Calcium Oxalate Formation Research Articles

Analysis of fungal deterioration phenomena in the first Portuguese King tomb using a multi-analytical approach

During the ongoing characterization of limestone biodeterioration in the UNESCO World Heritage site of “University of Coimbra – Alta and Sofia” (Coimbra, Portugal), it was brought to our attention that the limestone relieves adorning the tomb of D. Afonso I (First Portuguese King), displayed several signs of distinctive biodeterioration patterns. According to the ICOMOS Illustrated glossary on stone deterioration patterns, these could be characterized as visual mould proliferation, presence of black crusts, stone erosion and disintegration. Due to the invaluable nature of this monument, a multi-disciplinary approach (biological and analytical) to fully characterize these phenomena was applied. The results obtained allowed the characterization of the fungal diversity colonizing this monument, as well as the identification of various deterioration products. The results highlighted that the detected indoor black crusts displayed various characteristics from polluted environments, although lacking the typical association with gypsum. The black crusts were also characterized by the presence of lead oxides, damaging salts and carbonaceous particles. In addition, it could be verified that the erosion phenomena found are a result from fungal mediated calcium carbonate dissolution and calcium oxalate formation. The establishment of different fungal populations coupled with the deposition of environmental particles contributed to the development of the distinct phenomena detected through differential biodeterioration mechanisms.

In Vivo Renal Tubule pH in Stone-Forming Human Kidneys.

Introduction: There is evidence that patients with a history of ileostomies, who produce acidic urine and form uric acid or calcium oxalate stones, may plug some collecting ducts with calcium phosphate (CaP) and urate crystals. This is a paradoxical finding as such minerals should not form at an acid pH. One possible explanation is the presence of acidification defects due to focal damage to inner medullary collecting duct and Bellini duct (BD) cells. We sought to further investigate this hypothesis through direct measurement of ductal pH in dilated BDs in patients with ileostomies undergoing percutaneous nephrolithotomy (PCNL) for stone removal. Methods: After obtaining institutional review board approval, we used a fiber-optic pH microsensor with a 140-μm-diameter tip to measure intraluminal pH from the bladder, saline irrigant, and dilated BDs of patients undergoing PCNL. Results: Measurements were taken from three patients meeting inclusion criteria. Measured pH of bladder urine ranged from 4.97 to 5.58 and pH of saline irrigant used during surgery ranged from 5.17 to 5.75. BD measurements were achieved in 11 different BDs. Mean intraductal BD pH was more than 1 unit higher than bulk urine (6.43 ± 0.22 vs 5.31 ± 0.22, p < 0.01). Conclusions: This is the first evidence for focal acidification defects within injured/dilated BDs of human kidneys producing highly acidic bulk phase urine. These results may help explain the paradoxical finding of CaP and urate plugs in dilated ducts of patients with stone-forming diseases characterized by highly acidic urine.

In situ precipitation for the surface treatment and repair of cement-based materials

A calcium oxalate-mineralized film was synthesized in situ on the surface of Portland-cement-based material, aimed at protecting the concrete against water penetration and to facilitate crack repair. Microanalysis results show that the homogeneously dense film was highly compatible with the cement paste, and its thickness increased with the increasing oxalic acid concentration. Additionally, the results demonstrate the film's high efficacy in water penetration of cement-based materials due to the improvement in its hydrophobicity. In addition, the formed calcium oxalate monohydrate can repair cracks in concrete. This would be a simple and effective method to improve durability of concrete structures.

Study on the effect and mechanism of total flavonoids from Mosla for rats with calcium oxalate stone in kidney

Objective To explore the effect and mechanism of total flavonoids on calcium oxalate stones in SD male rats, and to provide ideas for the prevention and treatment of calcium oxalate stones. Methods The model of 1% ammonium chloride+ 1% ethylene glycol was used.The patients were treated with placebo, low dose of total flavones and high dose of total flavones.The content and concentration of oxalic acid in rats' 24-hour urine were measured.The contents of calcium and magnesium in urine were determined, and the levels of blood urea, creatinine and serum calcium were determined, HE staining was performed on the kidney sections of rats, and the pathological changes and calcium oxalate crystals were observed and graded under 100-fold microscope. Results The contents of calcium ions in renal tissues, 24-hour urinary calcium ions, calcium oxalate crystals in renal tissues and renal tubular dilatation in rats treated with different doses of flavonoids from comfrey's flower were significantly lower than those in the model group (P<0.05). Conclusions The total flavonoids could prevent the formation of calcium oxalate in kidney of SD male rats. Key words: Urinary Calculi; Calcium Oxalate; Medicago sativa; FLAVONE

