Total Length Research Articles

A high-density genetic linkage map and QTL identification for growth traits in dusky kob (Argyrosomus japonicus)

High-density genetic linkage maps provide a foundational genomic resource for quantitative trait locus (QTL) mapping, candidate gene localisation, and comparative genomic analysis. Data from such studies, in turn, can be incorporated into marker or genomics assisted selective breeding strategies for increased efficiency of aquaculture production. This study aimed to construct the first high-density genetic linkage map for dusky kob (Argyrosomus japonicus) a commercially important marine finfish in Asia, Australia, and South Africa. Using 2b-restriction site-associated DNA (2b-RAD) sequencing for genome-wide single nucleotide polymorphism (SNP) genotyping, in three full-sib F1 families (Family 1, n = 69 offspring; Family 2, n = 73 offspring; and Family 3, n = 70 offspring), led to the discovery and genotyping of 22,789 SNPs. Among these, 3992 quality filtered and informative SNPs were mapped to 24 linkage groups (LGs), aligning with the species' proposed haploid chromosome number. The total integrated genetic map spanned a length of 2550 cM with an average marker spacing of 0.68 cM, achieving a genome coverage of 98.61%. Male and female specific maps highlighted differential map lengths and recombination rates between the sexes, with the female map slightly longer and a lower recombination frequency than for the male. QTL analysis for growth-related traits, weight (W), standard length (sL), and Fulton's condition factor (K), identified a total of 25 QTLs of which five QTLs were found to be consistently shared across the traits. Collectively, these shared QTLs explained a substantial proportion of the phenotypic variance, accounting for between 9.30 and 19.30% of the observed variation, suggesting potential major genes for growth. These QTL regions led to the discovery of 65 potential candidate genes, including 11 genes that were specifically located within the shared QTLs. These genes were linked to essential biological processes, including metabolism, immunity, stress response, development, and vascular function. The establishment of this high-density genetic linkage map represents an important genomic resource for comprehending the genetic determinants of economically important traits in A. japonicus, with implications for advancing and optimising ongoing marker-assisted selection (MAS) initiatives in the species.

Morphometerical observations of intestine in Japanese quail

The present study was conducted on duodenum, jejunum, ileum, caecum and colorectum of Japanease quail. The weight of the duodenum on day 7th and 42nd was 0.47±0.05 g and 1.45±0.09 g, respectively. The length of the duodenum was found to be 8.60±0.36 cm and 14.13±0.55 cm on the same observation days. The weight and length of the jejunum ranged from 0.47±0.07 g to 1.62±0.19 g and 11.99±0.33 cm to 23.70±1.10 cm on day 7th and 42nd old birds, respectively. The values for the weight and length of the ileum were 0.30±0.03 g to 1.32±0.12 g and 10.21±0.80 cm to 20.88±1.61 cm, respectively at 7th and 42nd old birds of age. The weight and length of caecum were ranged from 0.22±0.03 g to 1.13±0.18 g and 4.13±0.07 cm to 7.69±0.30 cm. The values for the weight and length of the colorectum were 0.10±0.01 g to 0.51±0.05 g and 3.36±0.16 cm to 6.93±0.33 cm. The total length and weight of the five constituents, i.e. duodenum, jejunum, ileum, caecum and colorectum together formed the entire weight and length of the intestine which ranged from 1.55±0.08 g to 6.02±0.43 g and 37.97±1.04 to 73.34±1.61 cm, respectively at 7th and 42nd old birds of age.

Density affects rearing performance of juvenile landlocked fall Chinook Salmon

AbstractObjectiveDensity‐related information for landlocked fall Chinook Salmon Oncorhynchus tshawytscha shortly after first feeding is poorly understood. This study was undertaken to determine the effects of a range of rearing densities (low, intermediate, and high) on rearing performance and survival of newly feed‐trained juvenile landlocked fall Chinook Salmon.MethodsThe fish were reared for 66 days in 1.8‐m (diameter) tanks with approximate volume of 2036 L at one of three loadings of approximately 2500, 5000, or 10,000 fish/tank.ResultThe initial and final densities for each of the three loadings were 0.73 and 8.93, 1.45 and 16.41, and 2.90 and 26.86 kg/m3, respectively. At the end of the study, the specific growth rates were significantly lower, total lengths were significantly shorter, and feed conversion ratios were significantly greater in the fish from the highest‐density treatment relative to the fish in the other treatments. Percentage of weight gain, final weights, and condition factor were significantly reduced in fish from the highest‐density treatment relative those at the lowest density. There were no significant differences in any growth metrics between fish that were reared at the lowest and intermediate densities. The intermediate density (5000 fish/tank) produced intermediate results that did not significantly differ from either the highest or lowest densities. Mortality was not significantly different among the density treatments.ConclusionAn initial loading of 5000 fish in 1.8‐m (diameter) circular tanks, corresponding to initial and final densities of 1.45 and 16.41 kg/m3, respectively, is recommended to minimize the detrimental effects of density on newly feeding Chinook Salmon while maximizing their production in often limited hatchery space.

