Ferromanganese (FeMn) nodules composed of nano-sized FeMn (oxyhydr)oxides are significant mineral resources rich in multiple critical metals (e.g., Co, Ni, Cu, and REY). The ubiquitous high porosity, large pore size, and pore connectivity in hydrogenetic nodules enable the constant influx of seawater and/or porewater driving widespread diagenetic processes (i.e., mineral dissolution and recrystallization) in the abundant fractures and pores. These diagenetic processes are critical to understanding the migration, partitioning, and distribution of the critical metals, but remain unclear yet. In this study, high-resolution in-situ analyses were conducted to investigate the mineralogical and geochemical characteristics of diagenetic precipitates in fractures and pores of a hydrogenetic FeMn nodule (MP5D33) from the central Pacific. Both oxic and suboxic processes were found in the fracture. The oxidized diagenetic products exhibit geochemical and mineralogical characteristics similar to thoese of hydrogenetic precipitates (e.g., vernadite), while the suboxic diagenetic processes primarily produced large-size 10 Å phyllomanganate. The diagenetic conditions within this studied fracture gradually shifted from oxic to suboxic, causing changes in the contents of multiple critical metals. The minerals in pores are mainly composed of 10 Å phyllomanganate that crystallized forms through heterogeneous nucleation on small-size vernadite in a suboxic environment. Additionally, minor todorokite likely transformed from 10 Å phyllomanganate undergoing long-term diagenesis. These findings shed some insights into the diagenetic process in the interior fractures and/or pores of FeMn nodules and enhance the understanding of the migration of critical elements associated with FeMn (oxyhydr)oxides during diagenesis in FeMn deposits.