hybrids. The E-type in wet habitats has larger internal aerenchyma than the C-type in dry habitats. This study evaluated relationships between habitat utilisation, aerenchyma plasticity, and growth of I. cylindrica accessions. We hypothesize that plasticity in expressing parental traits explains hybrid establishment in habitats with various soil moisture conditions. Aerenchyma formation was examined in the leaf midribs, rhizomes and roots of two parental ecotypes and their F1 hybrids in their natural habitats. In common garden experiments, we examined plastic aerenchyma formation in leaf midribs, rhizomes and roots of natural and artificial F1 hybrids and parental ecotypes and quantified vegetative growth performance. In the natural habitats where soil moisture content varied widely, the F1 hybrids showed larger variation in aerenchyma formation in rhizomes than their parental ecotypes. In the common garden experiments, F1 hybrids showed high plasticity of aerenchyma formation in rhizomes, and their growth was similar to that of C-type and E-type under drained and flooded conditions, respectively. The results demonstrate that F1 hybrids of I. cylindrica exhibit plasticity in aerenchyma development in response to varying local soil moisture content. This characteristic allows the hybrids to thrive in diverse soil moisture conditions.

Rice receptor kinase FLR7 regulates rhizosphere oxygen levels and enriches the dominant Anaeromyxobacter that improves submergence tolerance in rice.

Oxygen is one of the determinants of root microbiome formation. However, whether plants regulate rhizosphere oxygen levels to affect microbiota composition and the underlying molecular mechanisms remain elusive. The receptor-like kinase (RLK) family member FERONIA modulates the growth-defense tradeoff in Arabidopsis. Here, we established that rice FERONIA-like RLK 7 (FLR7) controls rhizosphere oxygen levels by methylene blue staining, oxygen flux, and potential measurements. The formation of oxygen-transporting aerenchyma in roots is negatively regulated by FLR7. We further characterized the root microbiota of 11 FLR mutants including flr7 and wild-type Nipponbare (Nip) grown in the field by 16S ribosomal RNA gene profiling and demonstrated that the 11 FLRs are involved in regulating rice root microbiome formation. The most abundant anaerobic-dependent genus Anaeromyxobacter in the Nip root microbiota was less abundant in the root microbiota of all these mutants, and this contributed the most to the community differences between most mutants and Nip. Metagenomic sequencing revealed that flr7 increases aerobic respiration and decreases anaerobic respiration in the root microbiome. Finally, we showed that a representative Anaeromyxobacter strain improved submergence tolerance in rice via FLR7. Collectively, our findings indicate that FLR7 mediates changes in rhizosphere oxygen levels and enriches the beneficial dominant genus Anaeromyxobacter and may provide insights for developing plant flood prevention strategies via the use of environment-specific functional soil microorganisms.

In vitro rooting of Quercus robur, activated charcoal vs. exogenous auxin: a morphophysiological approach

In plant cultivation, morphophysiological status of the plantlets is crucial. We aimed to assess how activated charcoal (AC) and synthetic auxins, separately and in combination, affect the biochemistry, anatomy, and physiology of Quercus robur plantlets. Two concurrent experiments were conducted using indole-3-acetic acid (IAA) and indole-3-butyric acid (IBA) as exogenous auxins, with or without AC. Plantlets grown without exogenous auxins and AC displayed weak root development, reduced functionality, lower photosynthetic pigments, and elevated starch and free IAA content. Incorporating IAA or IBA into the medium triggered positive morphophysiological changes, such as aerenchyma formation, increased hydrogen peroxide, and reduced free IAA levels in the in vitro-produced clones. Plantlets cultured with 2 g L−1 AC exhibited higher biomass and more photosynthetic pigments. AC also enhanced the photosynthetic apparatus, as indicated by higher total performance index (PI(TOTAL)) values. Importantly, AC improved rooting success and overall morphophysiological condition, regardless of exogenous auxin presence. These findings provide novel insights into in vitro rooting modulation with AC and exogenous auxins, promising advancements in the growth and performance of Q. robur plantlets.

