Fish-based Index Research Articles

Development of a fish-based index of biotic integrity (FIBI) to assess the quality of Bandama River in Côte d’Ivoire

The aim of this study was to develop effective tools based on fish assemblages, allowing the development of an effective assessment approach for the ecological status of running waters. Fish samples were collected using gill-nets with mesh sizes of 8, 10, 12, 14, 15, 18, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75 and 80 mm. Forty sites were visited from October 2008 to September 2009 in the Bandama River. A large part of the data set on fish descriptors associated with environmental parameters was compiled from regional databases. For each of the fish assemblage descriptors, stepwise multiple linear regressions with habitat variables were carried out. The residuals of the models obtained were used as candidate metrics independent of natural environmental factors. Student t-tests used to compare each metric in reference and disturbed samples indicated significant difference (P < 0.05) for six metrics. The standard residuals of metrics selected were added to constitute the final index. This multimetric index of fish assemblage integrity could serve as a practical technical reference for conducting cost-effective biological assessments of lotic systems.

Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods

We surveyed montane meadows in the northern Sierra Nevada and southern Cascades for two field seasons to compare commonly used aquatic and terrestrial-based assessments of meadow condition. We surveyed (1) fish, (2) reptiles, (3) amphibians, (4) aquatic macroinvertebrates, (5) stream geomorphology, (6) physical habitat, and (7) terrestrial vegetation in 79 meadows between the elevations of 1,000 and 3,000 m. From the results of those surveys, we calculated five multi-metric indices based on methods commonly used by researchers and land management agencies. The five indices consisted of (1) fish only, (2) native fish and amphibians, (3) macroinvertebrates, (4) physical habitat, and (5) vegetation. We compared the results of the five indices and found that there were significant differences in the outcomes of the five indices. We found positive correlations between the vegetation index and the physical habitat index, the invertebrate index and the physical habitat index, and the two fish-based indices, but there were significant differences between indices in both range and means. We concluded that the five indices provided very different interpretations of the condition in a given meadow. While our assessment of meadow condition changed based on which index was used, each provided an assessment of different components important to the overall condition of a meadow system. Utilizing a multimetric approach that accounts for both terrestrial and aquatic habitats provides the best means to accurately assess meadow condition, particularly given the disproportionate importance of these systems in the Sierra Nevada landscape.

Impact of the sampling protocol in assessing ecological trends in an estuarine ecosystem: The empirical example of the Gironde estuary

In view of the European Union (EU) requirements to diagnose and monitor the ecological status of estuarine ecosystems using fish-based indicators, we assessed the effect of the sampling protocol in meeting these objectives. Using three different sampling surveys, we evaluated the impact of four components, i.e. sampling gear, spatial extent, length of time series and temporal window analysed, on the detection of ecological trends in the Gironde estuary, estimated by different types of fish-based indicator. For each component, temporal trends of several fish-based indicators were analysed and for the final diagnosis these temporal trends were combined. The results showed that sampling gear had significant effects on the assessment of ecological trends, as it was determinant in the functional description of the fish community and also in the final diagnosis obtained. When on the one hand the lower estuary and the estuarine plume and on the other hand the upper-middle estuary, were considered, we were able to visualise the spatialized functional organization of the estuary and to assess its ecological status more precisely. Increased length of marine fish species in the lower estuary and increased delta diversity in the middle estuary suggested that larger individuals of marine species had moved from outside the estuary to the middle estuary. These trends, associated with the spatial change in environmental conditions (salinity and temperature) in the Gironde estuarine ecosystem may be indicative of a functional shift, from diadromous to marine migrant-dominated assemblages in that ecosystem. We hypothesized that the Gironde estuary was actually more suited to providing nursery habitats for the juveniles of marine migrants and marine stragglers than providing migratory corridors and nursery habitats for species seeking low salinities for a period in their life cycle. The present study supported the hypothesis of a marinisation of the Gironde estuary. When the four components of the protocol, i.e. gear, space, and time (length and temporal windows of time series), were compared this study also suggested that fish length and notably the “temporal window” on which the analyses were based were the most “sensitive” components of the sampling protocol when assessing fish ecological trends in estuaries. It clearly underlined the fact that long time series were essential for evaluating changes in the ecological functioning of these estuarine ecosystems.

Is parasitism in fish a good metric to assess ecological water quality in transitional waters? What can be learned from two estuarine resident species?

