Cattle Research Articles

A mixture of free and microencapsulated essential oils combined with turmeric and tannin in the diet of cattle in the growing and finishing phase: A new tool to enhance productivity

The study was conducted to evaluate whether adding a blend containing free and microencapsulated essential oils, combined with turmeric and tannin, can replace monensin as a performance improver, positively influencing animal health and meat quality. Fourteen male cattle with an average initial body weight of 253 kg and ten females with an average initial body weight of 239 kg were included in the experiment in a confinement system. The animals were divided into four independent groups: Males (M-PHYTO, inclusion of the phytogenic mixture; M-MONEN, inclusion of monensin); Females (F-PHYTO, inclusion of phytogenic; F-MONEN, inclusion of monensin). The diets were formulated for an average daily gain of 1.5 kg, with food provided twice daily. Data and biological samples were collected on days 33, 100, and 153. M-PHYTO and F-PHYTO showed greater average daily gain and body weight, with a tendency to consume more dry matter and feed efficiency. However, the apparent digestibility of nutrients was higher in animals in the MONEN group than those in the PHYTO group, regardless of sex. The total number of leukocytes in cattle in the M-PHYTO and F-PHYTO groups was higher due to the higher lymphocyte count in the blood of these animals. The activity of gamma-glutamyltransferase and aspartate aminotransferase in animals that consumed the phytogenic mixture was lower compared to animals that consumed monensin. TBARS levels were lower in the serum and meat of cattle in the M-PHYTO and F-PHYTO groups, as were the total thiol concentration and glutathione S-transferase activity in the blood and meat of these animals. Bacterial activity was greater in the rumen fluid of cattle that consumed the phytogenic, as demonstrated by the methylene blue reduction test. The total production of short-chain fatty acids and acetic acid showed an interaction between treatment and days for both sex classes and an effect of treatment for females, with a higher concentration in the rumen in the M-PHYTO and F-PHYTO groups. Propionic acid affected treatment and the treatment x day interaction for males and females, with the M-PHYTO and F-PHYTO groups showing higher concentrations. There was an interaction between treatment and day in the acetate/propionate ratio, being lower in M-PHYTO and F-PHYTO cattle. Treatment between ruminal microbiota groups had no effect. The rib eye area had more significant gains when consumed phytogenic by males and females. The subcutaneous and sirloin fat thickness was greater in F-PHYTO animals than in the control group; however, in males, the result was the opposite. The sum of polyunsaturated fatty acids in meat was higher in M-PHYTO compared to M-MONEN and lower in F-PHYTO meat compared to F-MONEN. These results indicate that the phytogenic mixture is a potential performance improver in the diet of growing and finishing cattle, regardless of sex, but meat characteristics differ between males and females.

First detection of Tetraparvovirus ungulate 1 in diseased cattle (Chinese Simmental) from Hunan province, China

Tetraparvovirus is an emerging parvovirus infecting a variety of mammals and humans, and associated with human diseases including severe acute respiratory infection and acute encephalitis syndrome. In the present study, a Tetraparvovirus ungulate 1 (formerly known as bovine hokovirus) strain HNU-CBY-2023 was identified and characterized from diseased Chinese Simmental from Hunan province, China. The nearly complete genome of HNU-CBY-2023 is 5346 nt in size and showed genomic identities of 85-95.5% to the known Tetraparvovirus ungulate 1 strains from GenBank, indicating a rather genetic variation. Phylogenetic and genetic divergence analyses indicated that Tetraparvovirus ungulate 1 could be divided into two genotypes (I and II), and HNU-CBY-2023 was clustered into genotype II. This study, for the first time, identified Tetraparvovirus ungulate 1 from domestic cattle from mainland China, which will be helpful to understand the prevalence and genetic diversity of Tetraparvovirus ungulate 1.

