Fluorine Atoms Research Articles

Palladium-catalysed aryl/monofluoroalkylation of allenamides: access to fluoroalkyl indoles and isoquinolones.

A palladium catalysed construction of fluoroalkyl indoles and isoquinolones through aryl/monofluoroalkylation of allenamides has been developed. Monofluoromethyl-substituted heterocycles could be accessed under mild conditions with broad functional group tolerance. In addition, indole-oxindole bisheterocyclic scaffolds bearing a fluorine atom were successfully synthesized with 3-fluoro-oxindole as the nucleophile by applying this method.

Effects of polymer precursor conjugation length on the optoelectronic properties of fluorinated benzothiadiazole-based D–A systems

Due to their high electronegativity and small atomic radius without undesirable steric hindrance, the incorporation of fluorine atoms onto a conjugated backbone has been proven to be a very effective way to tune the energy levels of organic semiconductors.

Effect of substituents on the 1O2 production and biological activity of (N^N^N)Pt(py) complexes.

Twelve (N^N^N)platinum pyridyl complexes, (N^N^N)Pt(pyF), were synthesised and investigated for their singlet oxygen generation and potential biological activities. They exhibited 1IL and 1MLCT absorption transitions at approximately 325 and 360 nm, identified through TD-DFT calculations. Luminescence was observed only in the L1-derived compounds in solution, with a dual emission with the main contribution of phosphorescence under deaerated conditions. Room temperature phosphorescence was detected in all solid-state cases. Electron-withdrawing substituents at specific positions (R1 and X) and the number of fluorine atoms in R2 were found to enhance the photosensitizing capabilities of these compounds. Biological assessments, including cytotoxicity and photocytotoxicity, were conducted to evaluate their potential as chemotherapeutic agents and photosensitizers. Complexes with chloro substitution in the N^N^N tridentate ligand of the central pyridine ring exhibited promising chemotherapeutic properties. Ancillary pyridine ring substitution became significant under irradiation conditions, with fluoromethylated substituents enhancing cytotoxicity. Complex 2-CF3 was the most efficient singlet oxygen producer and a highly effective photosensitizer. CHF2-substituted complexes also showed improved photosensitizing activity. DNA binding studies indicated moderate interactions with DNA, offering insights into potential biological applications.

Conversion of amino-terephthalonitriles to multi-substituted single benzene fluorophores with utility in bioimaging.

Substitution of two fluorine atoms of the tetrafluoroterephthalonitrile (TFTN) ring (ortho to each other) by amine nucleophiles through SNAr chemistry is achievable. However, tri- and tetra-substitution towards multi-substituted single benzene fluorophores (SBFs) is harder due to increased electron richness of the TFTN moiety. Tertiary amine donors promote the molecule towards such multi-substitution guided by the steric obstruction to intramolecular charge transfer to the TFTN ring. Contrarily, secondary amine substituents with better lone pair donation to the TFTN ring cannot induce the SNAr pathway and instead promote hydrolysis of the nitrile groups of the TFTN moiety. Theoretical investigations have helped unearth the reasons for this observed difference in chemical reactivities and also explain the differences in the emission spectra. Finally, the success of the synthetic method towards multi-substitution is showcased through creation of a highly lipophilic SBF bearing an octyl unit and demonstrating its utility in in vitro cellular imaging.

Influence of alkyl chain fluorination proportion on the photovoltaic performance of non-fullerene acceptors.

Three non-fullerene acceptors (NFAs) with varying alkyl chain sizes and lengths but constant fluorine atoms were synthesized. BO-17F and HD-17F, with optimal fluorination, exhibit improved molecular packing and morphology, achieving efficiencies of 14.2% and 14.4%. This work highlights the importance of fine-tuning alkyl chains and fluorination levels in organic solar cells.

Cobalt-Catalyzed Stereoselective Synthesis of Chiral Gem-Difluorocyclopropanes with Vicinal Stereocenters

The introduction of fluorine atoms into a cyclopropane ring has been demonstrated to augment both biological activity and bioavailability. Chiral gem-difluorocyclopropanes, especially those incorporating vicinal stereocenters, are prevalent in the...

Photocatalytic, modular difunctionalization of alkenes enabled by ligand-to-metal charge transfer and radical ligand transfer.

