Fish Communities In Lakes Research Articles

Impacts of hatchery-reared mandarin fish Siniperca chuatsi stocking on wild fish community and water quality in a shallow Yangtze lake

Mandarin fish Siniperca chuatsi, a valuable piscivorous fish, have been stocked into many lakes in China since the 1990s. This study did the first attempt to evaluate the ecological effects of hatchery-reared mandarin fish stocking in the Yangtze River basin lakes. Our study demonstrated a significant change in fish community composition after mandarin fish stocking, but no fish extinction was observed. No significant difference was observed in the total density of 13 forage fish before and after mandarin fish stocking, but the total biomass showed a significant decline after mandarin fish stocking. Significant differences in length-frequency distributions were observed for Carassius auratus, Pseudorasbora parva and Toxabramis swinhonis captured before and after stocking mandarin fish. No significant change in habitat distribution was detected before and after mandarin fish stocking. A marked decline in total nitrogen and a slight decline in total phosphorus were observed while a slight increasing trend for Secchi depth was found after stocking. Our findings suggested that mandarin fish stocking can increase predation pressure on forage fish and subsequently optimize the food web structure. Also, mandarin fish stocking has the potential to improve water quality and may be a feasible strategy to alleviate eutrophication of shallow Yangtze lakes.

Assessing mercury contamination patterns of fish communities in the Laurentian Great Lakes: A Bayesian perspective

We examine the spatio-temporal trends of mercury, a well-known global legacy contaminant, in eleven fish species across all of the Canadian Great Lakes. These particular fish species are selected based on their ecological, commercial, and recreational importance to the biodiversity and fishing industry of the Great Lakes. We present a two-pronged Bayesian methodological framework to rigorously assess mercury temporal trends across multiple fish species and locations. In the first part of our analysis, we develop dynamic linear models to delineate the total mercury levels and rates of change, while explicitly accounting for the covariance between fish length and mercury levels in fish tissues. We then use hierarchical modelling to evaluate the spatial variability of mercury contamination between nearshore and offshore locations, as well as to examine the hypothesis that invasive species have induced distinct shifts on fish mercury contamination trends. Our analysis suggests that the general pattern across the Great Lakes was that the elevated mercury concentrations during the 1970s had been subjected to a declining trend throughout the late 1980s/early 1990s, followed by a gradual stabilization after the late 1990s/early 2000s. The declining trend was more pronounced with top fish predators, whereas benthivorous fish species mainly underwent wax-and-wane cycles with a weaker evidence of a long-term declining trend. Historically contaminated regions, designated as Areas of Concern, and bays receiving riverine inputs are still characterized by mercury concentrations that can lead to consumption restrictions. Lake Erie displayed the lowest mercury levels across all the fish species examined. However, several species of commercial importance showed a reversing (increasing) trend in the 2000s, although their current levels do not pose any major concerns for consumption advisories. These recent trend reversals can be linked with systematic shifts in energy trophodynamics along with the food web alterations induced from the introduction of non-native species, and the potentially significant fluxes from the atmosphere.

A Bayesian assessment of polychlorinated biphenyl contamination of fish communities in the Laurentian Great Lakes

Polychlorinated biphenyl (PCB) contamination has historically posed constraints on the recreational and commercial fishing industry in the Great Lakes. Empirical evidence suggests that PCB contamination represents a greater health risk from fish consumption than other legacy contaminants. The present study attempts a rigorous assessment of the spatio-temporal PCB trends in multiple species across the Canadian waters of the Great Lakes. We applied a Bayesian modelling framework, whereby we initially used dynamic linear models to delineate PCB levels and rates of change, while accounting for the role of fish length and lipid content as covariates. We then implemented Bayesian hierarchical modelling to evaluate the temporal PCB trends during the dreissenid pre- and post-invasion periods, as well as the variability among and within the water bodies of the Great Lakes system. Our analysis indicates that Lake Ontario is characterized by the highest PCB levels among nearly all of the fish species examined. Historically contaminated local areas, designated as Areas of Concern, and embayments receiving riverine inputs displayed higher concentrations within each of the water bodies examined. The general temporal trend across the Great Lakes was that the high PCB concentrations during the early 1970s followed a declining trajectory throughout the late 1980s/early 1990s, likely as a result of the reductions in industrial emissions and other management actions. Nonetheless, after the late 1990s/early 2000s, our analysis provided evidence of a decline in the rate at which PCB concentrations in fish were dropping, accompanied by a gradual establishment of species-specific, steady-state concentrations, around which there is considerable year-to-year variability. The overall trends indicate that reduced contaminant emissions have brought about distinct beneficial changes in fish PCB concentrations, but past historical contamination along with other external or internal stressors (e.g., invasive species, climate change) continue to modulate the current levels, thereby posing potential risks to humans through fish consumption.