Analysing the Impact of Age, Body Condition, Scrotum Circumference Testicular Size and Hormone Levels in Pre-Pubertal Kundhi Buffalo Bull Calves

: This study investigates and compares the physiological and behavioral characteristics of Kundhi buffalo bull calves focusing on the impact of age and size. Ten bull calves, aged between 14 to 18 months were selected and categorized into two groups: Group A: young (up to 14 months), with 210kg average body weight, and Group B: smaller (up to 18 months) with 305kg average body weight. The body weight of Kundhi buffalo calves linearly increased from the 1st to the 7th fortnight, with significant differences (p<0.05) observed between the two groups. The final body weight was higher in Group B (344.72 kg) when compared to Group A (262.04 kg). Similarly, scrotal circumference, girth, and length exhibited linear increases throughout the experiment with significant differences between the groups (p<0.05). Group B consistently showed larger scrotal circumferences (21.96 cm), girths (66.28 cm), and lengths (51.54 cm) compared to Group A (18.38 cm, 60.36 cm, and 47.44 cm, respectively). While testosterone and estradiol concentrations were non-significant (p>0.05) between the groups, they were higher in Group B (0.1504 ng/ml and 2.4724 pg/ml) than in Group A (0.1082 ng/ml and 2.2724 pg/ml). Behavioral observations, including nuzzling, sniffing, licking, bellowing, protrusion, and mounting, indicated higher scores in Group B. In both groups, mean nuzzling scores were (3.71 and 5.00), sniffing (0.28 and 1.28), licking (3.14 and 4.14), bellowing (0.85 and 2.14), protrusion (0.00 and 0.42), and mounting (0.00 and 1.28) in the "yes" category. These findings offer comprehensive insights into the physiological and behavioral differences influenced by age and size in Kundhi buffalo bull calves.

Exploring the Interplay between the Hologenome and Complex Traits in Bovine and Porcine Animals Using Genome-Wide Association Analysis.

Genome-wide association studies (GWAS) significantly enhance our ability to identify trait-associated genomic variants by considering the host genome. Moreover, the hologenome refers to the host organism's collective genetic material and its associated microbiome. In this study, we utilized the hologenome framework, called Hologenome-wide association studies (HWAS), to dissect the architecture of complex traits, including milk yield, methane emissions, rumen physiology in cattle, and gut microbial composition in pigs. We employed four statistical models: (1) GWAS, (2) Microbial GWAS (M-GWAS), (3) HWAS-CG (hologenome interaction estimated using COvariance between Random Effects Genome-based restricted maximum likelihood (CORE-GREML)), and (4) HWAS-H (hologenome interaction estimated using the Hadamard product method). We applied Bonferroni correction to interpret the significant associations in the complex traits. The GWAS and M-GWAS detected one and sixteen significant SNPs for milk yield traits, respectively, whereas the HWAS-CG and HWAS-H each identified eight SNPs. Moreover, HWAS-CG revealed four, and the remaining models identified three SNPs each for methane emissions traits. The GWAS and HWAS-CG detected one and three SNPs for rumen physiology traits, respectively. For the pigs' gut microbial composition traits, the GWAS, M-GWAS, HWAS-CG, and HWAS-H identified 14, 16, 13, and 12 SNPs, respectively. We further explored these associations through SNP annotation and by analyzing biological processes and functional pathways. Additionally, we integrated our GWA results with expression quantitative trait locus (eQTL) data using transcriptome-wide association studies (TWAS) and summary-based Mendelian randomization (SMR) methods for a more comprehensive understanding of SNP-trait associations. Our study revealed hologenomic variability in agriculturally important traits, enhancing our understanding of host-microbiome interactions.