Ligand-to-metal charge transfer (LMCT) is a mechanistic strategy that provides a powerful tool to access diverse open-shell species using earth abundant elements and has seen tremendous growth in recent years. However, among many reaction manifolds driven by LMCT reactivity, a general and catalytic protocol for modular difunctionalization of alkenes remains unknown. Leveraging the synergistic cooperation of iron-catalyzed ligand-to-metal charge transfer and radical ligand transfer (RLT), here we report a photocatalytic, modular difunctionalization of alkenes using inexpensive iron salts catalytically to function as both radical initiator and terminator. Additionally, strategic use of a fluorine atom transfer reagent allows for general fluorochlorination of alkenes, providing the first example of interhalogen compound formation using earth abundant element photocatalysis. Broad scope, mild conditions and versatility in converting orthogonal nucleophiles (TMSN3 and NaCl) directly into corresponding open-shell radical species are demonstrated in this study, providing a robust means towards accessing vicinal diazides and homo-/hetero-dihalides motifs catalytically. These functionalities are important precursors/intermediates in medicinal and material chemistry. Preliminary mechanistic studies support the radical nature of these transformations, disclosing the tandem LMCT/RLT as a powerful reaction manifold in catalytic olefin difunctionalization.

Reconciling electrolyte donicity and polarity for lithium carbon fluoride batteries

For nonaqueous electrolytes designed for carbon fluoride batteries, a higher donicity is beneficial for stabilizing positively charged carbon atoms, while a moderate polarity is favorable for detaching negatively charged fluorine atoms.

Flexible fluorinated graphite foils with high contents of the (C2F)n phase for slow neutron reflectors.

In order to prepare self-standing and flexible slow neutron reflectors made of graphite fluoride (GF) with high contents of (C2F)n structural phase, graphite foils of different thicknesses were used as starting materials for gas (F2)/solid fluorination. The maximal interlayer distance of GF was obtained with this phase thanks to the stacking sequence FCCF/FCCF; this is mandatory for the efficient reflection of slow neutrons. 71 and 77% of the (C2F)n phase were achieved for graphite foils with thicknesses of 1.0 and 0.1 mm, respectively. The interlayer distances were 8.6 Å as expected. The fluorination conditions (static mode, a long duration of 24 h, annealing in pure F2 gas for 24 h, and temperatures in the 390-460 °C range) were adapted to large pieces of graphite foils (7 × 7 cm2) in order to both avoid exfoliation and achieve a homogeneous dispersion of fluorine atoms. This process was also efficient for thinner (0.01 mm thick) graphitized graphene oxide foil. 56% of the (C2F)n phase and an interlayer of 8.6 Å were achieved for this foil when fluorination was performed at 430 °C. Whatever the nature and the thickness of the foil, their flexibilities are maintained.

Effect of fluorine on the photovoltaic properties of 2,1,3-benzothiadiazole-based alternating conjugated polymers by changing the position and number of fluorine atoms.

Fluorination is one of the most effective ways to manipulate molecular packing, optical bandgap and molecular energy levels in organic semiconductor materials. In this work, different number of fluorine atoms was introduced into the acceptor moiety 2,2'-dithiophene linked 2,1,3-benzothiadiazole, utilizing the alkylthiophene modified dithieno[2,3-d:2',3'-d']benzo[1,2-b:4,5-b] (DTBDT) as the donor unit, three polymers: PDTBDT-0F-BTs, PDTBDT-2F-BTs and PDTBDT-6F-FBTs were synthesized. With the number of fluorine atoms in each repeat unit of polymers varying from 0 to 2 and then up to 6, PDTBDT-0F-BTs, PDTBDT-2F-BTs and PDTBDT-6F-FBTs exhibited gradually downshifted energy levels and improved dielectric constants (εr) from 3.4 to 4.3 to 5.8, further successively increased charge transport mobilities. As a result, the power conversion efficiency (PCE) of the bulk heterojunction organic photovoltaic devices (BHJ-OPV) from the blend films of aforementioned polymers paired with PC71BM were gradually increased from 1.69 for PDTBDT-0F-BTs to 1.89 for PDTBDT-2F-BTs and then to 5.28 for PDTBDT-6F-FBTs. The results show that the continuous insertion of fluorine atoms into the repeating units of the benzothiadiazole conjugated polymer leads to the deepening of HOMO energy level, the increase of εr and the increase of charge mobility, which improve the efficiency of charge transfer and electron collection, thus improving the photovoltaic performance of BHJ-OPV.

Aqueous emissive cyclometalated iridium photoreductants: synthesis, computational analysis and the photocatalytic reduction of 4-nitrophenol.