Rhizosphere Ventilation Effects on Root Development and Bacterial Diversity of Peanut in Compacted Soil

Soil compaction is one of the crucial factors that restrains the root respiration, energy metabolism and growth of peanut (Arachis hypogaea L.) due to hypoxia, which can be alleviated by ventilation. We therefore carried out a pot experiment with three treatments: no ventilation control (CK), (2) ventilation volumes at 1.2 (T1), and 1.5 (T2) times of the standard ventilation volume (2.02 L/pot). Compared to no-ventilation in compacted soil, ventilation T1 significantly increased total root length, root surface area, root volume and tips at the peanut anthesis stage (62 days after sowing), while T2 showed a negative impact on the above-mentioned root morphological characteristics. At the podding stage (S2, 95 days after sowing), both ventilation treatments improved root morphology, especially under T1. Compared to CK, both ventilation T1 and T2 decreased the activities of enzymes involving the anaerobic respiration, including root lactate dehydrogenase, pyruvate decarboxylase and alcohol dehydrogenase. The activities of antioxidant enzymes of root superoxide dismutase, peroxidase and catalase also decreased at S1, while superoxide dismutase and peroxidase significantly increased under T1 at S2. The ventilation of compacted soil changed soil nitrogen-fixing bacterial communities, with highest bacterial alpha diversity indices under T1. The Pearson correlation analyses indicated a positive relationship between the relative abundance of Bradyrhizobiaceae and root activity, and between unclassified_family of Rhizobiales and the root surface area, while Enterobacteriaceae had a negative impact on the root nodule number. The Pearson correlation test showed that the root surface, tips and activity positively correlated with root superoxide dismutase and peroxidase activities. These results demonstrate that soil ventilation could enhance plant root growth, the diversity and function of soil nitrogen-fixing bacterial communities. The generated results from this present study could serve as important evidence in alleviating soil hypoxia caused by compaction.

Genetic linkage map construction and QTL analysis for plant height in proso millet (Panicum miliaceum L.).

A genetic linkage map representing proso millet genome was constructed with SSR markers, and a major QTL corresponding to plant height was mapped on chromosome 14 of this map. Proso millet (Panicum miliaceum L.) has the lowest water requirements of all cultivated cereal crops. However, the lack of a genetic map and the paucity of genomic resources for this species have limited the utility of proso millet for detailed genetic studies and hampered genetic improvement programs. In this study, 97,317 simple sequence repeat (SSR) markers were developed based on the genome sequence of the proso millet landrace Longmi 4. Using some of these markers in conjunction with previously identified SSRs, an SSR-based linkage map for proso millet was successfully constructed using a large mapping population (316 F2 offspring). In total, 186 SSR markers were assigned to 18 linkage groups corresponding to the haploid chromosomes. The constructed map had a total length of 3033.42 centimorgan (cM) covering 78.17% of the assembled reference genome. The length of the 18 linkage groups ranged from 88.89cM (Chr. 15) to 274.82cM (Chr. 16), with an average size of 168.17cM. To our knowledge, this is the first genetic linkage map for proso millet based on SSR markers. Plant height is one of the most important traits in crop improvement. A major QTL was repeatedly detected in different environments, explaining 8.70-24.50% of the plant height variations. A candidate gene affecting auxin biosynthesis and transport, and ROS homeostasis regulation was predicted. Thus, the linkage map and QTL analysis provided herein will promote the development of gene mining and molecular breeding in proso millet.