Autophagy-endoplasmic reticulum stress inhibition mechanism of superoxide dismutase in the formation of calcium oxalate kidney stones

BackgroundNephrolithiasis is a common disease in urology, and its pathogenesis is associated with various factors. Recent studies have shown that reactive oxygen species (ROS) can promote autophagy in the formation of kidney stones and exacerbate kidney injury. Endoplasmic reticulum stress (ERS), a key factor in regulating intracellular environmental homeostasis, is also directly related to ROS production. Therefore, this study aimed to investigate the regulatory effect of superoxide dismutase (SOD) on autophagy-ERS response during the formation of calcium oxalate (CaOx) kidney stones in rats. MethodsThirty-two rats were randomly divided into four groups (n = 8): normal control group, stone model group, stone model with atorvastatin group, and stone model with diethyldithiocarbamic acid (DETC) group. Rat models of CaOx kidney stones were established by intragastric administration of 0.75 % ethylene glycol for 4 weeks. Kidney/body weight was used to assess renal enlargement. Renal function was assessed by measuring serum SOD, creatinine (CRE), and blood urea nitrogen (BUN) levels. The expression of autophagy-related proteins LC3B and BECN1 was detected through immunohistochemical staining. Meanwhile, the expression of autophagy-ERS response-related proteins LC3B, BECN1, p62, GRP78, and CHOP was detected using Western blot and RT-PCR. Renal tubular injury markers neutrophil gelatinase-associated lipocalin (NGAL) and kidney injury molecule 1 (Kim-1) were determined through enzyme-linked immunosorbent assay. The apoptosis of renal tubular cells and the expression of their signature proteins cleaved Caspase-3, Bax and Bcl-2 were detected using Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling and Western blot assays, respectively. Crystal deposition and histological tissue injury were assessed through Von Kossa staining. ResultsCompared with the control group, the stone model group showed higher kidney/body weight ratio; evidently higher expression of autophagy-ERS response- and apoptosis-related proteins LC3B, BECN1, GRP78, CHOP, Bax and cleaved Caspase-3; and lower levels of p62, bcl-2 protein, and SOD. The stone model group also showed higher levels of apoptosis, serum CRE, BUN, NGAL, and Kim-1, as well as considerably greater crystal deposition and renal injury, than the control group. Atorvastatin reduced the levels of autophagy-ERS response, kidney injury, and crystal deposition, but they were increased by DETC. ConclusionEnhanced SOD activity can protect the kidneys by reducing autophagy-ERS response and CaOx kidney stone formation. Atorvastatin may be a new option for the prevention and treatment of nephrolithiasis.

Research progress on the bioweathering and controlling of stone cultural relics

The bioweathering of stone cultural relics is a ubiquitous problem. Weathering prevention is an escalating challenge under the increasing global climate and environmental changes. Here, the mechanisms of lichen-microorganism mediated weathering of stone materials and their relationships with climatic and environmental factors were reviewed. The biological protection of lichens and the evaluation of the efficacy of biocides in lichen-control were discussed. The potential research directions in this field were proposed. Research on lichen-rock interfaces suggested that biological weathe-ring could be mainly attributed to physical and chemical weathering which represented by mycelium penetration and calcium oxalate formation. Bioweathering of outdoor stone cultural relics is closely related with the whole ecosystem encompassing factors, such as stone matrix, surrounding environment, and climate factors. Lichens have both biological weathering and protection effects on stone heritage. For the restoration of bioweathered stone cultural relics, environmental conditions for pre-servation of stone cultural relics should be improved step by step. The related industry regulations and national standards for evaluating biological weathering and control efficiency should be established to promote the efficient development of scientific protection.

Calcium Oxalates in Lichens on Surface of Apatite-Nepheline Ore (Kola Peninsula, Russia)

The present work contributes to the essential questions on calcium oxalate formation under the influence of lithobiont community organisms. We have discovered calcium oxalates in lichen thalli on surfaces of apatite-nepheline rocks of southeastern and southwestern titanite-apatite ore fields of the Khibiny peralkaline massif (Kola Peninsula, NW Russia) for the first time; investigated biofilm calcium oxalates with different methods (X-ray powder diffraction, scanning electron microscopy, and EDX analysis) and discussed morphogenetic patterns of its formation using results of model experiments. The influence of inorganic and organic components of the crystallization medium on the phase composition and morphology of oxalates has been analyzed. It was shown that, among the complex of factors controlling the patterns of biogenic oxalate formation, one of the main roles belongs to the metabolic activity of the lithobiont community organisms, which differs significantly from the activity of its individuals.