Large-scale changes in the littoral fish communities of lakes in southeastern Ontario, Canada

Biodiversity loss is a serious issue for freshwater fishes in temperate climates and there is a need for more information in this area. A study was conducted to assess fish community changes in the littoral zone of 22 lakes over a 45 year period (compared years 1969–1979 and year 2014). To compare fish communities, historical seining records were compiled for 22 inland lakes and compared with contemporary data sampled using the same protocol. Fish abundance data analyzed using a multivariate approach identified a shift from cyprinid-dominated communities to centrarchid-dominated communities between time periods. There was no evidence to support a strong influence of invasive species on these communities, but there have been significant changes in temperature and land use around these lakes since the historical data sets were collected. This is an important contribution to our understanding of biodiversity change in North American freshwater fish communities and may influence fisheries management approaches in the future.

Feeding Aquatic Ecosystems: Whole-Lake Experimental Addition of Angler’s Ground Bait Strongly Affects Omnivorous Fish Despite Low Contribution to Lake Carbon Budget

It is well documented that aquatic ecosystems may be subsidized by naturally derived terrestrial carbon sources. In contrast, the intentional or unintentional subsidy of animal populations by human-derived feed resources and their ecosystem effects are poorly studied. We added ground baits of the type, amount and temporal duration commonly applied by anglers targeting cyprinid fishes to a small lake, and studied behavior, diet composition and annual growth rate of the lake fish community in response to the bait addition. Based on recordings by a high-resolution ultrasonic telemetry array, common carp (Cyprinus carpio) as a model benthivore spend more time at the sites where ground baits were added, and they significantly reduced their home range relative to the period before bait addition. Furthermore, many omnivorous cyprinid fish species were regularly caught by angling at the feeding sites, indicating active ingestion of the artificially added food items. Stable isotope analyses of 13C and 15N showed that in particular larger specimens of common carp, bream (Abramis brama), white bream (Blicca bjoerkna), tench (Tinca tinca), roach (Rutilus rutilus) and rudd (Scardinius erythrophthalmus) included substantial amounts of angler baits into their diet. There was also a significant acceleration of growth in bream and white bream after bait addition, most likely attributable to the energetic benefits from bait addition. In contrast, there was no response in annual growth rate in top predators, suggesting they did not benefit from the subsidy. The amount of carbon introduced was very low (about 1%) relative to an estimate of in-lake C fixation by autotrophs. However, if the C added by bait was compared with the coarsely estimated secondary production of benthic macroinvertebrates in the lake, the C available to benthivorous and omnivorous fishes was comparable between natural resources and angler baits. We conclude that human-derived feed resources associated with recreational fishing may constitute a substantial subsidy to omnivorous fishes in lakes, in particular if the food is provided in form of particles, which are readily accessible and found at repeatable feeding places and over sufficiently long time periods during a year. The long-term consequences for the receiving ecosystems still have to be elucidated.

Ecological influences of human population size and distance to urban centres on fish communities in tropical lakes

