As the goal of “double carbon”, integrated energy systems aiming at the development of low-carbon economy are developing rapidly, and carbon capture and other emission reduction technologies are gradually gaining more extensive development space. For controlling carbon emissions and enhance the consumption of renewable energy. This work proposes to introduce carbon capture technology in the framework of integrated energy system and optimize the energy dispatching of integrated energy system in multiple time scales, and design a multi-time scale optimization model of integrated energy system with carbon capture. Based on the basic architecture of a low-carbon integrated energy system, this study analyzes the power characteristics of each unit of the integrated energy system, which consists of thermal power units, gas turbines, electric boilers, batteries, gas storage, heat storage, etc. By studying the energy conversion and storage processes of each unit, a power model of each unit of the integrated energy system is established. On this basis, the relationship between carbon emissions and unit output of thermal power units and gas turbines was studied, and a carbon emission model for the energy supply unit in the comprehensive energy system was established. At the same time, in order to solve the problem of carbon emission reduction under the day ahead scheduling plan of the integrated energy system, considering the emission reduction goals and system operation security factors, the study analyzed the economic model and carbon emission model of the integrated energy system, established the day ahead low-carbon scheduling model of the integrated energy system, and reasonably planned the output of each unit that can achieve the carbon emission reduction goals on the premise of meeting the balance of supply and demand. The innovation of the research method of this paper is that this paper establishes a multi time scale rolling optimization model under the emission reduction goal of the integrated energy system. Based on the day ahead scheduling scheme obtained in the day ahead low-carbon scheduling phase, the day ahead plan is first revised through 4 h rolling scheduling in the day; Then, with the goal of minimizing the adjustment amount, fine tune the unit output within 15 minutes to provide a daily output plan for subsequent low-carbon emission reduction targets. The outcomes indicate that in the practical application, the carbon emission of the optimized model in the peak hour 11:00 to 12:00 phase is 118 tons, which is 7 tons less than the 125 tons of the traditional model. In summary, it demonstrates that the studied multi-timescale optimization model of integrated energy system with carbon capture has good application. We have studied and analyzed the low-carbon implementation mechanism of coordinated cooperation in multiple time scales, and constructed a multi time scale rolling optimization model, laying a theoretical foundation for subsequent low-carbon scheduling research. This enables the system to formulate more accurate and reasonable scheduling plans, while improving the low-carbon performance and economic benefits of the system, providing reference for the low-carbon development of the power system.