Fish-based indices are becoming important bioassessment tools for estuaries since the European Water Framework Directive included fish as a biological quality element to be monitored for the assessment of ecological status of those systems. In particular, data on species composition and abundance of the ichthyofauna must be used to evaluate the ecological status of European estuaries, but other factors like measures of fish health are also considered important metrics. These indicators of fish health include infections by parasites. The common goby, Pomastoschistus microps, and the Lusitanian toadfish, Halobatrachus didactylus, are fairly sedentary fish, very abundant in Portuguese estuaries, and were used to investigate if parasitism in fishes in transitional waters is a good metric to reflect anthropogenic impacts in the environment. No significant relationships were observed between the parasite levels in these two species and the intensity of human pressures, either at a large or small spatial scale. Results obtained also are contrary to the generalized idea that a higher proportion of parasitized fish necessarily reflects a decrease in their condition as a result of habitat degradation. A high degree of temporal and ontogenetic variability in the parasite levels of both P. microps and H. didactylus was detected, which make it difficult to establish the scores for this hypothetical metric even if significant relationships between parasite levels and human pressures are identified in the future. Therefore, the present work does not uphold the hypothesis that parasitism in fish is a good metric to assess ecological water quality in transitional waters.

Ecological quality assessment of transitional waters based on fish assemblages in Portuguese estuaries: The Estuarine Fish Assessment Index (EFAI)

The assessment of water quality has changed markedly worldwide over the last years, especially in Europe due to the implementation of the Water Framework Directive. Fish was considered a key-element in this context and several fish-based multi-metric indices have been proposed. In this study, we propose a multi-metric index, the Estuarine Fish Assessment Index (EFAI), developed for Portuguese estuaries, designed for the overall assessment of transitional waters, which could also be applied at the water body level within an estuary. The EFAI integrates seven metrics: species richness, percentage of marine migrants, number of species and abundance of estuarine resident species, number of species and abundance of piscivorous species, status of diadromous species, status of introduced species and status of disturbance sensitive species. Fish sampling surveys were conducted in 2006, 2009 and 2010, using beam trawl, in 13 estuarine systems along the Portuguese coast. Most of the metrics presented a high variability among the transitional systems surveyed. According to the EFAI values, Portuguese estuaries presented a “Good” water quality status (except the Douro in a particular year). The assessments in different years were generally concordant, with a few exceptions. The relationship between the EFAI and the Anthropogenic Pressure Index (API) was not significant, but a negative and significant correlation was registered between the EFAI and the expert judgement pressure index, at both estuary and water body level. The ordination analysis performed to evaluate similarities among North-East Atlantic Geographical Intercalibration Group (NEAGIG) fish-based indices put in evidence four main groups: the French index, since it is substantially different from all the other indices (uses only four metrics based on densities); indices from Ireland, United Kingdom and Spain (Astúrias and Cantábria); the Dutch and German indices; and the indices of Belgium, Portugal and Spain (Basque country). The need for detailed studies, including comparative approaches, on several aspects of these assessment tools, especially in what regards their response to anthropogenic pressures was stressed.

A diagnostic modelling framework to construct indices of biotic integrity: A case study of fish in the Zeeschelde estuary (Belgium)

We propose a coherent regression model building framework to construct fish-based indices. More specifically, we concentrate on the selection of an optimal set of metrics which remains a difficult problem. The paper departs from the observation that an index of biotic integrity (IBI) is analogous to a diagnostic model in medicine assessing the health condition of a patient from a series of biomarkers. In the same vein, an IBI is a diagnostic model predicting the ecosystem condition of a site from a set of (scored) metrics. Metrics are community attributes sensitive to anthropogenic pressure and their scores express the “distance to target” to a reference condition. In a medical context, Receiver Operating Characteristic (ROC) curves are commonly used to assess the diagnostic accuracy of laboratory tests. An ROC curve plots the sensitivity of a test (Se; the capacity to detect a disease or degradation) as a function of its false positive fraction (FPF) which is the complement of the specificity (Sp = 1 – FPF; the capacity to recognise a healthy person or a reference condition). The ROC curve represents the strength of the index to discriminate between degraded and reference sites. Higher curves correspond to stronger tests as then a higher sensitivity can be combined with a lower false positive fraction. Hence, it is intuitively clear to use summary statistics of the ROC curve as criteria to optimise medical tests or biotic indices. In this paper, we illustrate the value of this modelling framework with a case study in the Zeeschelde estuary in Belgium. In essence, a “traditional” IBI is an average of metrics scoring relevant properties of the ecosystem. We demonstrate this average score model (AVG) is a special member of the more flexible predictive logistic model (PLM) family. The selection of a set of metrics becomes equivalent to variable selection in statistical model building. We apply model building techniques as best subsets regression to facilitate the search for an optimal suite of metrics from a candidate set and use cross-validation to avoid overfitting. The results show that a few metrics suffice to discriminate between most-impacted and least-impacted sites.