Abstract Human population growth is a major cause of species extinction worldwide, and tropical fresh waters are among the most imperilled ecosystems. The identification of major drivers of human impacts on fish can benefit conservation programmes and management plans. The influences of the proximity to urban centres and human population size on six ecological indicators of fish communities (abundance, biomass, richness, diversity, average size, and size dominance pattern) were investigated in 48 floodplain lakes of five main rivers of the Brazilian Amazon (Tocantins, Tapajós, Negro, Solimões, and the Lower Amazon). These ecological indicators were also compared among the rivers studied and checked for any influence of the environmental variables of lakes (size, shape of natural shoreline, distance to the main river channel, depth, transparency, conductivity, and dissolved oxygen). Lake distance to urban centre was positively related to average fish size and dominance of large fish, indicating direct human effects caused by fisheries or indirect effects by habitat alteration (e.g. deforestation). Unexpected positive relationships between human population size and the richness and diversity of fishes were found, and may be caused by ecological compensatory effects, the abundance of rare non‐fished species, or the proximity of an urban centre to ecotone areas. The other ecological indicators were unrelated to anthropogenic variables. Environmental factors affected fish communities, but did not change the conclusions regarding the effect of the anthropogenic variables. River basin was strongly related to species richness, diversity, biomass, and abundance of fish. Distance to the river channel was positively related to fish biomass. The disappearance of large fish threatens the food security of riverine communities, and may harm essential ecosystem services. Conservation measures, including local management initiatives, protected areas, fisheries monitoring, and the enforcement of existing fishing rules need to be improved or established near urban centres in order to restore healthy fish communities in the Brazilian Amazon.

Effectiveness of terrestrial protected areas for conservation of lake fish communities.

Freshwater protected areas are rare even though freshwater ecosystems are among the most imperiled in the world. Conservation actions within terrestrial protected areas (TPAs) such as development or resource extraction regulations may spill over to benefit freshwater ecosystems within their boundaries. Using data from 175 lakes across Ontario, Canada, we compared common indicators of fish-assemblage status (i.e., species richness, Shannon diversity index, catch per unit effort, and normalized-length size spectrum slopes) to evaluate whether TPAs benefit lake fish assemblages. Nearest neighbor cluster analysis was used to generate pairs of lakes: inside versus outside, inside versus bordering, and bordering versus outside TPAs based on lake characteristics. The diversity and abundance indicators did not differ significantly across comparisons, but normalized-length size spectrum slopes (NLSS) were significantly steeper in lakes outside parks. The latter indicated assemblage differences (greater abundances of small-bodied species) and less-efficient energy transfer through the trophic levels of assemblages outside parks. Although not significantly different, pollution- and turbidity-tolerant species were more abundant outside parks, whereas 3 of the 4 pollution-intolerant species were more abundant within parks. Twenty-one percent of the difference in slopes was related to higher total dissolved solids concentrations and angling pressure. Our results support the hypothesis that TPAs benefit lake fish assemblages and suggest that NLSS slopes are informative indicators for aquatic protected area evaluations because they represent compositional and functional aspects of communities.

Influences of ENSO and PDO phenomena on the local climate variability can drive extreme temperature and depth conditions in a Pampean shallow lake affecting fish communities

The aim of this study was to characterize occurrence of extreme temperature and depth conditions affecting fish community in a shallow lake as result of local climate variability, in turn influenced by the ENSO and PDO phenomena. Extreme depth and water temperature events (modeled from local weather conditions) were characterized from 1966 to 2012 to estimate changes in Chascomus lake fish communities. The ENSO and PDO influences on the occurrence probability of these ecosystem changes were investigated. Four significant changes in Chascomus Lake fish assemblage were identified during period assessed, as response to extreme temperature and depth events. Extreme high depth conditions would have changed fish community during 1987 and 2002, leading to a configuration characterized by the absence of the most emblematic fish species in Chascomus Lake, the pejerrey (Odontesthes bonariensis). On the other hand, extreme low water temperatures would have promoted a fish community characterized by the dominance of this last species during 1966–1986, 1997–2001 and 2008–2013 periods. Furthermore, extreme shortening in pejerrey spawning season was significantly related with decrease of its relative abundance. The occurrence probability of the extreme physical conditions modifying Chascomus Lake fish communities was significantly explained by ENSO (by depth influences) and by PDO (by water temperature influences). Thus, this study showed strong correlations between the ENSO and PDO influences and the occurrence probability of the extreme physical conditions changing fish community in Chascomus Lake.