In-depth exploration of the high and normal pH beef proteome: First insights emphasizing the dynamic protein changes in Longissimus thoracis muscle from pasture-finished Nellore bulls over different postmortem times

This study aimed to evaluate for the first time the temporal dynamic changes in early postmortem proteome of normal and high ultimate pH (pHu) beef samples from the same cattle using a shotgun proteomics approach. Ten selected carcasses classified as normal (pHu < 5.8; n = 5) or high (pHu ≥ 6.2; n = 5) pHu beef from pasture-finished Nellore (Bos taurus indicus) bulls were sampled from Longissimus thoracis muscle at 30 min, 9 h and 44 h postmortem for proteome comparison. The temporal proteomics profiling quantified 863 proteins, from which 251 were differentially abundant (DAPs) between high and normal pHu at 30 min (n = 33), 9 h (n = 181) and 44 h (n = 37). Among the myriad interconnected pathways regulating pH decline during postmortem metabolism, this study revealed the pivotal role of energy metabolism, cellular response to stress, oxidoreductase activity and muscle system process pathways throughout the early postmortem. Twenty-three proteins overlap among postmortem times and may be suggested as candidate biomarkers to the dark-cutting condition development. The study further evidenced for the first time the central role of ribosomal proteins and histones in the first minutes after animal bleeding. Moreover, this study revealed the disparity in the mechanisms underpinning the development of dark-cutting beef condition among postmortem times, emphasizing multiple dynamic changes in the muscle proteome. Therefore, this study revealed important insights regarding the temporal dynamic changes that occur in early postmortem of high and normal muscle pHu beef, proposing specific pathways to determine the biological mechanisms behind dark-cutting determination.

Bacteria colonization and gene expression related to immune function in colon mucosa is associated with growth in neonatal calves regardless of live yeast supplementation

BackgroundAs Holstein calves are susceptible to gastrointestinal disorders during the first week of life, understanding how intestinal immune function develops in neonatal calves is important to promote better intestinal health. Feeding probiotics in early life may contribute to host intestinal health by facilitating beneficial bacteria colonization and developing intestinal immune function. The objective of this study was to characterize the impact of early life yeast supplementation and growth on colon mucosa-attached bacteria and host immune function.ResultsTwenty Holstein bull calves received no supplementation (CON) or Saccharomyces cerevisiae boulardii (SCB) from birth to 5 d of life. Colon tissue biopsies were taken within 2 h of life (D0) before the first colostrum feeding and 3 h after the morning feeding at d 5 of age (D5) to analyze mucosa-attached bacteria and colon transcriptome. Metagenome sequencing showed that there was no difference in α and β diversity of mucosa-attached bacteria between day and treatment, but bacteria related to diarrhea were more abundant in the colon mucosa on D0 compared to D5. In addition, qPCR indicated that the absolute abundance of Escherichia coli (E. coli) decreased in the colon mucosa on D5 compared to D0; however, that of Bifidobacterium, Lactobacillus, and Faecalibacterium prausnitzii, which could competitively exclude E. coli, increased in the colon mucosa on D5 compared to D0. RNA-sequencing showed that there were no differentially expressed genes between CON and SCB, but suggested that pathways related to viral infection such as “Interferon Signaling” were activated in the colon mucosa of D5 compared to D0.ConclusionsGrowth affected mucosa-attached bacteria and host immune function in the colon mucosa during the first 5 d of life in dairy calves independently of SCB supplementation. During early life, opportunistic pathogens may decrease due to intestinal environmental changes by beneficial bacteria and/or host immune function. Predicted activation of immune function-related pathways may be the result of host immune function development or suggest other antigens in the intestine during early life. Further studies focusing on the other antigens and host immune function in the colon mucosa are required to better understand intestinal immune function development.

GROWTH RATE OF BODY LENGTH AND HEIGHT OF MALE BALI CATTLE DURING FATTENING

Each organ, tissue, or body part of balinese cattle in each phase has a different speed or growth rate. The growth rate of the animal's body can be known based on the growth pattern of each body size. This study aims to determine the growth rate of male balinese cattle during fattening. The research sample used was 20 male balinese cattle from Abdi Pertiwi Livestock Farmer Group, Gerokgak, Buleleng, Bali. This study used purposive sampling method and data collection was done with saturated sampling technique. Measurements were taken once a month with three measurements as replicates for three months. The data obtained were analyzed by power regression with the equation model used is Y = aXb. The results of the power regression analysis showed a significant difference (p&lt;0.05) in each growth rate of body length and height of male balinese cattle. The highest growth rate or has the greatest growth potential is head length, followed by neck length, body length, hip height, and shoulder height. Based on the results obtained, it can be concluded that there are significant differences in the growth rate of body length and height of male balinese cattle during fattening. Further research needs to be conducted on the growth rate of body length and height of male balinese cattle until the time the cattle are slaughtered, so that it can be known with the help of a researcher.

