Energy storage systems are key to propelling the current renewable energy revolution. Accurate State-of-Charge estimation of the lithium-ion battery energy storage systems is a critical task to ensure their reliable operations. Multiple advanced battery model-based SOC estimation algorithms have been developed to pursue this objective. Nevertheless, these battery model-based algorithms are sensitive to measurement noises since the measurement noises affect the accuracy of battery model identification, thus leading to inaccurate battery SOC estimation consequently due to modeling error. The Butterworth low-pass filter has proven effectiveness in measurement noise filtering for accurate parameter identification, while the cutoff frequency design relies on prior knowledge of lithium-ion batteries, making its capability limited to general cases. To overcome this issue, this paper proposes an adaptive cutoff frequency design algorithm for the Butterworth low-pass filter. Simulation results show that the low-pass filter functions properly in the presence of multiple scales of measurement noises adopting the proposed work. Consequently, the parameters of the battery model and the SOC of the battery are both identified and estimated accurately, respectively. In detail, the parameters: R0, R1, C1, and the time constant τ are all identified accurately with low relative identification errors of 0.028%, 11.12%, 6.21%, and 5.94%, respectively, in an extreme case. Furthermore, the SOC of the battery can thus be estimated accurately, leaving a low of 0.081%, 0.97%, and 0.14% in the mean and maximum absolute SOC estimation error and the standard deviation, respectively.