Herein, we present luminescent mononuclear iridium complexes [1]3+-[4]3+ using NEt3-appended C^N chelating benzimidazole (L1-L4) and semi-flexible phenanthroline-pyrazine-based (phpy) ligands exhibiting photocatalytic reduction of 4-nitrophenol (4-NP) in the presence of NEt3 in an aqueous medium. The formation of [1]3+-[4]3+ was confirmed by HRMS, 1H-1H COSY, and 13C and 19F NMR spectroscopy. The complex [4]3+ is water soluble, whereas the others ([1]3+-[3]3+) are partially soluble. The complexes are luminescent in both CH3CN and H2O media. The DFT study reveals that the HOMO of [1]3+ resides on the C^N chelating benzimidazole and iridium center. However, it moves to the pyrazine-pyridine of the phpy unit in the case of [2]3+-[4]3+. The LUMOs are localized on the phenanthroline unit of phpy for all the complexes. This suggests an important role of the fluorine atom on electron density distribution. Spin density analysis demonstrates that the emission bands of the complexes arise from 3MLLCT states. The complex [4]3+ displays promising photocatalytic activity towards 4-NP photoreduction, whereas complexes [1]3+-[3]3+ exhibit lower reactivity. The mechanistic study suggests that the reaction proceeds through an oxidative quenching pathway, where 4-NP is reduced by accepting an electron from excited [Ir(III)] and gets oxidized to Ir(IV), which comes back to its original Ir(III) state by accepting an electron from the sacrificial electron donor NEt3.

Chemo-, regio-, and stereoselective tetrafunctionalization of fluoroalkynes enables divergent synthesis of 5-7-membered azacycles.

Alkyne annulation has been widely used in organic synthesis for the construction of azacycles with unique structural and physicochemical properties. However, the analogous transformation of fluoroalkynes remains a challenge and has seen limited progress. Herein we report a 1,2,3,4-tetrafunctionalization of polyfluoroalkynes for the divergent construction of 5-7-membered (E)-1,2-difluorovinyl azacycles. The use of the fluorine atom as a detachable "activator" not only obviates the use of any transition metal catalysts and oxidizing reagents, but also ensures the [3-5 + 2]-annulation and defluorinative functionalization of fluoroalkynes with high chemo-, regio-, and stereoselectivities. This method exhibits a broad substrate scope, good functional group tolerance, and excellent scalability, providing a modular platform for accessing fluorinated skeletons of medicinal and biological interest. The late-stage modification of complex molecules, the multi-component 1,2-diamination of fluoroalkyne, and the synthesis of valuable organofluorides from the obtained products further highlight the real-world utility of this fluoroalkyne annulation technology.

Br4F21]- - a unique molecular tetrahedral interhalogen ion containing a μ4-bridging fluorine atom surrounded by BrF5 molecules.

The reaction of [NMe4][BrF6] with an excess of BrF5 leads to the compound [NMe4][Br4F21]·BrF5. It features molecular [(μ4-F)(BrF5)4]- anions of tetrahedron-like shape containing central μ4-bridging F atoms coordinated by four BrF5 molecules. It is the most BrF5-rich fluoridobromate anion by mass. Quantum-chemical calculations showed that the μ4-F-Br bonds within the anion are essentially ionic in nature. The compound is the first example where F atoms bridge μ4-like neither to metal nor to hydrogen atoms. It was characterized by Raman spectroscopy and by single-crystal X-ray diffraction. The latter showed surprisingly that its crystal structure is related to the intermetallic half-Heusler compound and structure type MgAgAs.

Antimicrobial and FAD synthetases modulating activities of leporins A-C isolated from the sponge-associated fungus Trichoderma sp.