Defense strategies in Cenchrus biflorus, C. ciliaris, and C. orientalis to cope with aridity, salinity, and cold stress

Three Cenchrus species (C. biflorus, C. ciliaris, and C. orientalis) were collected from different ecological regions in the Punjab and Khyber Pakhtoonkhwa during July to September 2020 to evaluate tolerance to multiple abiotic stresses (aridity, salinity, and cold). Growth and biomass production was the maximum in C. biflorus, C. ciliaris, and C. orientalis under aridity stress. Aerenchyma formation and vascular tissue increased significantly in roots under aridity. In C. ciliaris, aerenchyma formation was recorded under cold stress. Root vascular tissue was higher under normal conditions (26.7%) and aridity (30.4%) stress in C. ciliaris. Stem parenchyma (29.1%) and vascular tissues (35.5%) showed an increase in C. biflorus under aridity, while mechanical tissue (33.6%) increased significantly under salinity stress. In C. biflorus and C. ciliaris, extensive sclerification was recorded in the stelar region under aridity stress. The stem radius of C. orientalis was greatest under salinity (27.0%) and cold (29.1%) stress, while parenchyma tissue was smaller (12.1%) under cold stress. Leaf thickness generally increased under abiotic stresses, and the maximum (43.0%) thickness was recorded in C. biflorus under aridity stress. Cenchrus biflorus, C. ciliaris, and C. orientalis showed strong association among morphological and leaf anatomical traits under aridity stress. Cenchrus orientalis showed high sclerification outside the vascular bundles of the leaf sheath. In saline conditions, vascular bundles were sclerified and enlarged. In and outside the vascular bundles of leaf blades, extensive sclerification was observed under cold stress conditions. Modifications in structural and functional traits were critical for the ecological success of Cenchrus species for survival in multiple environmental stresses.

Response to Waterlogging Stress in Wild and Domesticated Accessions of Timothy (Phleum pratense) and Its Relatives P. alpinum and P. nodosum

Timothy (Phleum pratense) is a cool-season perennial forage grass widely grown for silage and hay production in northern regions. Climate change scenarios predict an increase in extreme weather events with fluctuating periods of high rainfall, requiring new varieties adapted to waterlogging (WL). Wild accessions could serve as germplasm for breeding, and we evaluated the responses of 11 wild and 8 domesticated accessions of timothy, P. nodosum and P. alpinum from different locations in northern Europe. Young plants at tillering stage were exposed to WL for 21 days in a greenhouse, and responses in growth allocation and root anatomy were studied. All accessions produced adventitious roots and changed allocation of growth between shoot and root as a response to WL, but the magnitude of these responses varied among species and among accessions. P. pratense responded less in these traits in response to WL than the other two species. The ability to form aerenchyma in the root cortex in response to WL was found for all species and also varied among species and among accessions, with the highest induction in P. pratense. Interestingly, some accessions were able to maintain and even increase root growth, producing more leaves and tillers, while others showed a reduction in the root system. Shoot dry weight (SDW) was not significantly affected by WL, but some accessions showed different and significant responses in the rate of production of leaves and tillers. Overall correlations between SDW and aerenchyma and between SDW and adventitious root formation were found. This study identified two wild timothy accessions and one wild P. nodosum accession based on shoot and root system growth, aerenchyma formation and having a root anatomy considered to be favorable for WL tolerance. These accessions are interesting genetic resources and candidates for development of climate-resilient timothy varieties.

MORPHOANATOMICAL RESPONSES OF CLONAL COCOA GENOTYPES TO SOIL FLOODING

The effects of soil flooding on the anatomy of seven T. cacao clones (CP-49, CCN-10, PH-16, CP-06, CEPEC-2007, CEPEC-2008 and PS-1319), obtained by rooting medium of stem cuttings, aiming to elucidate the possible mechanisms of tolerance to anoxia, to subsidize the cultivation of these clones in hydromorphic soils or with drainage problems. The experiment was carried out under greenhouse conditions at UESC, Ilhéus, BA. The plants were submitted to two water regimes (with and without flooding) for a period of 45 days. The formation of lenticels at the base of the stem, at eight days of flooding, was a striking feature in the survival process of clonal genotypes. The clones from the flooded treatment showed more starch in relation to the control treatment. There was an enlargement of the intercellular spaces in the different organs of most of the plants of the evaluated clonal genotypes. Aerenchyma formation was noted in clones CP-49, CCN-10, PH-16, CP-06 and PS-1319. The non-flooded CP-49 clone presented a higher amount of phenolic compounds, while in the other clonal genotypes these compounds were present in greater amounts in the flooded treatment. The development of a greater amount of adventitious roots in the plants of clones CP-49 and CCN-10 demonstrated greater morphoanatomical plasticity of these clones in relation to the others, which had these alterations less pronounced and were more sensitive to substrate flooding. The plants of the clonal genotypes CEPEC-2008 and PS-1319 showed lower foliar plasticity in response to soil flooding, in relation to the other clones evaluated. Clones CCN-10 and CP-49 were the most tolerant to soil flooding, while clones CP-06 and CEPEC-2007 were considered moderately tolerant and clones CEPEC-2008 and PS-1319 were considered non-tolerant. Therefore, clones CCN-10 and CP-49 have the potential to be cultivated in hydromorphic soils or with drainage problems.