PREVALENCE AND INTENSITY OF GASTROINTESTINAL PROTOZOAN INFECTION IN BALINESE CATTLE CALVES AT BERINGKIT ANIMAL MARKET, BADUNG REGENCY

Bali cattle are one of the indigenous cattle breeds in Indonesia that are the direct result of domestication from wild bulls. Gastrointestinal protozoan infection is still a factor that often disturbs the health of bali cattle. This study aimed to determine the prevalence and intensity of gastrointestinal protozoa infection in bali calves breeds in Beringkit Animal Market, Badung Regency. The examination was conducted using the floating method, with fecal samples from 100 bali cattle seedlings and the Mc Master method to determine protozoan infection. The results found 41% of the samples were infected with gastrointestinal protozoa. Based on gender, the prevalence of gastrointestinal protozoa infection in male bali calves was 41.1% and in female bali calves was 40.9%. The types of gastrointestinal protozoa found were Eimeria sp, and Balantidium sp. The average infection intensity of Eimeria sp, 36% with an infection intensity of 622.5 ± 2359.21 oocysts/gram of feces, and Balantidium sp, 17% with an infection intensity of 58.82 ± 75.99 cysts/gram of feces. The prevalence in this study was moderate. Male and female cattle have the same chance of being infected with gastrointestinal protozoa. The average infection intensity of Eimeria sp, and Balantidium sp, both protozoa were mild. It is recommended to improve environmental sanitation around bali breeding calves, routine feces cleaning and hygienic feeding methods

Comparison of CellRox green fluorescence upon thawing on in vitro Bos taurus and Bos indicus embryos cryopreserved by slow freezing or vitrification.

The aim of this study was to compare the levels of reactive oxygen species (ROS) in Bos taurus and Bos indicus in vitro embryos cryopreserved using either slow freezing or vitrification. Embryos were divided into four groups based on subspecies and freezing method: Bos indicus slow freezing (BiSF; n = 8), Bos indicus vitrification (BiVT; n = 10), Bos taurus slow freezing (BtSF; n = 9), and Bos taurus vitrification (BtVT; n = 6). After thawing, the embryos were incubated with CellRox Green and images were obtained using a confocal microscope. The fluorescence intensity of each cell was measured and expressed as arbitrary units of fluorescence (auf) and compared using a multiple regression and unpaired t-test with α = 0.05. Results showed that subspecies and the freezing method significantly affected auf (P < 0.001; R2 = 0.1213). Bos indicus embryos had higher auf than Bos taurus embryos, whether frozen by slow freezing (67.05 ± 23.18 vs 51.30 ± 16.84, P < 0.001) or vitrification (64.44 ± 23.32 vs 47.86 ± 17.53, P < 0.001). Slow freezing induced higher auf than vitrification in both Bos taurus (51.30 ± 16.84 vs 47.86 ± 17.53, P < 0.001) and Bos indicus (67.05 ± 23.18 vs 64.44 ± 23.32, P < 0.014). In conclusion, Bos taurus embryos had lower ROS levels when frozen using vitrification, while Bos indicus embryos had consistent ROS patterns regardless of the freezing method. However, Bos indicus embryos frozen by slow freezing tended to have a higher number of cells with elevated ROS levels.