Hydropower impacts on reservoir fish populations are modified by environmental variation

Global transition towards renewable energy production has increased the demand for new and more flexible hydropower operations. Before management and stakeholders can make informed choices on potential mitigations, it is essential to understand how the hydropower reservoir ecosystems respond to water level regulation (WLR) impacts that are likely modified by the reservoirs' abiotic and biotic characteristics. Yet, most reservoir studies have been case-specific, which hampers large-scale planning, evaluation and mitigation actions across various reservoir ecosystems. Here, we investigated how the effect of the magnitude, frequency and duration of WLR on fish populations varies along environmental gradients. We used biomass, density, size, condition and maturation of brown trout (Salmo trutta L.) in Norwegian hydropower reservoirs as a measure of ecosystem response, and tested for interacting effects of WLR and lake morphometry, climatic conditions and fish community structure. Our results showed that environmental drivers modified the responses of brown trout populations to different WLR patterns. Specifically, brown trout biomass and density increased with WLR magnitude particularly in large and complex-shaped reservoirs, but the positive relationships were only evident in reservoirs with no other fish species. Moreover, increasing WLR frequency was associated with increased brown trout density but decreased condition of individuals within the populations. WLR duration had no significant impacts on brown trout, and the mean weight and maturation length of brown trout showed no significant response to any WLR metrics. Our study demonstrates that local environmental characteristics and the biotic community strongly modify the hydropower-induced WLR impacts on reservoir fishes and ecosystems, and that there are no one-size-fits-all solutions to mitigate environmental impacts. This knowledge is vital for sustainable planning, management and mitigation of hydropower operations that need to meet the increasing worldwide demand for both renewable energy and ecosystem services delivered by freshwaters.

Size diversity and species diversity relationships in fish assemblages of Western Palearctic lakes

Body size, coupled with abundance and taxonomy, may help to understand the mechanisms shaping community structure. Since the body size of fish is closely related to their trophic niche, size diversity (based on individual body size) of fish communities may capture intraspecific variations in fish trophic niches that are not detected by species diversity. Thus, the relationship between size diversity and species diversity may help to integrate variation at both intraspecific and interspecific levels. We studied the relationship between species diversity and size diversity as a measure of the degree of overlap in size among species and thereby the potential overlap in niches in a community. We hypothesized that the relationship between size diversity and species would be different across the European continent due to different levels of size overlap in fish communities. The data were derived from samplings of fish communities using standardised benthic gill nets in 363 lakes. At the continental scale, size diversity increased with species diversity; at the ecoregion scale, the slope of the relation changed across the continent, with the greatest mismatch occurring in northern Europe where communities comprised only one or a few species, but each of which exhibited a great range in size. There was an increase in slope towards the south with significant relations for four out of six ecoregions. The steeper size diversity‐species diversity slope at lower latitudes is attributable to a lower overlap in fish size and thus likely to finer niche separation. Our results also suggest that size diversity is not a strong surrogate for species diversity in European lake fish communities. Thus, particularly in fish communities composed of few species, measuring size diversity may help to detect potential functional variation which may be neglected by measuring species diversity alone.

Incorporating basic and applied approaches to evaluate the effects of invasive Asian Carp on native fishes: A necessary first step for integrated pest management.

Numerous studies throughout North America allege deleterious associations among invasive Asian Carp and native fishes; however, no empirical evidence on a system-wide scale exists. We used Mississippi River Basin fish community data collected by the Long Term Resource Monitoring program and the Missouri Department of Conservation to evaluate possible interaction between Asian Carp and native fishes. Results from two decades of long-term monitoring throughout much of the Mississippi River suggest that Silver Carp relative abundance has increased while relative abundance (Bigmouth Buffalo [F 3, 8240 = 6.44, P<0.01] and Gizzard Shad [F 3, 8240 = 31.04, P<0.01]) and condition (Bigmouth Buffalo [slope = -0.11; t = -1.71; P = 0.1014] and Gizzard Shad [slope = -0.39; t = -3.02; P = 0.0073]) of native planktivores have declined. Floodplain lake qualitative evaluations yielded similar results; floodplain lake fish communities were likely altered (i.e., reductions in native species) by Silver Carp. Furthermore, laboratory experiments corroborated field evidence; Silver Carp negatively influence native planktivores through competition for prey (all comparisons, P > 0.05). To this end, this study provides evidence that Silver Carp are likely adversely influencing native fishes; however, mere presence of Silver Carp in the system does not induce deleterious effects on native fishes. To the best of our knowledge, this evaluation is the first to describe the effects of Asian Carp throughout the Mississippi River Basin and could be used to reduce the effects of Asian Carp on native biota through an integrated pest management program as suggested by congressional policy. Despite the simplicity of the data analyzed and approach used, this study provides a framework for beginning to identify the interactions of invasive fish pests on native fishes (i.e., necessary first step of integrated pest management). However, knowledge gaps remain. We suggest future efforts should conduct more in depth analyses (i.e., multivariate statistical approaches) that investigate the influence on all native species.

