A key challenge of our society is improving schools through the sustainable use of resources especially in countries at risk of desertification. The estimation of water consumption is the starting point for the correct dimensioning of water recovery systems. To date, unlike the energy sector, there is a lack of scientific information regarding water consumption in school buildings. Available data refer roughly to indirect estimates by means of utility bills and therefore no information on the role of water leakage in the internal network of the school is provided. In this context, the aim of the work was to define and implement an on-line monitoring system for the assessment of water consumptions in a small Mediterranean island primary school to achieve the following sub-goals: (1) definition of water consumption profile considering teaching activities and secretarial work; (2) direct assessment of water consumptions and leakages and, (3) quantification of the behaviour parameters. The installed monitoring system consisted of 33 water metres (3.24 persons per water metre) equipped with sensors set on 1-L impulse signal and connected to a data logging system. Results showed consumptions in the range 13.6–14.2 L/student/day and leakage equal to 54.8 % of the total water consumptions. Considering the behavioural parameters, the consumptions related to toilet flushing, personal, and building cleaning were, respectively, 54, 43 and 3 % of the total water ones. Finally, the obtained results could be used for dimensioning the most suitable water recovery strategies at school level such as grey water or rainwater recovery systems.