Effects of cattle grazing on young spruce trees in boreal production forest

The compatibility of forest livestock grazing with timber production is disputed, as livestock can damage young trees through browsing and trampling. At the same time, livestock grazing might reduce the growth of competing vegetation and thereby enhance conifer forest regeneration. We investigated the effects of cattle (Bos taurus) on young spruce (Picea abies) trees in boreal production forest. We compared data from young spruce plantations within and outside of the grazing area, and during and off the cattle grazing season. Overall, stocking rates were 0.01 cows per hectare across the grazing areas. Cattle did not distribute equally, but concentrated their area use to young spruce plantations, leading to locally high densities during periods of the grazing season. Cattle removed vegetation competing with young spruce trees: Within the grazing area, the sward height of the field layer vegetation was lower, and young willow (Salix spec.) and downy birch (Betula pubescens) trees were browsed more than outside the grazing area. The annual height growth of spruce increased once the spruce grew above sward height. Spruce trees surrounded by many competing trees grew slower than those surrounded by few trees. Bent spruce trees grew slower than undamaged spruce trees. Yet, no difference in annual spruce growth was found between inside and outside the cattle grazing area. In contrast, we found a higher spruce mortality risk inside than outside the cattle grazing area. This mortality risk was very low and positively correlated with a given spruce tree's bark being damaged. Cattle did not increase the risk of damaged stem bark. This study did not succeed in pointing out the mechanism by which cattle might increase spruce mortality risk. Interestingly, the probability of being browsed and the probability of being bent were higher after winter than after summer, indicating that wild ungulates and snow might have a stronger effect on young spruce trees than summer grazing cattle at these stocking rates. In conclusion, cattle had minor effects on young spruce trees. This study suggests that at low stocking rates, forestry and livestock production in boreal production systems are compatible.

Nilgai antelope display no signs of infection upon experimental challenge with a virulent Babesia bovis strain

BackgroundBovine babesiosis is caused by infection with the protozoal parasite Babesia bovis, which is transmitted by Rhipicephalus (Boophilus) spp. It can cause mortality rates up to 90% in immunologically naive Bos taurus cattle. In south Texas, R. (B.) microplus is known to infest nilgai antelope (Boselaphus tragocamelus); however, their susceptibility to infection with B. bovis and their role in the transmission of the parasite remain unknown. In this study, we challenged nilgai antelope with B. bovis and evaluated their susceptibility to infection.MethodsNilgai were needle inoculated with ≈108B. bovis-parasitized erythrocytes (merozoites) or a homogenate of B. bovis-infected larval ticks (sporozoite) delivered intravenously. Bos taurus beef calves were inoculated in parallel, as this strain of B. bovis is lethal to cattle. Temperature and hematocrit were monitored daily over the course of each study, and whole blood was collected for molecular [polymerase chain reaction (PCR)] and serological [indirect enzyme-linked immunosorbent assay (ELISA)] diagnostic evaluation. Histological sections of nilgai cerebral tissue were examined for evidence of infection. Recipient bovine calves were sub-inoculated with blood from nilgai challenged with either stage of the parasite, and they were monitored for clinical signs of infection and evaluated by a PCR diagnostic assay. Red blood cells (RBCs) from prechallenged nilgai and B. taurus beef cattle were cultured with an in vitro B. bovis merozoite culture to examine colonization of the RBCs by the parasite.ResultsNilgai did not display clinical signs of infection upon inoculation with either the merozoite or sporozoite stage of B. bovis. All nilgai were PCR-negative for the parasite, and they did not develop antibodies to B. bovis. No evidence of infection was detected in histological sections of nilgai tissues, and in vitro culture analysis indicated that the nilgai RBCs were not colonized by B. bovis merozoites. Cattle subinoculated with blood from challenged nilgai did not display clinical signs of infection, and they were PCR-negative up to 45 days after transfer.ConclusionsNilgai do not appear to be susceptible to infection with a strain of B. bovis that is lethal to cattle. Tick control on these alternative hosts remains a critical priority, especially given their potential to disseminate ticks over long distances.Graphical

Optimizing Ongole Grade Cattle weight prediction through Principal Component Analysis