Development and evaluation of a fish-based index to assess biological integrity of Mediterranean streams

Additional funding was provided by the Spanish Ministry of Science (CGL2009‐12877‐C02‐01 and Consolider‐Ingenio 2010 CSD2009‐00065)

Development of a fish-based index (FBI) of biotic integrity for French lakes using the hindcasting approach

The European Water Framework Directive clearly indicates that fish is one of the “quality elements” to be considered for the assessment of lentic systems. However, few fish-based indices (FBIs) of biotic integrity have been developed for lakes so far. Hence, the aim of our study was to develop such a tool for French lakes. Fish surveys, lakes natural environmental parameters, catchment-scale anthropogenic pressures, and local pressures were collected for 67 reservoirs and 24 natural lakes throughout France. After assigning fish species into trophic, reproductive, and tolerance guilds, we derived a set of metrics reflecting complementary aspects of community functioning and condition. Other community-level traits such as richness and evenness were added. These metrics were modeled vs. natural environmental variables and pressures. Reference conditions at each site were then assessed using hindcasting modeling. Separate indices were eventually obtained for natural and artificial lakes by combining selected metrics. Fifteen out of 73 candidate fish metrics, covering all three groups of functional traits, displayed a significant response to anthropogenic pressures. After removal of the redundant traits, the final indices for natural lakes and reservoirs included three and six metrics, respectively. Agricultural-related impacts were prominent for reservoirs, whereas for natural lakes urban and local pressures displayed the most significant effects.

Selecting fish‐based metrics responding to human pressures in French natural lakes and reservoirs: towards the development of a fish‐based index (FBI) for French lakes

Launois L, Veslot J, Irz P, Argillier C. Selecting fish‐based metrics responding to human pressures in French natural lakes and reservoirs: towards the development of a fish‐based index (FBI) for French lakes. Ecology of Freshwater Fish 2011: 20: 120–132. © 2010 John Wiley &amp; Sons A/SAbstract – Fish‐based indices of biotic integrity have been developed for many lotic systems but remain scarce for lakes. The goal of this study was to assess the responses of lentic fish assemblages to anthropogenic pressures when environmental variability was controlled for and to compare them between French natural lakes and reservoirs. Environmental features, catchment‐scale anthropogenic descriptors and fish data were collected from 30 natural lakes and 59 reservoirs throughout France. Functional fish metrics were regressed against both anthropogenic variables and the natural environmental conditions. Our results show that fish assemblages are appropriate ecological indicators for both natural and artificial lakes. They underline the necessity to control for the environment when developing indices at broad geographical scales. The relevant metrics differ between natural lakes and reservoirs, which challenges the attempts to use natural systems as references to assess the ecological potential of artificial ones.

A fish-based biotic integrity index selection for rivers in Hechi Prefecture, Guangxi and their environmental quality assessment

This study aims to develop a multi-metric, fish-based Index of Biological Integrity (IBI) for assessing the environmental quality of rivers in Hechi Prefecture, Guangxi Province, South China. Data on fish assemblage were collected via electrofishing We screened 21 candidate metrics representing attributes of fish assemblage. Among these, six metrics were finally selected for the IBI. It was shown that the fish-based biological integrity was good in Xiaohuanjiang River , fair in Hongshuihe, Longjiang and Dahuanjiang Rivers, but poor in Diaojiang River. The results of assessment were consistent with the actual situation of human disturbance. The assessment system constructed by this study could be used or used for reference in the area around Hechi. Biotic integrity assessment was an important means of water environment quality monitoring. To enable the biotic integrity assessment more scientific and more objective, much more research work is required to focus on the relationship between biotic integrity and environmental factors.