A new species of mud snake (Squamata: Homalopsidae: Myrrophis) from southern Vietnam

Abstract Homalopsid snakes of the genus Myrrophis include only two species distributed in southern China and northern Vietnam. Here, we describe a third species from southern Vietnam based on morphological data and nucleotide sequences from the mitochondrial gene cyt b. Myrrophis dakkrongensissp. nov. is diagnosed by the following morphological characters: Medium-sized mud snake (largest total length 452 mm); internasal single and distinctly separated from loreals; dorsal scales smooth, in 23 rows at midbody, reduced to 19 or 20 rows before vent; ventrals 133–138; subcaudals 34–42, paired; cloacal plate divided; supralabials 8, fourth entering orbit; second pair of chin-shields small and oblique; maxillary teeth 17 or 18; gland-like tubercles present in the cloacal region; hemipenis short, forked and spinose, reaching 7th subcaudal; dorsum dark brown to black; and a white or yellow to orange lateroventral stripe present. The new species differs from its congeners by an uncorrected p distance in cyt b sequences of at least 10.5%.

Characterization of the complete chloroplast genome of Wolffia arrhiza and comparative genomic analysis with relative Wolffia species

Lemnoideae, commonly referred to as the duckweed, are aquatic plants found worldwide. Wolffia species are known for their extreme reduction in size and complexity, lacking both roots and leaves, and they hold the distinction of being the smallest plants among angiosperms. Interestingly, it belongs to the Araceae family, despite its apparent morphological differences from land plants in the same family. Traditional morphological methods have limitations in classifying these plants, making molecular-level information essential. The chloroplast genome of Wolffia arrhiza is revealed that a total length of 169,602 bp and a total GC content of 35.78%. It follows the typical quadripartite structure, which includes a large single copy (LSC, 92,172 bp) region, a small single copy (SSC, 13,686 bp) region, and a pair of inverted repeat (IR, 31,872 bp each) regions. There are 131 genes characterized, comprising 86 Protein-Coding Genes, 37 Transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Moreover, 48 simple sequence repeats and 32 long repeat sequences were detected. Comparative analysis between W. arrhiza and six other Lemnoideae species identified 12 hotspots of high nucleotide diversity. In addition, a phylogenetic analysis was performed using 14 species belonging to the Araceae family and one external species as an outgroup. This analysis unveiled W. arrhiza and Wolffia globosa as closely related sister species. Therefore, this research has revealed the complete chloroplast genome data of W. arrhiza, offering a more detailed understanding of its evolutionary position and phylogenetic categorization within the Lemnoideae subfamily.

Root Architectural Adaptations to Phosphorus Deficiency: Unraveling Genotypic Variability in Wheat Seedlings

Understanding the changes in the root system architecture of bread wheat under phosphorus (P)-limited conditions is critical for identifying specific traits contributing to improved P uptake. Phenotypic variability in root, biomass, and P index-related traits among 204 diverse wheat genotypes at the seedling stage was examined under low and optimum P treatments. Strong genotypic and phenotypic associations between P utilization efficiency (PUtE) and total root volume, dry weight of root and shoot, total P uptake, and total plant biomass were observed under optimum P. Under low P, strong positive correlations between PUtE and total root length, total root volume, total surface area, and total biomass were observed, while it was negatively correlated with average diameter. These traits exhibited medium to high heritability. Under low P, average root diameter, primary root length, root mass ratio, total root tips, and surface area showed high Shannon–Weaver diversity index (H’) values (>0.79). The agglomerative hierarchical clustering analysis grouped the genotypes into four distinct clusters. The best performing genotypes in Clusters I and II indicated their strong relationship with P use efficiency due to higher percent increases in total root length, total surface area, total root volume, total root tips, total biomass, P efficiency ratio, specific root length, and PUtE under low P as compared to optimum P conditions. The present study identified specific root system architectural traits and P use-efficient genotypes (SHANGHAI, Pavon F76, BWL 5233, SONALIKA, KHARCHIA LOCAL, WH 102, BWL 4425, HD 2888.2, CBW 12, MN75136/PGO, KRL 19, and WH 1022) associated with efficient P uptake and utilization. These identified genotypes and traits may be useful in wheat breeding programs to develop P-efficient varieties with better adaptations for sustainable agriculture.

