Extreme precipitation can lead to severe environmental and economic impacts. Thus, future changes in extreme precipitation and their uncertainties are of major interest. Changes in extreme precipitation can be decomposed into thermodynamic (temperature-related) and dynamic (vertical velocity related) contributions with a scaling approach for extreme precipitation. Applying this approach to the global climate model ensembles CMIP5 and CMIP6, we decompose projection uncertainties of extremes in daily precipitation into uncertainties of thermodynamic and dynamic changes. We analyze regional patterns of the total uncertainties in extreme precipitation projections, as well as the thermodynamic and dynamic contributions to these uncertainties. Total uncertainties relative to the projected multi model mean are dominated by the dynamical contributions, and are large over the tropics and subtropics, but smaller over the high and mid-latitudes. Uncertainties in the thermodynamic contribution are generally small. From CMIP5 to CMIP6, uncertainties in thermodynamic and dynamic changes are slightly reduced in the high and mid-latitudes, while there is a substantial reduction of the uncertainties of the dynamic changes in the tropics and subtropics.