Assessing the ecological status in species-poor systems: A fish-based index for Mediterranean Rivers (Guadiana River, SW Spain)

The assessment of the ecological status of freshwater ecosystems is a key issue for many international laws such as the Water Framework Directive (WFD) in light of the actual impoverished status of these ecosystems. Different multimetric approaches have been successfully developed in different freshwater environments. However, multimetric indices are difficult to apply to Mediterranean rivers basins, characterized by freshwater fish communities very low in species richness and support a high number of endemics with generalist and opportunistic life strategies. Here we follow a site-specific approach to develop an adaptation of the multimetric procedure usually used in Indices of Biotic Integrity (IBI), resulting in the Index of Community Integrity (ICI). We modeled the presence–absence of 10 native freshwater fish species from the Guadiana River basin using the Assessment of Nearest Neighbor Analyses (ANNA) model, to assess the deviation of the observed and expected community composition at reference condition. ANNA, which is a multi-species model, allowed incorporating in the index some rare species, though not all of them present in the basin. Deviations were transformed into probabilities of belonging to a reference site and species by species measures were then integrated in a final score. The use of presence–absence only data reduces potential errors associated with estimations of species’ abundance and its seasonal changes, which is especially important in Mediterranean environments. The ICI was sensitive to both habitat degradation and the degree of dominance of non-native species within the freshwater fish community (or biotic perturbation), which have been traditionally overlooked in IBIs, but was unresponsive to natural sources of variation. Given the site-specific nature and the simplicity of the index that we propose here, we expect it to be applicable to other Mediterranean basins for which predictive models can be produced.

A zone-specific fish-based biotic index as a management tool for the Zeeschelde estuary (Belgium)

Fish-based indices monitor changes in surface waters and are a valuable aid in communication by summarising complex information about the environment ( Harrison and Whitfield, 2004). A zone-specific fish-based multimetric estuarine index of biotic integrity (Z-EBI) was developed based on a 13 year time series of fish surveys from the Zeeschelde estuary (Belgium). Sites were pre-classified using indicators of anthropogenic impact. Metrics showing a monotone response with pressure classes were selected for further analysis. Thresholds for the good ecological potential (GEP) were defined from references. A modified trisection was applied for the other thresholds. The Z-EBI is defined by the average of the metric scores calculated over a one year period and translated into an ecological quality ratio (EQR). The indices integrate structural and functional qualities of the estuarine fish communities. The Z-EBI performances were successfully validated for habitat degradation in the various habitat zones.

Development of a fish-based index to assess the ecological quality of transitional waters: The case of French estuaries

The Water Framework Directive requires the assessment of the ecological status of transitional waters considering the fish component. An original methodology, based on a pressure-impact approach, was established to develop a multimetric fish-based index to characterize the ecological quality of French estuaries. An index of contamination, based on the chemical pollution affecting aquatic systems, was used as a proxy of anthropogenic pressure. The fish metric selection was based on their response to disturbances tested via statistical models (generalized linear models) taking into account sampling strategy and estuarine features. Four metrics, for which discriminating responses to level of pressure were demonstrated, were retained to constitute the estuarine multimetric fish index. This new tool appeared particularly relevant to detect the contamination effects on fish communities in estuaries. It could help managers to take decisions in order to maintain or reach the good status required by the Water Framework Directive for 2015.

Selecting fish-based metrics responding to human pressures in French natural lakes and reservoirs: towards the development of a fish-based index (FBI) for French lakes

Selecting fish-based metrics responding to human pressures in French natural lakes and reservoirs: towards the development of a fish-based index (FBI) for French lakes

Assessment of the ecological status of coastal areas and estuaries in France, using multiple fish-based indicators: a comparative analysis on the Vilaine estuary

When reviewing the various fish-based community indicators aiming at assessing the ecological status of marine communities and/or ecosystems, a typology consisting of three major components emerges. The first component highlights the choice of relevant metrics associated with a level of organization (e.g. population or community). The second relies on the method used to combine the metrics (an aggregated indicator or a synoptic table). The third refers to the type of analysis (direct or indirect) that is used to establish the link between the metrics and a given pressure. In this paper we use the Vilaine coastal-estuarine fish communities as a case study to discuss and relate two different approaches to the suggested typology. The first approach (time-trend approach) is based on historical series of data, whereas the second approach (multi-metric index, MMI) is based on a geographic series including various French estuaries. They were developed or adapted from French studies but are representative of the approaches used in Europe. When applied to the case study, they differed in their diagnosis: the time-trend approach indicated that the bay of Vilaine habitat was deteriorating, whereas the MMI, which compares many French estuaries, indicated a good environmental state. Differences and complementarities between the approaches are thoroughly discussed with respect to the three mains components of the typology. This work appears at a particular moment, when several fish-based indicators are being developed in France and the rest of Europe. It intends to serve as an element of the ongoing reflection concerning the limitations of the various approaches that can be used to develop such indicators.