Surgical reconstruction of medial eyelid defects using margin transposition, tarsal graft, and periosteal strip

ABSTRACT Purpose Surgical reconstruction of medially located lower eyelid defects can be challenging. The Hughes procedure, considered the standard for reconstruction in such cases, often falls short in terms of cosmetic outcomes. An alternative approach that combines medial transposition with a tarsal graft and periosteal strip has shown promise. Here, we aim to demonstrate the cosmetic advantages of medial transposition of a preserved temporal lower eyelid over other techniques. Method We conducted a retrospective study involving seven well-documented patients who underwent the procedure described below. The study was approved by the University’s Ethics Committee. Results All patients were followed up for one year. Lower eyelid defects spanned 50–80% of their total length, situated in the central third of the eyelid or the central to medial portion. Postoperative complications were minimal, with all patients exhibiting good cosmetic, functional, and anatomical outcomes at follow-up. Conclusion The absence of eyelashes is well tolerated if it is lateral, but when the defect is medial, medial transposition could be a good alternative to the familiar Hughes surgical intervention.

Determination of Sex of an Individual by Frontal Sinus Using Multidetector Computed Tomography Scan: A Retrospective Forensic Study

Abstract Objectives An important aspect of forensic investigation is determining the sex of an unidentified person. The frontal sinus is unique and remains intact, thus making it suitable for forensic analysis. The main objective of this study is to determine the sex of an individual by frontal sinus using a multidetector computed tomography scan. Materials and Methods A total of 100 patients (50 males and 50 females) were included in the study, and different parameters of the frontal sinus for both sides were analyzed, that is height, width, depth, and total length. Statistical Analysis Descriptive statistics of all the variables were computed and compared. SPSS version 16 was used to perform the Mann–Whitney U test, binary logistic regression, and receiver operating characteristic (ROC) curve analysis on the acquired data. Results The result suggested that males have higher mean values than females, with the left frontal sinus height being the only variable to be statistically significant (p < 0.05). Based on the ROC curve analysis, the optimum cutoff value was 0.489, which means if the predicted probability value was less than 0.489, the individual was considered a male; and if the predicted probability value was ≥0.489, the individual was considered a female. The accuracy of the mathematical model based on binary logistic regression analysis for determining sex was 70% for females and 66% for males. Conclusion The present study plays a significant role in determining sex in the Indian population by using left frontal sinus height measurement through a multidetector computed tomography scan.

A survey of water chemistry used in zebrafish facilities and their effects on early zebrafish development

Background There are a variety of published standard methods and water chemistry recommendations for zebrafish (Danio rerio) husbandry, but empirical evidence for their justification is often lacking, as is information on some variables that have important biological effects on fish. Importantly, these different recommendations could contribute to variability in results and fish welfare between or within institutions. Methods Here we document the current range of water chemistry used by various research institutions around the world and report initial findings on their effects on the development and growth of zebrafish. Over 40 institutes responded to a survey that revealed a large variation in water chemistry used for zebrafish husbandry including differences in the set-points and acceptable ranges for temperature, pH and conductivity. In subsequent experiments, zebrafish (D. rerio, WIK) embryos/larvae exposed to a large range of salt concentrations (50μM to 10mM Na+ or 30 – 2500 μS/cm) and CO2 levels (400 – 8,000 μatm). Results Larvae exposed to the lowest salt concentration (5 μM Na+ or < 30μS/cm) had a slower response to touch and their swim bladders were not inflated. Larvae exposed to 5-100 μM Na+ were 5 % shorter in total body length than those exposed to higher salt concentrations (>100 μM Na+). Zebrafish embryo/larvae exposed to intermediate pCO2 values (~2000 μatm) were 1 to 3.5% longer than those exposed to either ambient (400 μatm) or higher (4000 μatm) pCO2, but pCO2 did not affect developmental endpoints up to 4 dpf. Conclusions Overall, we highlight the magnitude of variation in water chemistry used within zebrafish research and provide some empirical evidence to show that not all of these water conditions might be optimal for developing zebrafish and reproducibility of research, although further research is necessary to determine longer-term effects of water chemistry on older larvae, juveniles and adults.

Effects of SNAPPS in clinical reasoning teaching: a systematic review with meta-analysis of randomized controlled trials.