Environmental fungi and bacteria facilitate lecithin decomposition and the transformation of phosphorus to apatite

Organophosphorus compounds (OP) are stable P source in nature, and can increase eutrophication risk in waterbodies. Lecithin was the most difficult OP to be broken down. In this study, two typical phosphate-solubilizing microorganisms, Aspergillus niger and Acinetobacter sp., were applied to evaluate their ability to decompose both inorganic phosphates and lecithin. A. niger and Acinetobacter sp. could solubilize calcium phosphates by secreting various organic acids, e.g., oxalic and formic acids. The fungus, A. niger, shows significantly higher ability of solubilizing these inorganic phosphates than Acinetobacter sp., primarily due to its secretion of abundant oxalic acid. However, the bacterium, Acinetobacter sp., could secrete more acid phosphatase than A. niger for lecithin decomposition, i.e., 9300 vs. 8500 μmol L−1 h−1. Moreover, after addition of CaCl2, the released P from lecithin was transformed to stable chlorapatite in the medium. To the contrast, Ca cations inclined to form calcium oxalate (rather than stable phosphate mineral) after the incubation of A. niger, as it induced relatively acidic environment after breaking down lecithin. Therefore, this work sheds light on the bright future of applying bacteria and Ca cations in OP pollutant management.

Genome Sequence of Oxalobacter formigenes Strain SSYG-15.

Colonization of the intestine with Oxalobacter formigenes reduces urinary oxalate excretion and lowers the risk of forming calcium oxalate kidney stones. Here, we report the genome sequence of Oxalobacter formigenes SSYG-15, a strain isolated from a stool sample from a healthy Chinese boy.

Papillary Pathology in Calcium Oxalate Stone Formers Who Do and Do Not Form Their Stones on Randall’s Plaque

Background and Hypothesis: Nephrolithiasis currently affects about one-in-eleven people with a recurrence in up to half of those individuals. Formation of calcium oxalate (CaOx) stone is most common. Some CaOx stones are known to form on Randall’s plaque, which is a calcification of the renal papilla, and this kind of stone can be identified by morphology. We divided CaOx stone formers into two groups: Randall’s plaque (RP) stone formers (RPSF) and non-Randall’s plaque stone formers (NRPSF). We hypothesized that renal papillary pathologies would be different between these two groups of stone formers.&#x0D; Experimental Design or Project Methods: Surgical videos were assessed for papillary pathology using a semiquantitative grading system to measure papillary appearance in terms of ductal plugging and dilation, tissue surface pitting, loss of papillary contour, and RP. The second measure computed the papillary percent surface area of Randall’s plaque and ductal plugging using still images of the papilla. The scoring and quantitative measures of the papillae were compared between the two patient groups. All work was done in a manner blinded to the patient group.&#x0D; Results: Two-tailed t-test showed that RPSF group had higher scores of pitting and RP and lower scores for plugging when compared to the NRPSF group. Similarly, the quantitative data showed that RPSF group had a lower percentage of plugging surface area and higher percentage of RP surface area.&#x0D; Conclusion and Potential Impact: These data show that persons forming their CaOx stones primarily on RP have a papillary pathology that differs from CaOx stone formers who make their stones by other mechanisms. RPSF have more RP and less ductal plugging. Since the underlying pathologies existing in RP stone formation are different from other CaOx stone formers, it is possible that certain treatments could be especially effective for this group, and thus these results suggest that clinical trials that separate out this group of CaOx stone formers are warranted.

Aqueous Cannabis Extract Prevents Ethylene Glycol-induced Renal Calcium Crystallization

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Infection scene investigation of shot holes: Incomplete but neutral abscission of brown spots on oriental cherry leaves

AbstractShot holes on oriental cherry (Prunus serrulata var. spontanea) leaves were investigated to evaluate their role in the elimination of pathogens using analytical electron microscopy. Small brown spots caused by Mycosphaerella cerasella appeared on the leaf surface and developed into shot holes that were approximately 1–5 mm in diameter. Field emission scanning electron microscopy revealed clusters of fungal conidiophores and hyphal growth on the leaf surface around the shot holes. The fungal structures were mostly located within a radius of 500 μm from the shot holes and confined to the epidermal sector separated by veins. X‐ray microanalysis revealed distinct calcium ring patterns encircling the shot holes. The abscised surfaces consisted of suberized plant cells colonized with filamentous fungi and yeasts. Embedded in the mesophyll tissue, druse crystals were co‐localized with calcium and oxygen. Despite the fungal presence around the shot holes, no further expansion of the shot holes was observed on the leaf surface. These results suggest that shot holes may represent an incomplete but neutral abscission of infection loci in the presence of necrotrophic fungal pathogens. This microscopy study provides insight into the formation and roles of calcium oxalate in plants under pathological conditions.