The bioassessment of fish and macroinvertebrates in a Mediterranean–Atlantic climate: Habitat assessment and concordance between contrasting ecological samples

Abstract Human intervention and drought conditions in Mediterranean rivers may necessitate the collection of organisms from a different habitat type to that specified by the original bioassessment protocol; it is therefore critical to understand the consequences of adaptive sampling strategies in these lotic systems. In a survey of 31 streams (2nd–4th order) in northern Portugal we collected separate macroinvertebrate samples from running-water and standing-water habitats and fish samples from a delineated reach, inclusive of all habitat types. In addition to collecting habitat data specific to macroinvertebrates and fish we conducted a generalized River Habitat Survey (RHS) and derived scores designed to report habitat quality and habitat degradation. Ecological data were described in terms of taxonomic structure, functional organization and by biotic indices and interpreted in relation to habitat data, comparing samples within and between sites for concordance. Macroinvertebrates from respective habitats differed in their relationship with habitat variable with running-water samples more strongly related to substrate and water quality and standing-water samples more strongly reflecting habitat characteristics at the reach scale. Running- and standing-water samples from the same-site varied widely, indicating that substituting standing-water for running-water samples in macroinvertebrate-based bioassessment carries a high risk of misclassification. However, a consistent bias in index scores suggests that a habitat-adjusted interpretation of biotic indices could be employed to improve measurement precision. Variation in key parameters of the fish community corresponded to changes in water quality and habitat structure and to reach-scale features recorded by the RHS. Trends between macroinvertebrate and fish measurements indicated common patterns for oxygen/flow sensitive taxa and for trophic organization that were related to similar habitat preferences. Whilst macroinvertebrates demonstrated no relationship with derived scores of habitat quality, the fish-based Index of well-being (Iwb) was strongly related to the Habitat Modification Score. Overall these data indicate how different ecological samples can be used to focus on different aspects of habitat quality and are suggestive of strategies for both the collection and interpretation of ecological data that would improve assessment performance. This study emphasizes the need to adapt assessment methods not only to the species pool but also to the differences in the managed and natural habitat characteristics of these types of Mediterranean streams.

Assessing estuarine environmental quality using fish-based indices: Performance evaluation under climatic instability

The seasonal variation of five selected multimetric indices for the determination of the Ecological Quality Status (EQS) of transitional waters was evaluated, as well as the indices’ responses to an extreme drought event that occurred in 2005. The database used regards the Mondego River estuary, which was sampled from June 2003 to August 2006 on a monthly basis. Among the selected indices (EBI – Deegan et al. [Deegan, L., Finn, J.T., Ayvazlan, S.G., Ryder-Kieffer, C.A., Buonaccoesi, J., 1997. Development and validation of an Estuarine Biotic Integrity Index. Estuaries 30(3), 601–617], EDI – Borja et al. [Borja, A., Franco, J., Valencia, V., Bald, J., Muxika, I., Belzunce, M.J., Solaun, O., 2004. Implementation of the European Water Framework Directive from the Basque Country (northern Spain): a methodological approach. Marine Pollution Bulletin 48(3–4), 209–218], EFCI – Harrison and Whitfield [Harrison, T.D., Whitfield, A.K., 2004. A multi-metric fish index to assess the environmental condition of estuaries. Journal of Fish Biology 65, 683–710], EBI – Breine et al. [Breine, J.J., Maes, J., Quataert, P., Van den Bergh, E., Simoens, I., Van Thuyne, G., Belpaire, C., 2007. A fish-based assessment tool for the ecological quality of the brackish Scheldt estuary in Flanders (Belgium). Hydrobiologia 575, 141–159] and TFCI – Coates et al. [Coates, S., Waugh, A., Anwar, A., Robson, M., 2007. Efficacy of a multi-metric fish index as an analysis tool for the transitional fish component of the Water Framework Directive. Marine Pollution Bulletin 55, 225–240]), the EBI by Breine et al. (2007) was the only that evidenced clear interannual and seasonal variations. The EQS by the several indices ranged from “Low” to “High”, depending on the index considered, evidencing the high level of mismatch between indices. The results are discussed in the scope of the EU Water Framework Directive, regarding monitoring strategies, application of indices and EQS assessment.