Abstract Ongole Grade (OG) cattle are commonly raised by many farmers in Indonesia, particularly in rural and remote areas where weighing scales are not readily available. The weight of these OG cattle can be estimated by utilizing their body measurements through the application of Principal Component Analysis (PCA). This research aimed to predict the body weight (BW) of OG cattle, which are primarily kept by smallholder farmers, using PCA based on various body measurements such as body length (BL), chest girth (CG), shoulder height (SH), and chest width (CW). Additionally, the effectiveness of PCA-based predictions was compared with a multiple linear regression model. This study involved a total of 120 OG cattle, comprising 26 males and 94 females. The PCA of the body measurements, as well as the correlation and regression between these measurements (BL, CG, SH, and CW) and BW, were analyzed using the R programming language. The selection criteria for identifying the best-fit model for BW prediction were based on statistical indicators including coefficient of determination (R2), Adjusted R2, residual standard error (RSE), Akaike Information Criterion (AIC), and Bayesian Information Criterion (BIC). The findings of this investigation revealed that the primary factors representing body measurements were PC1 for both male (accounting for 89.21% variance) and female OG cattle (accounting for 85.71% variance). In comparison to the regression models, those generated from three PCs for males and two PCs for females demonstrated greater precision and simplicity in estimating the BW of OG cattle, without encountering multicollinearity issues. Consequently, the outcomes of this study have practical applications, serving as a means to predict the BW of OG cattle and contributing to selection programs within this cattle breed.

Early animal management in northern Europe: multi-proxy evidence from Swifterbant, the Netherlands

The nature and timing of the transition to farming north of the Linearbandkeramik zone in Europe is the subject of much debate, but our understanding of this fundamental shift in lifeways is hampered by the low resolution of available data. This article presents new multi-proxy evidence from Swifterbant (4240–4050 BC), in the Dutch wetlands, for morphologically domestic cattle with two different dietary regimes. The authors argue that the results indicate early animal management, alongside arable farming and the continuance of foraging practices, prompting the reconsideration away from broad statements about the Neolithic north of the Linearbandkeramik zone towards more local trajectories.

Sero-epidemiological study of brucellosis in cattle under pastoral/agro-pastoral and mixed crop-livestock systems in South Omo, southern Ethiopia

BackgroundIn the pastoral/agro-pastoral communities in Ethiopia, like in South Omo, brucellosis constitutes a serious health threat for livestock and the public. The public health risk is especially high in these communities, as their way of life is highly linked with their herds. ObjectiveThe study was conducted to estimate the seroprevalence and identify potential risk factors of cattle brucellosis in South Omo zone in southern Ethiopia. MethodsA total of 614 traditionally managed local zebu female cattle, above six months old, were bled and data on hypothesized risk factors were collected using a semi-structured questionnaire. The preliminary screening of the sera for Brucella antibodies was done using Rose Bengal Plate Test (RBPT) and positive sera were further subjected to complement fixation test (CFT). ResultsThe overall animal level seroprevalence of brucellosis was 2.8 % (95 % CI: 1.72–4.41) while herd level prevalence was 11.3 % (95 % CI: 6.5–19.0). Among the risk factors considered, seroprevalence was associated with herd size, new animal introduction, district, history of occurrence of abortion, and retained fetal membranes (RFM), at both individual- and herd-level (p < 0.05). Higher seroprevalence of brucellosis was observed in cows than heifers and in animals older than 4 years (p < 0.05). Brucella seroprevalence was higher in herds in lowland areas than those in mid-altitude and highlands (p < 0.05). ConclusionThe individual and herd level prevalence observed in our study indicates endemicity of brucellosis and the potential public health threat it poses in pastoral and agro-pastoral areas of southern Ethiopia. The results of the study also suggest that the disease might be responsible for significant losses in cattle productivity due to impaired reproductive performance.

Performance and Export Competitiveness of Meat Exports from India

The study analyses the export performance of meat products between 2000-2021. Revealed symmetric comparative advantage (RSCA) and Revealed Competitiveness (RC) were used for analysis. India consistently had RSCA for meat exports between 2010 and 2021. For frozen bovine meat, India had RSCA during the entire duration. RSCA was witnessed for eight and six years for sheep-goat meat and edible offal, respectively. For chilled/fresh meat of bovine animals, India had RSCA only for one year. In the remaining categories, there was rarely any RSCA. India had strong Revealed Competitiveness in exporting meat products. The study recommended stringent quality measures to be followed for buffalo meat exports. Society should be educated regarding the difference between beef and carabeef. The exportable surplus of goat meat should be increased.

