This study describes a method to avoid the high‐pressure problem caused by swelling during the detritylation step in oligonucleotide solid‐phase synthesis using a modified RNA‐attached polystyrene support. The high‐pressure problem originated from the fast flow rate of the reagent and swelling of the solid support was solved by the addition of a pre‐swelling step using toluene before the detritylation step. Through this method, 20‐mer modified RNA/DNA oligonucleotide was synthesized at 3.0 mmol scale without pressure problems with 2′‐methoxy uridine polystyrene support, which has a loading capacity of 354 μmol/g. It was confirmed HPLC purity was improved 1.6% and impurities related to depurination were decreased 0.7% in LC–MS through the application of the pre‐swelling step. This approach has potential additional advantages like shortening detritylation times, hence helping overall cycle time and increasing the support amount in the column which leads to higher throughput.
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