Clinical reasoning is crucial in medical practice, yet its teaching faces challenges due to varied clinical experiences, limited time, and absence from competency frameworks. Despite efforts, effective teaching methodologies remain elusive. Strategies like the One Minute Preceptor (OMP) and SNAPPS are proposed as solutions, particularly in workplace settings. SNAPPS, introduced in 2003, offers a structured approach but lacks comprehensive evidence of its effectiveness. Methodological shortcomings hinder discerning its specific effects. Therefore, a systematic review is proposed to evaluate SNAPPS' impact on clinical reasoning teaching. We searched PubMed, EMBASE, and CINAHL for randomized controlled trials (RCTs) comparing SNAPPS against other methods. Data selection and extraction were performed in duplicate. Bias and certainty of evidence were evaluated using Cochrane RoB-2 and GRADE approach. We identified five RCTs performed on medical students and residents. Two compared SNAPPS with an active control such as One Minute Preceptor or training with feedback. None reported the effects of SNAPPS in workplace settings (Kirkpatrick Level 3) or patients (Kirkpatrick Level 4). Low to moderate certainty of evidence suggests that SNAPPS increases the total presentation length by increasing discussion length. Low to moderate certainty of evidence may increase the number of differential diagnoses and the expression of uncertainties. Low certainty of evidence suggests that SNAPPS may increase the odds of trainees initiating a management plan and seeking clarification. Evidence from this systematic review suggests that SNAPPS has some advantages in terms of clinical reasoning, self-directed learning outcomes, and cost-effectiveness. Furthermore, it appears more beneficial when used by residents than medical students. However, future research should explore outcomes outside SNAPPS-related outcomes, such as workplace or patient-related outcomes.

Graphene promotes the growth of Vigna angularis by regulating the nitrogen metabolism and photosynthesis.

Graphene has promising applications in agriculture and forestry. In the current study, six different concentrations of graphene (0mg/L, 0.01mg/L, 0.10mg/L, 1.00mg/L, 10.00mg/L, and 100.00mg/L) were used to investigate its effect on the growth and development of V. angularis plants in soil culture. The results showed that the group treated with 1.00mg/L graphene (G-1) had significantly increased plant height (19.86%), stem diameter (24.33%), and leaf area (13.69%), compared to the control group (CK). Moreover, all concentrations of graphene had positive effects on the total root length, total root surface area, and the number of root tips of V. angularis. Compared to the CK group, the G-1 group had significantly increased leaf water potential (37.89%), leaf conductivity (2.25%), and SOD, POD, and CAT activities (47.67%, 35.22%, and 199.3%, respectively). The G-1 group also showed improved leaf net photosynthetic rate, chlorophyll content, and soluble sugar content (51.28%, 24.25%, and 38.35%, respectively), compared to the CK group. Additionally, 1.00mg/L graphene led to a 23.88% increase in the podding rate and a 17.04% increase in the yield of V. angularis plants. The rhizosphere soil of V. angularis treated with 1.00mg/L graphene had a 25.14% increase in hydrolyzable nitrogen content and a 66.67% increase in available phosphorus content. RNA-seq data indicated that 1.00mg/L graphene induced the expression of photosynthesis and nitrogen transmembrane transport genes, including ATP synthase subunit b, photosystem I reaction center subunit XI, photosystem I reaction center subunit IV A, ferredoxin, and psbP-like protein 1, as well as genes for photosynthesis antenna proteins, glutamine synthetase, glutamate dehydrogenase 1, cyanate hydratase, protein fluG-like, and NRT1/PTR family, suggesting that graphene promoted the growth and development of V. angularis by enhancing the photosynthesis and nitrogen metabolism processes in V. angularis plants. Our results indicated that a suitable concentration of graphene could significantly promote the growth of V. angularis plants in soil.

SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis.

Although rice is one of the main sources of calories for most of the world, nearly 60% of rice is grown in soils that are low in phosphorus especially in Asia and Africa. Given the limitations of bioavailable inorganic phosphate (Pi) in soils, it is important to develop crops tolerant to low phosphate in order to boost food security. Due to the immobile nature of Pi, plants have developed complex molecular signalling pathways that allow them to discern changes in Pi concentrations in the environment and adapt their growth and development. Recently, in rice, it was shown that a specific serine-threonine kinase known as Phosphorus-starvation tolerance 1 (PSTOL1) is important for conferring low phosphate tolerance in rice. Nonetheless, knowledge about the mechanism underpinning PSTOL1 activity in conferring low Pi tolerance is very limited in rice. Post-translation modifications (PTMs) play an important role in plants in providing a conduit to detect changes in the environment and influence molecular signalling pathways to adapt growth and development. In recent years, the PTM SUMOylation has been shown to be critical for plant growth and development. It is known that plants experience hyperSUMOylation of target proteins during phosphate starvation. Here, we demonstrate that PSTOL1 is SUMOylated in planta, and this affects its phosphorylation activity. Furthermore, we also provide new evidence for the role of SUMOylation in regulating PSTOL1 activity in plant responses to Pi starvation in rice and Arabidopsis. Our data indicated that overexpression of the non-SUMOylatable version of OsPSTOL1 negatively impacts total root length and total root surface area of rice grown under low Pi. Interestingly, our data also showed that overexpression of OsPSTOL1 in a non-cereal species, Arabidopsis, also positively impacts overall plant growth under low Pi by modulating root development. Taken together our data provide new evidence for the role of PSTOL1 SUMOylation in mediating enhanced root development for tolerating phosphate-limiting conditions.