Efficient small fragment sequencing of human, cow, and bison miRNA, small RNA or csRNA-seq libraries using AVITI.

Next-Generation Sequencing (NGS) catalyzed breakthroughs across various scientific domains. Illumina's sequencing by synthesis method has long been essential for NGS but emerging technologies like Element Biosciences' sequencing by avidity (AVITI) represent a novel approach. It has been reported that AVITI offers improved signal-to-noise ratios and cost reductions. However, the method relies on rolling circle amplification which can be impacted by polymer size, raising questions about its efficacy sequencing small RNAs (sRNA) molecules including microRNAs (miRNAs), piwi-interacting RNAs (piRNAs), and others that are crucial regulators of gene expression and involved in various biological processes. In addition, capturing capped small RNAs (csRNA-seq) has emerged as a powerful method to map active or "nascent" RNA polymerase II transcription initiation in tissues and clinical samples. Here, we report a new protocol for seamlessly sequencing short DNA fragments on the AVITI and demonstrate that AVITI and Illumina sequencing technologies equivalently capture human, cattle (Bos taurus) and the bison (Bison bison) sRNA or csRNA sequencing libraries, augmenting the confidence in both approaches. Additionally, analysis of generated nascent transcription start sites (TSSs) data for cattle and bison revealed inaccuracies in their current genome annotations and highlighted the possibility and need to translate small RNA sequencing methodologies to livestock. Our accelerated and optimized protocol therefore bridges the advantages of AVITI sequencing and critical methods that rely on sequencing short DNA fragments.

A Comparative Full-Length Transcriptome Analysis Using Oxford Nanopore Technologies (ONT) in Four Tissues of Bovine Origin.

The transcriptome complexity and splicing patterns in male and female cattle are ambiguous, presenting a substantial obstacle to genomic selection programs that seek to improve productivity, disease resistance, and reproduction in cattle. A comparative transcriptomic analysis using Oxford Nanopore Technologies (ONT) was conducted in bovine testes (TESTs), ovaries (OVAs), muscles (MUSCs), and livers (LIVs). An average of 5,144,769 full-length reads were obtained from each sample. The TESTs were found to have the greatest number of alternative polyadenylation (APA) events involved in processes such as sperm flagellum development and fertilization in male reproduction. In total, 438 differentially expressed transcripts (DETs) were identified in the LIVs in a comparison of females vs. males, and 214 DETs were identified in the MUSCs between females and males. Additionally, 14,735, 36,347, and 33,885 DETs were detected in MUSC vs. LIV, MUSC vs. TEST, and OVA vs. TEST comparisons, respectively, revealing the complexity of the TEST. Gene Set Enrichment Analysis (GSEA) showed that these DETs were mainly involved in the "spermatogenesis", "flagellated sperm motility", "spermatid development", "reproduction", "reproductive process", and "microtubule-based movement" KEGG pathways. Additional studies are necessary to further characterize the transcriptome in different cell types, developmental stages, and physiological conditions in bovines and ascertain the functions of the novel transcripts.

Supplementation of Sakura Block Plus in Beef Cattle Fed with Palm Fronds and Its Effect on Nutrient Digestibility

Sakura Block Plus is a modification of Sakura Block, incorporating 6% earthworms and palm kernel cake as substitutes for corn. The objective of this study was to evaluate the supplementation of Sakura Block Plus in palm frond feed on the nutrient digestibility of beef cattle. The research design employed a Latin Square Design (LSD) with treatments P0 (10% Sakura Block Plus), P1 (8% Sakura Block Plus), P2 (10% Sakura Block Plus), and P3 (12% Sakura Block Plus). Four male beef cattle, 18 months old, weighing approximately ± 110 kg, were utilized throughout four treatment periods, each lasting 15 days. The results of the study indicated a significant improvement in the 12% Sakura Block Plus treatment concerning the digestibility of Neutral Detergent Fiber (NDF), Acid Detergent Fiber (ADF), and hemicellulose. In conclusion, the supplementation of Sakura Block Plus at the 12% level in palm frond feed resulted in the most optimal nutrient digestibility.