Activities of Ca2+-related ion channels during the formation of kidney stones in an infection-induced urolithiasis rat model.

Bacterial infection has long been recognized to contribute to struvite urinary stone deposition; however, its contribution to the development of chronic kidney stones has not been extensively investigated. In the present study, we hypothesized another possible method of bacteria contributing to the formation of calcium oxalate (CaOx) that accounts for the biggest part of the kidney stone. Bacteria may play important roles by influencing renal Ca2+-related ion channel activities, resulting in chronic inflammation of the kidney along with rapid aggregation of stones. We examined the correlation among infection-promoted CaOx kidney stones and alterations in Ca2+-related ion channels in an animal model with experimentally induced Proteus mirabilis and foreign body infection. After the bladder was infected for 7 days, the data demonstrated that stones were presented and induced severe renal tubular breakage as well as altered levels of monocyte chemoattractant protein-1, cyclooxygenase-2, osteopontin, and transient receptor potential vanilloid member 5 expression, reflecting responses of kidney ion channels. Monocyte chemoattractant protein-1, osteopontin, and transient receptor potential vanilloid member 5 expression was significantly downregulated over time, indicating the chronic inflammation phase of the kidney and accelerated aggregation of CaOx crystals, respectively, whereas cyclooxygenase-2 exhibited no differences. These results indicated that bacterial infection is considerably correlated with an alteration in renal Ca2+-related ion channels and might support specific and targeted Ca2+-related ion channel-based therapeutics for urolithiasis and related inflammatory renal damage.

A New Route for Indirect Mineralization of Carbon Dioxide\u2013Sodium Oxalate as a Detergent Builder

Here, we bridge the gap between carbon mineralization and laundry detergent builder with sodium oxalate. Daily laundry can help mineralize carbon dioxide. First, we screen an environment-friendly process to produce sodium oxalate, using CO2 as a raw material. Then, we evaluate the properties of sodium oxalate as a detergent builder and prove the formation of calcium oxalate under laundry conditions. Our data suggest that sodium oxalate has excellent calcium-removing properties. Detergents based on sodium oxalate have good detergency. Furthermore, solid calcium oxalates (calcium oxalate monohydrate or calcium oxalate dihydrate, which has good stability in water and thermal stability), is obtained from washing waters. These results demonstrate the possibility of using sodium oxalate as detergent builder. The whole process can transform the greenhouse gas CO2 into commodity chemicals and can mineralize carbon.

Transcriptome analysis of Medicago lupulina seedlings leaves treated by high calcium provides insights into calcium oxalate formation

Calcium oxalate (CaOx) is a common biomineral found in the plant kingdom. Crystals of CaOx occur in different plant tissues, such as leaves and stems. However, little is known about the biosynthesis of CaOx in oxalate-accumulating plants. Moreover, the literature on genes related to CaOx formation under high-calcium environment is scarce. In the present study, the physiological parameters and the transcript profiles of Medicago lupulina leaves treated with 0.1 and 25 mM Ca2+ were analyzed to study the genes involved in the biosynthesis of CaOx. We demonstrated that exposure to high external calcium concentration induced H2O2 production, ascorbic acid degradation, and CaOx accumulation in M. lupulina leaves. Moreover, we identified 1715 differentially expressed genes (DEGs) (1322 up-regulated and 393 down-regulated genes) in leaves treated with 25 mM Ca2+ compared with the leaves treated with 0.1 mM Ca2+. We further demonstrated the involvement of DEGs in oxalic acid production, calcium transport, and calcium buffering. These results revealed that a high calcium promoted oxalic acid biosynthesis by inducing the expression of NADPH oxidase and ascorbate oxidase genes. In addition, several genes encoding cyclic nucleotide-gated channel, Ca2+-ATPase, H+/Ca2+ exchangers, and calcium-binding proteins were found to be differentially expressed and involved in calcium transport and calcium buffering. Our transcriptome analyses provide a comprehensive insight into the biosynthesis of CaOx in oxalate-accumulating plants.