First record of the genus Togula (Gymnodiniales, Dinophyceae) and of the species T. jolla for the South-West Atlantic coastal waters

In the framework of a phytoplankton and biotoxin monitoring program implemented since 2008 in marine coastal waters of the Buenos Aires Province (Argentina), a gymnodinioid, photosynthetic dinoflagellate was isolated from a sample collected in Santa Teresita, establishing the strain LPCc007. The strain was identified as belonging to the psammophilic genus Togula by light microscopy based on the following distinctive characters: morphology of the cell dorso-ventrally flattened, and course of the cingulum, highly asymmetric, descending, with its ends displaced by about one to two thirds of the total length of the cell and joined by an oblique intercingular groove. The comparative morphological analysis between the motile vegetative cells of the isolated strain and the three species of the genus described to date, did not reveal significant differences that would allow it to be determined at a specific level. Instead, the pattern of development of longitudinal grooves on the hypocone of cells about to undergo mitosis observed in strain LPCc007, perfectly agrees with that described for T. jolla as a differential character. The morphological identification was consistent with LSU rDNA (D1-D2) based phylogeny that showed the sequence aggregation in the T. jolla clade. This is the first report of the genus Togula and the species T. jolla from Argentina and the South-West Atlantic Ocean coastal waters.

Clonal integration of stress signal induces morphological and physiological response of root within clonal network.

Clonal integration of defense or stress signal induced systemic resistance in leaf of interconnected ramets. However, similar effects of stress signal in root are poorly understood within clonal network. Clonal fragments of Centella asiaticas with first-young, second-mature, third-old and fourth-oldest ramets were used to investigate transportation or sharing of stress signal among interconnected ramets suffering from low water availability. Compared with control, oxidative stress in root of the first-young, second-mature and third-old ramets was significantly alleviated by exogenous ABA application to the fourth-oldest ramets as well as enhancement of antioxidant enzyme (SOD, POD, CAT and APX) activities and osmoregulation ability. Surface area and volume in root of the first-young ramets were significantly increased and total length in root of the third-old ramets was significantly decreased. POD activity in root of the fourth-oldest and third-old ramets was significantly enhanced by exogenous ABA application to the first-young ramets. Meanwhile, total length and surface area in root of the fourth-oldest and third-old ramets were significantly decreased. Ratio of belowground to aboveground biomass in the whole clonal fragments was significantly increased by exogenous ABA application to the fourth-oldest or first-young ramets. It is suggested that transportation or sharing of stress signal may induce systemic resistance in root of interconnected ramets. Specially, transportation or sharing of stress signal against phloem flow was observed in the experiment. Possible explanation is that rapid recovery of foliar photosynthesis in first-young ramets subjected to exogenous ABA application can partially reverse phloem flow within clonal network. Thus, our experiment provides insight into ecological implication on clonal integration of stress signal.

The Application of Mathematical Modelling to Optimize Steel Reinforcement Shipping Cost for Construction Projects by Julius Berger

The problem of transporting steel reinforcement for construction purposes has always been eminent in construction projects. In this study, the transportation model was applied while shipping steel reinforcement from three supply locations to three construction sites owned by Julius Berger construction limited, in the city of Port Harcourt. The study was done for 100-ton truck load of steel reinforcement bars with standard 12m lengths and diameters 8mm to 40mm. This was from the three selected steel depots in Port Harcourt. The costs of transporting the steel reinforcement bars were analyzed using the basic steps of simplex algorithm for solving transportation problems. The initial and optimum feasible solutions were obtained. The Stepping Stone method was used for the optimum solution after three consecutive iterations, which amounted to $3,813 or (₦2,897,880 as of March 2023). The result was compared with that obtained from Microsoft Excel solver. There was no difference between the two results.

The complete mitochondrial genome of Aglaia odorata, insights into its genomic structure and RNA editing sites.