Genomic Diversity of the Retinta Breed Derived from Two Ancestral Bovine Lineages.

The Retinta breed, an autochthonous type of Spanish beef cattle, is highly adapted to breeding in its natural environment, which is characterized by a Mediterranean climate. The origins of this breed can be traced to two ancestral bovine stocks, which gave rise to distinct morphotypes differentiated primarily by coat color, alongside other significant traits such as growth, morphological conformation and temperament. Specifically, one morphotype comprises blond animals (Rubia Andaluza), genetically resembling the ancestral Bos taurus Aquitanicus, while the other encompasses brown- and red-colored animals (Retinta Extremeña) originating from Bos taurus Turdenatus stock. Over decades, these populations have undergone hybridization, leading to a unified population, albeit with the original subpopulations largely maintaining their genetic integrity. The objective of this study was to undertake genealogical and genomic characterization of these genetic lines, including a particular subpopulation within the blond animals (Tamarona cow). To achieve this, the genealogical records of 22,004 active animals were analyzed, and over 63,000 SNPs from a total of 1030 animals were examined for genomic characterization. Genealogical analysis revealed pedigree completeness and a high level of effective population size (Ne) across the entire population, yet relatively low Ne values within each pure line (ranging from 28.38 to 34.47). These findings underscore the ongoing efforts of the National Association of Retinta Breeders (ACRE) over the past decades to mitigate the loss of variability in this breed. The genomic characterization highlights the persistent differences within the original population and the predominant influence of the Retinto line within the current breed, as evidenced by principal component analysis (PCA) and admixture analysis. Furthermore, the identification of the Tamarona subpopulation within the blond lineage underlines its unique genetic composition, warranting its recognition as an official genetic line within the current Retinta breed. Given the small population size of these lines, particularly the Tamarona subpopulation, protective measures are imperative to preserve this distinct gene pool. Such measures would enhance the genetic diversity of the Retinta breed, which is essential for sustainable breeding practices in its natural habitats.

Phlebotomine (Diptera: Psychodidae) species and their blood meal sources in a new leishmaniasis focus in Los Montes de María, Bolívar, in northern Colombia

Introduction. El Alférez, a village in Los Montes de María (Bolívar, Colombia) and a macro-focus of leishmaniasis, recorded its first case in 2018, evidencing changes in the distribution and eco-epidemiology of the disease, although interactions between vectors and local fauna remain unknown. Objective. To evaluate the diversity of sandflies and their blood meal sources in the community of El Alférez in the municipality of El Carmen de Bolívar (Bolívar, Colombia). Materials and methods. In 2018, sandflies were collected using LED-based light traps in domestic, peridomestic, and sylvatic ecotopes and identified at the species level. Multiplex polymerase chain reaction targeting the mitochondrial cytochrome B gene was used to analyze blood from the digestive tract. Results. Lutzomyia evansi was the most abundant species (71.85%; n = 485/675), followed by Lu. panamensis, Lu. gomezi, Lu. trinidadensis, Lu. dubitans, Lu. abonnenci, and Lu.aclydifera. Twenty-five percent of the species had blood meals from Canis familiaris (36.00%; n = 9/25), Ovis aries (36.00%; n=9:/25), Bos taurus (24.00%; n = 6/25), Sus scrofa (20.00%; n = 5/25), and Homo sapiens (8.00%; n = 2/25). Lutzomyia evansi registered the highest feeding frequency (68.00%; n = 17/25), predominantly on a single (44.00%; n = 11/25) or multiple species (24.00%; n = 6/25). Conclusion. Results indicate a eclectic feeding behavior in Lu. evansi, implying potential reservoir hosts for Leishmania spp. and increasing transmission risk. This study is a first step towards understanding the diversity of mammalian blood sources used by sandflies, that may be crucial for vector identification and formulation of effective control measures.