Abstract. Losung F, Ginting EL, Abdjul B, Kapojos MM, Maarisit W, Mentang F, Sumilat DA, Balansa W, Mangindaan REP. 2023. Antimicrobial and FAD synthetases modulating activities of leporins A-C isolated from the sponge-associated fungus Trichoderma sp. Biodiversitas 24: 6502-6515. The emergence of microbial resistance poses a formidable threat to human health, requiring the discovery of new antibiotics. In this study, we investigated the antimicrobial potential and molecular structures of the metabolites produced by a sponge's symbiont fungal species, Trichoderma sp., in vitro against S. aureus IAM 12544T and Candida albicans IFM 4954 and in-silico against the emerging antibacterial target, prokaryotic bifunctional synthetases (FADS). The molecular structures were determined using spectroscopic techniques (1D, 2D NMR, HRESIMS), while the assessment of biological activities, physicochemical properties, and molecular modifications was performed through a slightly modified disk agar diffusion method, molecular docking, SwissAdme and pkCMS tools, and bioisosterism, respectively. The analysis of spectroscopic data supported the identification of leporins A-C (1-3) as the metabolites, which exhibited strong binding affinities against the 2X0K protein target (-8.9 to -9.4 kcal/mol). Despite their being slightly weaker than known FADS modulators such as compounds 4 (-10.5 kcal/mol) and 5 (-10.5 kcal/mol), leporins A-C demonstrated a stronger binding affinity than compound 6 (-9.6 to -10.5 kcal/mol). Notably, substituting a methyl group with a fluorine atom in 1-3 resulted in lepofluorins A-C (1a-3a), which exhibited enhanced binding affinities and improved physicochemical properties compared to the existing FADS modulators. These findings suggest that leporins A-C (1-3), particularly lepofluorins A-C (1a-3a), have potential as putative novel modulators of FADS. This study provides valuable insights into the design and development of new antibiotics to combat microbial resistance.

Electronic states of fluorinated DNA components revealed by X-ray photoelectron spectroscopy

To explore the applicability of fluorinated DNA components as radiosensitizing agents for cancer treatment, the electronic states of a nucleoside (FdU) and nucleotide (FdUMP) containing fluorine atom were investigated using X-ray photoelectron spectroscopy (XPS). The fluorine atoms significantly reduced the energy gap between the valence and conduction level of the nucleotide, although the core-level states of carbon or oxygen were not significantly affected by fluorination. This molecular nature is expected to facilitate reactions with radiolysis products, such as free radicals or low-energy secondary electrons, thus inducing reductive DNA damage with high efficiency in cancer cells.

Human Health Impacts of Perfluoroalkyl Substances, Micro- and Nanoplastics Contamination of Drinking Water

PFAS are organic compounds made up of carbon and fluorine atoms, often characterized by a carbon backbone with fluorine atoms attached. The key feature is the presence of perfluoroalkyl groups, where all hydrogen atoms on the carbon chain are replaced by fluorine atoms. PFAS are considered persistent and bioaccumulative, meaning they do not break down easily in the environment and can accumulate in organisms over time. Long-term exposure to PFAS has been associated with potential health risks, including liver damage, immune system effects, developmental issues, and an increased risk of certain cancers. Microplastics and nanoplastics (MNPs) pose significant environmental and potential health risks. They can be ingested by humans on consumption of contaminated water potentially causing harm. MNPs have been found in drinking water sources, soil, and aquatic life including fish, shellfish, and plankton. These particles can accumulate in the tissues of plants and animals and can enter the human food chain. Due to these environmental and health concerns, efforts are being made to regulate and reduce the use of PFAS in various applications, reduce plastic pollution, improve waste management, and develop sustainable alternatives to mitigate the impacts of MNPs on the environment and human health.

Fluorinated 2-arylchroman-4-ones and their derivatives: synthesis, structure and antiviral activity.

A number of new biologically interesting fluorinated 2-arylchroman-4-ones and their 3-arylidene derivatives were synthesized based on the p-toluenesulfonic acid-catalyzed one-pot reaction of 2-hydroxyacetophenones with benzaldehydes. It was found that obtained (E)-3-arylidene-2-aryl-chroman-4-ones reacted with malononitrile under base conditions to form 4,5-diaryl-4H,5H-pyrano[3,2-c]chromenes. The structures of the synthesized fluorinated compounds were confirmed by 1H, 19F, and 13C NMR spectral data, and for some representatives of heterocycles also using NOESY spectra and X-ray diffraction analysis. A large series of obtained flavanone derivatives as well as products of their modification (35 examples) containing from 1 to 12 fluorine atoms in the structure was tested in vitro for cytotoxicity in MDCK cell line and for antiviral activity against influenza A virus. Among the studied heterocycles 6,8-difluoro-2-(4-(trifluoromethyl)phenyl)chroman-4-one (IC50 = 6μM, SI = 150) exhibited the greatest activity against influenza A/Puerto Rico/8/34 (H1N1) virus. Moreover, this compound appeared active against phylogenetically distinct influenza viruses, A(H5N2) and influenza B (SI's of 53 and 42, correspondingly). The data obtained suggest that the fluorinated derivatives of 2-arylchroman-4-ones are prospective scaffolds for further development of potent anti-influenza antivirals.

