Among the numerous biomedical diagnostic applications of the soft matter structure,Mueller- matrix polarimetry of the optical anisotropy of biological tissues occupies animportant place. Various Mueller- matrix polarimetry systems have been developed toimplement the diagnostic tasks.The aim of the study – to conduct a comparative analysis of the effectiveness of themultifractal processing method of polarization ellipticity maps of digital microscopicimages of supramolecular protein networks of polycrystalline blood smears in orderto determine new objective criteria (markers) of digital laser histological differentialdiagnosis of the thyroid gland pathology.Material and methods. Four observation groups were formed: 1. Control group – healthydonors (51 people). 2. Patients with nodular goiter (51 patients). 3. Patients with autoimmunethyroiditis (51 patients). 4. Patients with papillary cancer (51 patients). A comparative analysisof the effectiveness of the statistical and multifractal processing methods of polarizationellipticity maps of digital microscopic images of supramolecular protein networks ofpolycrystalline blood smears was carried out in order to determine new objective criteria(markers) of digital laser histological differential diagnosis of the thyroid pathology. Results. A comprehensive statistical and multifractal analysis of polarization ellipticitymaps of experimental blood samples of donors and patients with nodular goiter,autoimmune thyroiditis, and papillary cancer was performed. Objective statistical andmultifractal markers for differential diagnosis of the thyroid gland pathology weredetermined. An excellent level (~96 %-98 %) of the balanced accuracy of the multifractalanalysis method of polarization maps of blood for minimally invasive differentiation ofpathological conditions has been demonstrated.Conclusions. 1. The most optimal statistical markers of the method of mapping ellipticitymaps of polarization of digital microscopic images of blood smears were found to bethe most optimal, and a good diagnostic capacity of diagnosis (~87.3 %-88.3 %) anda satisfactory level (~78.4 %-81.4 %) of differentiation of thyroid pathology wereestablished. 2. Multifractal markers of the mapping ellipticity maps method of polarizationof digital microscopic images of blood smears were found to be the most optimal and anexcellent level (~96 %-98 %) of the balanced accuracy of differential diagnosis of thethyroid gland pathologies was established.