How Quickly Do Fish Communities Recover From Boat Electrofishing in Large Lakes?

Abstract For specific sampling questions researchers may need to target ideal habitats concurrently and collect reliable fish community data, but unfortunately, we know little about the recovery rate of fish communities in areas recently subjected to electrofishing. In small systems, electrofishing can quickly deplete a sample area but this effect is unlikely at larger spatial scales. We conducted an experiment to identify how quickly fish communities recover from electrofishing in Green Bay, an embayment of Lake Michigan. We conducted electrofishing at 31 sites that were randomly assigned to be resampled at 0.25, 1, 3, 6, 24, or 48 h postrelease of marked fish. We marked all fish ≥ 150 mm and released them at their capture site. We found no differences in catch per unit effort, mean total length, species richness, Shannon's diversity, or Shannon's evenness between marking and recapture runs for any length of recovery duration between electrofishing runs. We recaptured only one of 349 marked fish in the site where it was released. Recapture of five fish in areas outside where they were released was unrelated to recovery duration between electrofishing events. In large, open systems like Green Bay, we found that disturbances caused by electrofishing are temporary (&amp;lt; 15 min) and suspect that any fish removed are quickly replaced by new immigrants to the study area. Due to high turbidity in this eutrophic–hypereutrophic system, we suspect that electrofishing efficiency was low; therefore resampling had the potential benefit of collecting individuals missed during marking runs. We conclude that fish communities in large lakes recover quickly following electrofishing and sites can be sampled concurrently within the same day and provide similar, or additional, fish community information.

Projected compositional shifts and loss of ecosystem services in freshwater fish communities under climate change scenarios

What are the projected impacts of climate change on community composition and consequentially on the distribution of functional traits? Answers to these questions are somewhat unclear but critical for designing ecological management strategies. Here we forecast potential impacts of climate change on freshwater lake fish communities of Ontario, Canada, by contrasting species composition, species richness, functional diversity and functional composition for present versus projected communities under “best-case” and “business-as-usual” climate change scenarios. Results indicate that the composition of projected communities differs from present, and includes a shift from cold- and cool-water species to warm-water species. Species richness in projected communities is estimated to increase by 60–81%, but functional diversity is estimated to decline. These projected communities are estimated to have on average 22% shorter mean body length, 38% lighter body weight and 36% less fecundity than present. Also, the present configuration of sport and commercially important fishes are projected to decline in their distribution, potentially impacting ecosystem services associated with commercial and recreational fisheries. Together, climate change may initiate a compositional shift that may result in an important shift in community functional structure, which is likely to affect important aquatic ecosystem services.

Dissecting spatiotemporal patterns of functional diversity through the lens of Darwin's naturalization conundrum.

Darwin's naturalization conundrum describes the paradigm that community assembly is regulated by two opposing processes, environmental filtering and competitive interactions, which predict both similarity and distinctiveness of species to be important for establishment. Our goal is to use long‐term, large‐scale, and high‐resolution temporal data to examine diversity patterns over time and assess whether environmental filtering or competition plays a larger role in regulating community assembly processes. We evaluated Darwin's naturalization conundrum and how functional diversity has changed in the Laurentian Great Lakes fish community from 1870 to 2010, which has experienced frequent introductions of non‐native species and extirpations of native species. We analyzed how functional diversity has changed over time by decade from 1870 to 2010 at three spatial scales (regional, lake, and habitat) to account for potential noninteractions between species at the regional and lake level. We also determined which process, environmental filtering or competitive interactions, is more important in regulating community assembly and maintenance by comparing observed patterns to what we would expect in the absence of an ecological mechanism. With the exception of one community, all analyses show that functional diversity and species richness has increased over time and that environmental filtering regulates community assembly at the regional level. When examining functional diversity at the lake and habitat level, the regulating processes become more context dependent. This study is the first to examine diversity patterns and Darwin's conundrum by integrating long‐term, large‐scale, and high‐resolution temporal data at multiple spatial scales. Our results confirm that Darwin's conundrum is highly context dependent.