Aglaia odorata, native to Guangdong, Guangxi, and Hainan provinces in China, has long been utilized as an herbal remedy in ancient China. In this study, we assembled and annotated the complete mitochondrial genome (mitogenome) of A. odorata, which spans a total length of 537,321 bp. Conformation of the A. odorata recombination was verified through PCR experiments and Sanger sequencing. We identified and annotated 35 protein-coding genes (PCGs), 22 tRNA genes, and 3 rRNA genes within the mitogenome. Analysis of repeated elements revealed the presence of 192 SSRs, 29 pairs of tandem repeats, and 333 pairs of dispersed repeats in the A. odorata mitogenome. Additionally, we analyzed codon usage and mitochondrial plastid DNAs (MTPTs). Twelve MTPTs between the plastome and mitogenome of A. odorata were identified, with a combined length of 2,501 bp, accounting for 0.47% of the mitogenome. Furthermore, 359 high-confidence C to U RNA editing sites were predicted on PCGs, and four selected RNA editing sites were specially examined to verify the creation of start and/or stop codons. Extensive genomic rearrangement was observed between A. odorata and related mitogenomes. Phylogenetic analysis based on mitochondrial PCGs were conducted to elucidate the evolutionary relationships between A. odorata and other angiosperms.

Phenotype‐dependent downstream dispersal under ordinary flow conditions in juvenile white‐spotted char

AbstractAnimal dispersal is often phenotype‐dependent and can exert evolutionary pressures on populations in which it occurs. The evolutionary pressure arising from phenotype‐dependent dispersal is called spatial sorting. We examined the evolutionary pressure arising from spatial sorting (sorting pressure) caused by downstream dispersal in juvenile white‐spotted char Salvelinus leucomaenis under ordinary flow conditions. We conducted outdoor experiments using an artificial channel with 10 steps to investigate the relationship between phenotypic characteristics and the occurrence or distance of downstream dispersal during five daytime hours. Six experiments were conducted using young‐of‐the‐year juveniles collected early in the morning of each experimental day. We focused on two phenotypes, fork length (body size) and station‐holding (SH) behavior, where juveniles remain sedentary on the substrate. Juveniles were assigned to the “SH group” if they exhibited SH behavior for more than 10 s during a 540‐s observation period, and to the “swimming group” if they exhibited SH behavior for less than 10 s. Juveniles in the swimming group had a higher occurrence of downstream dispersal than in the SH group. In addition, large juveniles in the SH group and small juveniles in the swimming group tended to show long dispersal distances. These results suggest an effective sorting pressure against juveniles with active swimming behavior. This sorting pressure may accumulate in isolated char populations located above a tall migration barrier and contribute to the creation and maintenance of the reported interpopulation variation in SH behavior.

Sea Cucumber Viscera Contains Novel Non-Holostane-Type Glycoside Toxins that Possess a Putative Chemical Defense Function.

Sea cucumbers frequently expel their guts in response to predators and an aversive environment, a behavior perceived as releasing repellents involved in chemical defense mechanisms. To investigate the chemical nature of the repellent, the viscera of stressed sea cucumbers (Apostichopus japonicus) in the Yellow Sea of China were collected and chemically analyzed. Two novel non-holostane triterpene glycosides were isolated, and the chemical structures were elucidated as 3ꞵ-O-[ꞵ-D-glucopyranosyl-(1→2)-ꞵ-D-xylopyranosyl]-(20S)-hydroxylanosta-7,25-diene-18(16)-lactone (1) and 3ꞵ-O-[ꞵ-D-quinovopyranosyl-(1→2)-ꞵ-D-xylopyranosyl]-(20S)-hydroxylanosta-7,25-diene-18(16)-lactone (2) by spectroscopic and mass-spectrometric analyses, exemplifying a triterpene glycoside constituent of an oligosaccharide containing two sugar-units and a non-holostane aglycone. Zebrafish embryos were exposed to various doses of 1 and 2 from 4 to 96 hpf. Compound 1 exposure showed 96h-LC50 41.5 µM and an increased zebrafish mortality rates in roughly in a dose- and time-dependent manner. Compound 2, with different sugar substitution, exhibited no mortality and moderate teratogenic toxicity with a 96h-EC50 of 173.5 µM. Zebrafish embryos exhibited teratogenic effects, such as reduced hatchability and total body length. The study found that triterpene saponin from A. japonicus viscera had acute toxicity in zebrafish embryos, indicating a potential chemical defense role in the marine ecosystem.