Transcriptome analysis reveals ZmERF055 contributes to waterlogging tolerance in sweetcorn

Waterlogging is a major disaster damaging crop production. However, most sweetcorn cultivars are not tolerant to waterlogging, which severely threatens their production. In order to understand the genetic mechanisms underlying waterlogging tolerance in sweetcorn, this study conducted a comprehensive investigation of sweetcorn waterlogging tolerance at the levels of physiology, biochemistry, and transcriptome in two sweetcorn CSSLs (chromosome segment substitution lines), D120 and D81. We found that D120 showed increased plant height, root length, root area, adventitious root numbers, antioxidant enzyme activities, and aerenchyma area ratio compared to D81. The transcriptome results showed that 2492 and 2351 differentially expressed genes (DEGs) were obtained at 4 h and 8 h of waterlogging treatment, respectively. Genes involved in reactive oxygen species (ROS) homeostasis, photosynthesis, and alcohol fermentation are sensitive in the waterlogging tolerant genotype D120, resulting in enhanced ROS scavenging ability, adventitious roots, and aerenchyma formation. Additionally, ethylene-, auxin-, and ABA-related genes exhibited different responses to waterlogging stress in sweetcorn. We integrated transcriptome and differential chromosomal fragments data and identified that ZmERF055 on chromosome 9 was directly involved in waterlogging stress. ZmERF055-overexpressing plants consistently exhibited significantly increased waterlogging tolerance and ROS homeostasis in Arabidopsis. These results offer a network of plant hormone signaling, ROS homeostasis, and energy metabolism co-modulating waterlogging tolerance in sweetcorn. Additionally, the findings support ZmERF055 as a potential ideal target gene in crop breeding to improve plant waterlogging tolerance.

The Developmental Mechanism of the Root System of Cultivated Terrestrial Watercress.

A well-developed root system is crucial for the rapid growth, asexual reproduction, and adaptation to the drought environments of the watercress. After analyzing the transcriptome of the watercress root system, we found that a high concentration of auxin is key to its adaptation to dry conditions. For the first time, we obtained DR5::EGFP watercress, which revealed the dynamic distribution of auxin in watercress root development under drought conditions. Via the application of naphthylphthalamic acid (NPA), 4-biphenylboronic acid (BBO), ethylene (ETH), abscisic acid (ABA), and other factors, we confirmed that auxin has a significant impact on the root development of watercress. Finally, we verified the role of auxin in root development using 35S::NoYUC8 watercress and showed that the synthesis of auxin in the root system mainly depends on the tryptophan, phenylalanine, and tyrosine amino acids (TAA) synthesis pathway. After the level of auxin increases, the root system of the watercress develops toward adaptation to dry environments. The formation of root aerenchyma disrupts the concentration gradient of auxin and is a key factor in the differentiation of lateral root primordia and H cells in watercress.

Unravelling the role of adventitious roots under priming-induced tolerance to waterlogging stress in wheat

Waterlogging is a significant environmental stressor that can have detrimental effects on crop yields. Waterlogging priming has emerged as a promising technique for enhancing plant waterlogging tolerance. However, the underlying mechanisms behind the regulation of root resistance, particularly adventitious roots (ARs), in wheat under waterlogging stress remain unclear. In this study, we subjected plants to waterlogging priming for two days at the two-leaf stage, followed by seven days of waterlogging stress after a ten-day recovery period to investigate the morphological and anatomical structure and physiological functions of ARs in wheat. Our results demonstrated that primed plants under waterlogging stress (PW) had increased numbers of ARs, improved gas exchange, and enhanced aerenchyma formation in ARs, leading to normal plant respiration when compared to non-primed plants under waterlogging stress treatment (CW). PW up-regulated the expression of cell wall remodeling genes (CEL, XET), reactive oxygen species (ROS) production-related gene (RBOH1), and ethylene biosynthesis-related genes (ACS2, ACS4) in ARs, and increased anaerobic respiratory enzyme activity, thus preserving the supply of soluble sugars in ARs and providing more materials and energy for adventitious root regeneration compared to CW. Overall, waterlogging priming improved the waterlogging tolerance of both above-ground and ARs in wheat, reducing the severity of damage caused by waterlogging. Our findings provide new insights into the mechanisms underlying waterlogging priming and suggest that it may be a promising strategy for mitigating the adverse effects of waterlogging on crop productivity.