Interchange between flooding and drying, and spatial connectivity control the fish metacommunity structure in lakes of the Pantanal wetland

We evaluated if the homogenizing effect of flooding and the environmental differentiation during the dry period, as reflected in fish communities, are related to the type of connection between floodplain lakes and rivers. In order to do this, we sampled fish in the early dry and the early flood hydroperiods. We estimated the fish assemblage structure, as fish species richness, abundance, biomass, and beta diversity. We found that biomass varied among connectivity levels and hydroperiods, while richness varied among hydroperiods and density was influenced by an interaction between connectivity and hydroperiod. Species composition varied as a function of both connection type and hydroperiod, but the interaction between these factors was not observed. The fish assemblage in isolated lakes differed from those in temporarily and permanently connected lakes. Beta diversity increased from the early dry to the early flood period and was higher in temporarily connected lakes than in permanently connected lakes. These results indicated that the spatio-temporal variations in local fish communities of floodplain lakes can be attributed to differences in connectivity. Consequently, they strengthen the hypothesis that dispersal plays a fundamental role in shaping the pattern of fish species diversity in floodplain lakes.

Lethal and sub-lethal responses of native freshwater mussels exposed to granular Bayluscide®, a sea lamprey larvicide

Abstract The invasive sea lamprey ( Petromyzon marinus ) poses a substantial threat to fish communities in the Great Lakes. Efforts to control sea lamprey populations typically involve treating tributary streams with lampricides on a recurring cycle. The presence of a substantial population of larval sea lampreys in the aquatic corridor between Lakes Huron and Erie prompted managers to propose a treatment using the granular formulation of Bayluscide® that targets larval sea lampreys that reside in sediments. However, these treatments could cause adverse effects on native freshwater mussels—imperiled animals that also reside in sediments. We estimated the risk of mortality and sub-lethal effects among eight species of adult and sub-adult mussels exposed to Bayluscide® for durations up to 8 h to mimic field applications. Mortality was appreciable in some species, especially in sub-adults (range, 23–51%). The lethal and sub-lethal effects were positively associated with the duration of exposure in most species and life stage combinations. Estimates of the median time of exposure that resulted in lethal and sub-lethal effects suggest that sub-adults were often affected by Bayluscide® earlier than adults. Siphoning activity and burrowing position of mussels during exposure may have moderated the uptake of Bayluscide® and may have influenced lethal and sub-lethal responses. Given that the various species and life stages were differentially affected, it will be difficult to predict the effects of Bayluscide® treatments on mussels.

Feeding ecology and niche overlap of Lake Ontario offshore forage fish assessed with stable isotopes

The forage fish communities of the Laurentian Great Lakes continue to experience changes that have altered ecosystem structure, yet little is known about how they partition resources. Seasonal, spatial, and body size variation in δ13C and δ15N was used to assess isotopic niche overlap and resource and habitat partitioning among the five common offshore Lake Ontario forage fish species (n = 2037; alewife (Alosa pseudoharengus), rainbow smelt (Osmerus mordax), round goby (Neogobius melanostomus), and deepwater (Myoxocephalus thompsonii) and slimy (Cottus cognatus) sculpins). Round goby had the largest isotopic niche (6.1‰2, standard ellipse area), followed by alewife (3.4‰2), while rainbow smelt, slimy sculpin, and deepwater sculpin had the smallest and similar niche size (1.7‰2–1.8‰2), with only the sculpin species showing significant isotopic niche overlap (&gt;63%). Stable isotopes in alewife, round goby, and rainbow smelt varied with location, season, and size, but did not vary in the sculpin species. Lake Ontario forage fish species have partitioned food and habitat resources, and non-native alewife and round goby have the largest isotopic niche, suggestive of a boarder ecological niche, and may contribute to their current high abundance.

Community structure affects trophic ontogeny in a predatory fish.