Pinpoint-fluorinated polycyclic aromatic hydrocarbons (F-PAHs) and their heteroaromatic analogs: syntheses, reactivities, and properties

Abstract Pinpoint-fluorinated polycyclic aromatic hydrocarbons (F-PAHs) and their heteroaromatic analogs, which are regioselectively substituted by one or two fluorine atoms, were systematically synthesized by Friedel–Crafts cyclization of fluoroalkenes (2-trifluoromethyl-1-alkenes, 1,1-difluoro-1-alkenes, 1,1,2-trifluoro-1-alkenes, and 1,1-difluoroallenes) that were Al(III)-mediated, Pd(II)-catalyzed, and In(III)-catalyzed. The key feature of these reactions is ring closures that proceed via α-fluorine-stabilized CF2 cations and related species. Using an array of synthesized F-PAHs and their heteroaromatic analogs, their chemical reactivities and physical properties were investigated. (i) The reactivities of F-PAHs and their heteroaromatic analogs were used for further ring construction. (ii) The crystal structures of F-PAHs revealed that the planarity of their π-conjugated systems was not compromised because of the low steric demand of fluorine atoms. (iii) The introduction of fluorine atom(s) into PAH molecules increased their solubility in organic solvents, which was best exemplified by the high solubility of 6-fluoropicene (5.3 wt%) and 6,7-difluoropicene (5.4 wt%) in THF. (iv) One of the F-PAHs, 13-fluoropicene exhibited p-type semiconducting behavior (mobility 6.6 × 10−2 cm2/Vs by vacuum deposition; 1.3 × 10−4 cm2/Vs by spin casting using toluene as a solvent). (v) The HOMO–LUMO energy gaps of the F-PAHs were smaller than those of the corresponding fluorine-free PAH (i.e. picene) by 0.02 to 0.26 eV, and the HOMO and LUMO energy levels were lowered by 0.10 to 0.22 and 0.12 to 0.41 eV, respectively.

A Micromechanical Study of Interactions of Cyanate Ester Monomer with Graphene or Boron Nitride Monolayer.

Polymer composites, hailed for their ultra-strength and lightweight attributes, stand out as promising materials for the upcoming era of space vehicles. The selection of the polymer matrix plays a pivotal role in material design, given its significant impact on bulk-level properties through the reinforcement/polymer interface. To aid in the systematic design of such composite systems, molecular-level calculations are employed to establish the relationship between interfacial characteristics and mechanical response, specifically stiffness. This study focuses on the interaction of fluorinated and non-fluorinated cyanate ester monomers with graphene or a BN monolayer, representing non-polymerized ester composites. Utilizing micromechanics and the density functional theory method to analyze interaction energy, charge density, and stiffness, our findings reveal that the fluorinated cyanate-ester monomer demonstrates lower interaction energy, reduced pull-apart force, and a higher separation point compared to the non-fluorinated counterpart. This behavior is attributed to the steric hindrance caused by fluorine atoms. Furthermore, the BN monolayer exhibits enhanced transverse stiffness due to increased interfacial strength, stemming from the polar nature of B-N bonds on the surface, as opposed to the C-C bonds of graphene. These molecular-level results are intended to inform the design of next-generation composites incorporating cyanate esters, specifically for structural applications.

Synthesis and pharmacological evaluation of fluoro/chloro-substituted acetyl and benzoyl esters of quinine as antimalarial agents

After establishment of the pharmacokinetic and toxicological profile of quinine derivatives using in silico approaches, this study reports the synthesis of new acetyl and benzoyl esters of quinine bearing one or more fluorine or chlorine atoms on the acetyl/benzoyl moiety. The antimalarial activity of these compounds on Plasmodium falciparum 3D7 and K1 strains as well as the antiprotozoal activity on Trypanosoma brucei brucei and Trypanosoma cruzi were evaluated. Lastly, the cytotoxicity on MRC-5SV2 cells was established. The fluoroacetyl ester compounds were found to be more active in vitro against Plasmodium falciparum 3D7 strain than the reference compound quinine. All synthesized quinine derivatives were non-cytotoxic for MRC-5SV2 cells (CC50 > 64 µM). These results confirm that the introduction of one or more fluorine atoms into acetyl and benzoyl esters of quinine can sometimes improve the biological activity.