The Potential Capacity of Ten Plant Extracts on Calcium Oxalate Formation In -Vitro Study

The Potential Capacity of Ten Plant Extracts on Calcium Oxalate Formation In -Vitro Study

Gallic Acid-Chitosan Conjugate Inhibits the Formation of Calcium Oxalate Crystals.

It has recently been shown that chitosan (Chit) induces the formation of calcium oxalate (CaOx) crystals, which are mainly responsible for the appearance of kidney stones, and this might limit the use of Chit in vivo. Here, Chit was conjugated with gallic acid (Chit-Gal) to decrease the formation of CaOx crystal. This conjugation was confirmed by FTIR and NMR analyses. Chit-Gal contains 10.2 ± 1.5 mg GA per g of Chit. Compared to the control group, Chit increased the number of crystals by six-fold, mainly in the number of monohydrated CaOx crystals, which are the most harmful CaOx crystals. In addition, Chit increased the zeta potential (ζ) of CaOx crystals by three-fold, indicating that Chit was associated with the crystals. These alterations were abolished when Chit-gal was used in these tests. As oxidative stress is related to renal calculus formation, Chit and Chit-Gal were also evaluated as antioxidants using total antioxidant Capacity (TAC), reducing power, ferrous chelation, and copper chelation tests. Chit-gal was more efficient antioxidant agent in TAC (2 times), in ferrous chelation (90 times), and in reducing Power (5 times) than Chit. Overall, Chit-gal has higher antioxidant activity than Chit, does not induce the formation of CaOx crystals. Thus, Chit-Gal has potential to be used as a chit substitute.

Dissolution of phosphate from pig manure ash using organic and mineral acids

Phosphate fertilizer production from renewable resources like sewage sludge and livestock waste helps to ensure future phosphate supply, while also solving waste management issues. After combustion, the resulting ash contains heavy metals at a restrictively high level, preventing its direct use as fertilizer. In this study, several organic acids and sulfuric acid are used to dissolve phosphates from ash. Acetic, maleic and citric acids perform as expected, but oxalic acid outperforms all, including sulfuric acid. All phosphate is dissolved at pH 4 when using oxalic acid, while pH 2 is needed in the case of sulfuric acid. Furthermore, less of the heavy metals end up in the resulting solution when using oxalic acid. Nearly all calcium is retrieved in the solid residue when oxalic acid is used, pointing towards formation of calcium oxalate, not chelating complexes as often assumed, as the cause of oxalic acid outperforming the other acids in this study.

Vibrational spectroscopy and SEM-EDX analysis of wall painted surfaces, Orchha Fort, India

Any alteration of pigments due to environmental degradation leads to the disfigurement of the depictions and change in hue and saturation that artists intended to represent through paintings. An analytical characterisation of pigments of early 16th century Orchha fort has been attempted through non-invasive micro-Raman and results corroborated with FTIR and SEM-EDX. The analysis revealed the formation of calcium oxalate on painted surfaces due to biological colonisation that led to deterioration and sometimes masking of pigment layer. Analysis demonstrated the transformation of calcium sulphate dihydrate to low-temperature anhydrite in exposed white painted areas made from mixtures of gypsum, calcite and lead carbonate. The black colour on paintings is due to biological colonisation on the red outer surface layer and not by the use of black pigment. Lapis lazuli for blue, copper based pigment for green, yellow ochre for yellow was found used in decorations.

Fecal incontinence, anal skin irritation, and metabolic concerns associated with pelvic pouches

Mechanical and inflammatory complications of pelvic pouch surgery have been well described but there has been limited recognition of problems such as fecal incontinence, anal skin irritation and metabolic changes that may develop after surgery. Reported rates of daytime and nighttime fecal incontinence rates are 29% and 47% respectively. We discuss strategies for managing fecal incontinence and associated anal skin irritation that can develop. Metabolic consequences of pelvic pouch surgery are also increasingly being recognized. Patients with IPAA who are doing well with no evidence of pouch inflammation have low rates of nutrient deficiencies but should be monitored for vitamin B12, vitamin D and zinc deficiencies. In contrast, patients with IPAA who develop pouchitis, diarrhea, and/or rectal bleeding are more susceptible to nutrient deficiencies and should have a broader assessment of nutrient status. In additions, there appears to be an increased risk of bone loss among patients with IPAA and thus these patients should undergo appropriate risk screening and testing. Finally, patients with IPAA have physiologic changes that predispose to formation of calcium oxalate and uric acid renal stones.