Prioritization of fish assemblages with a view to conservation and restoration on a large scale European basin, the Loire (France)

The hierarchical organization of important sites for the conservation or the restoration of fish communities is a great challenge for managers, especially because of financial or time constraints. In this perspective, we developed a methodology, which is easy to implement in different locations. Based on the fish assemblage characteristics of the Loire basin (France), we created a synthetic conservation value index including the rarity, the conservation status and the species origin. The relationship between this new synthetic index and the Fish-Based Index allowed us to establish a classification protocol of the sites along the Loire including fish assemblages to be restored or conserved. Sites presenting disturbed fish assemblages, a low rarity index, few threatened species, and a high proportion of non-native species were considered as important for the restoration of fish biodiversity. These sites were found mainly in areas where the assemblages are typical of the bream zone, e.g. with a higher number of eurytopic and limnophilic species. On the contrary, important sites for conservation were defined as having an important conservation potential (high RI, a lot of threatened species, and few non-natives fish species) and an undisturbed fish assemblage similar to the expected community if habitats are undisturbed. Important sites for conservation were found in the Loire basin’s medium reaches which host assemblages typical for the grayling and the barbell zones, e.g. with a higher number of rheophilic species. The synthetic conservation value index could be adapted and completed with other criteria according to management priorities and capacities.

Controlling for natural variability in assessing the response of fish metrics to human pressures for lakes in north‐east USA

1. While fish-based Indices of Biotic Integrity (IBIs) have been developed for a wide array of lotic systems, equivalent tools have seldom been adapted to the monitoring and assessment of lakes. Major difficulties arise in such work: (i) collecting data that allow statistically robust analyses, (ii) choosing the relevant variables to describe the biotic, environmental and anthropogenic data sets and (iii) assessing the relative importance of the latter two in explaining the former. The aim of the present paper is to produce such an assessment for the fish communities of the lakes of north-east USA. 2. Fish surveys, environmental features and catchment-scale descriptors of human stresses (agricultural and urban land-uses) were collected for 112 natural lakes. 3. Fish metrics, i.e. species richness and percentages of species belonging to reproductive, trophic, and tolerance guilds, were regressed against anthropogenic variables, then against anthropogenic variables and the natural environmental conditions. 4. It was shown that failing to control for the natural environmental conditions in the IBI construction led to selecting metrics (percentage of intolerant species and percentage of omnivorous species) that did not display response to stresses when the environment was controlled for. Moreover, controlling for natural variability of the metrics allowed identifying the impact of agricultural land-use on the percentage of diadromous species. 5. Fish communities appear valuable for the bioassessment of lakes. Appropriate statistical methods have proved that the natural variability in the bioassessment tools could be accounted for, thereby allowing assessments at the scale of multiple basins and ecoregions. This opens new perspectives for the development of IBIs for lentic systems in lake-poor regions, such as southern Europe, and therefore represents a significant contribution to the implementation of the European Water Framework Directive. Copyright © 2007 John Wiley & Sons, Ltd.

Response of Fish and Macroinvertebrate Bioassessment Indices to Water Chemistry in a Mined Appalachian Watershed

Multimetric indices based on fish and benthic macroinvertebrate assemblages are commonly used to assess the biological integrity of aquatic ecosystems. However, their response to specific stressors is rarely known. We quantified the response of a fish-based index (Mid-Atlantic Highlands Index of Biotic Integrity, MAH-IBI) and a benthic invertebrate-based index (West Virginia Stream Condition Index, WV-SCI) to acid mine drainage (AMD)-related stressors in 46 stream sites within the Cheat River watershed, West Virginia. We also identified specific stressor concentrations at which biological impairment was always or never observed. Water chemistry was extremely variable among tributaries of the Cheat River, and the WV-SCI was highly responsive across a range of AMD stressor levels. Furthermore, impairment to macroinvertebrate communities was observed at relatively low stressor concentrations, especially when compared to state water quality standards. In contrast to the WV-SCI, we found that the MAH-IBI was significantly less responsive to local water quality conditions. Low fish diversity was observed in several streams that possessed relatively good water quality. This pattern was especially pronounced in highly degraded subwatersheds, suggesting that regional conditions may have a strong influence on fish assemblages in this system. Our results indicate that biomonitoring programs in mined watersheds should include both benthic invertebrates, which are consistent indicators of local conditions, and fishes, which may be indicators of regional conditions. In addition, remediation programs must address the full suite of chemical constituents in AMD and focus on improving linkages among streams within drainage networks to ensure recovery of invertebrate and fish assemblages. Future research should identify the precise chemical conditions necessary to maintain biological integrity in mined Appalachian watersheds.