While most studies have focused on the timing and nature of ontogenetic niche shifts, information is scarce about the effects of community structure on trophic ontogeny of top predators. We investigated how community structure affects ontogenetic niche shifts (i.e., relationships between body length, trophic position, and individual dietary specialization) of a predatory fish, brown trout (Salmo trutta). We used stable isotope and stomach content analyses to test how functional characteristics of lake fish community compositions (competition and prey availability) modulate niche shifts in terms of (i) piscivorous behavior, (ii) trophic position, and (iii) individual dietary specialization. Northern Scandinavian freshwater fish communities were used as a study system, including nine subarctic lakes with contrasting fish community configurations: (i) trout‐only systems, (ii) two‐species systems (brown trout and Arctic charr [Salvelinus alpinus] coexisting), and (iii) three‐species systems (brown trout, Arctic charr, and three‐spined sticklebacks [Gasterosteus aculeatus] coexisting). We expected that the presence of profitable small prey (stickleback) and mixed competitor–prey fish species (charr) supports early piscivory and high individual dietary specialization among trout in multispecies communities, whereas minor ontogenetic shifts were expected in trout‐only systems. From logistic regression models, the presence of a suitable prey fish species (stickleback) emerged as the principal variable determining the size at ontogenetic niche shifts. Generalized additive mixed models indicated that fish community structure shaped ontogenetic niche shifts in trout, with the strongest positive relationships between body length, trophic position, and individual dietary specialization being observed in three‐species communities. Our findings revealed that the presence of a small‐sized prey fish species (stickleback) rather than a mixed competitor–prey fish species (charr) was an important factor affecting the ontogenetic niche‐shift processes of trout. The study demonstrates that community structure may modulate the ontogenetic diet trajectories of and individual niche specialization within a top predator.

Influence of protected areas on fish assemblages and fisheries in a large tropical river

AbstractProtected areas are one of the main tools for biological conservation worldwide. Although they have contributed to an increase in fish abundance and alleviated the impacts of fishing on marine ecosystems, the impacts of fishing and of protected areas in freshwater ecosystems are less well known. We compared fishing productivity and fish assemblage descriptors of two distinct protected areas designated for sustainable use of natural resources and an unprotected area in the Tapajós River, in the Brazilian Amazon. Two hypotheses were tested: (1) fishers from protected areas have higher catch per unit effort than those from unprotected areas; and (2) fish assemblages in protected areas have higher biomass, abundance, presence of target species, species richness, fish size and mean trophic level than those in unprotected areas. A total of 2,013 fish landings were recorded and two surveys were undertaken to sample fishes. Eleven environmental parameters were quantified to distinguish between effects of environmental heterogeneity and protected areas. The catch per unit effort of fishers was higher within protected areas than in unprotected areas, suggesting that protected areas reduce the levels of fishing pressure and increase fishing productivity. However, the fish assemblage descriptors were correlated more with environmental variables than with protected areas, indicating a relatively weak effect of protected areas on fish communities in lakes. The results highlight the importance of considering the influence of environmental heterogeneity in fish conservation programmes, and the positive effect of protected areas on fishing productivity in freshwater environments.

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods.

Organisms continuously release DNA into their environments via shed cells, excreta, gametes and decaying material. Analysis of this 'environmental DNA' (eDNA) is revolutionizing biodiversity monitoring. eDNA outperforms many established survey methods for targeted detection of single species, but few studies have investigated how well eDNA reflects whole communities of organisms in natural environments. We investigated whether eDNA can recover accurate qualitative and quantitative information about fish communities in large lakes, by comparison to the most comprehensive long-term gill-net data set available in the UK. Seventy-eight 2L water samples were collected along depth profile transects, gill-net sites and from the shoreline in three large, deep lakes (Windermere, Bassenthwaite Lake and Derwent Water) in the English Lake District. Water samples were assayed by eDNA metabarcoding of the mitochondrial 12S and cytochrome b regions. Fourteen of the 16 species historically recorded in Windermere were detected using eDNA, compared to four species in the most recent gill-net survey, demonstrating eDNA is extremely sensitive for detecting species. A key question for biodiversity monitoring is whether eDNA can accurately estimate abundance. To test this, we used the number of sequence reads per species and the proportion of sampling sites in which a species was detected with eDNA (i.e. site occupancy) as proxies for abundance. eDNA abundance data consistently correlated with rank abundance estimates from established surveys. These results demonstrate that eDNA metabarcoding can describe fish communities in large lakes, both qualitatively and quantitatively, and has great potential as a complementary tool to established monitoring methods.