Energy Of Complex Formation Research Articles

Operating mechanisms of electrolytes in magnesium ion batteries: chemical equilibrium, magnesium deposition, and electrolyte oxidation.

Since the early nineties there have been a number of reports on the experimental development of Mg electrolytes based on organo/amide-magnesium chlorides and their transmetalations. However, there are no theoretical papers describing the underlying operating mechanisms of Mg electrolytes, and there is no clear understanding of these mechanisms. We have therefore attempted to clarify the operating mechanisms of Mg electrolytes by studying the characteristics of Mg complexes, solvation, chemical equilibrium, Mg-deposition processes, electrolyte-oxidation processes, and oxidative degradation mechanism of RMgCl-based electrolytes, using ab initio calculations. The formation and solvation energies of Mg complexes highly depend on the characteristics of R groups. Thus, changes in R groups of RMgCl lead to changes in the equilibrium position and the electrochemical reduction and oxidation pathways and energies. We first provide a methodological scheme for calculating Mg reduction potential values in non-aqueous electrolytes and electrochemical windows. We also describe a strategy for designing Mg electrolytes to maximize the electrochemical windows and oxidative stabilities. These results will be useful not only for designing improved Mg electrolytes, but also for developing new electrolytes in the future.

Hydrophobic-Radical Influence on the Structure and Vibrational Spectra of Zwitterionic Glycine and Alanine in the Condensed State

The structure and vibrational spectra of zwitterionic glycine and alanine in aqueous solution and the solid state were calculated in the B3LYP/6-311++G(d,p) approximation. The environment infl uence was taken into account by two methods, i.e., the self-consistent reaction fi eld (SCRF) model and a clear accounting for the effects of hydrogenbonds (complexes with water molecules). The geometric, energetic, and spectral characteristics required to establish that a hydrophobic radical affected the ability of glycine and alanine to form H-bonds were determined. It was found by comparison with experiment that zwitterionic glycine and alanine in the condensed states had to be surrounded with three water molecules, one of which was situated between the N+H3 and COO– ions, in order to calculate their vibrational (IR and Raman) spectra. The formation energies of the alanine complexes with water were 56.47 kcal/ mol and 12.55 kcal/mol greater than those of glycine for formation of a complex with one water molecule situated between the ionized groups and with three water molecules, respectively.

CO- and NO-Induced Disintegration and Redispersion of Three-Way Catalysts Rhodium, Palladium, and Platinum: An ab Initio Thermodynamics Study

Disintegration of supported nanoparticles (NPs) in the presence of reactants can lead to catalyst deactivation or be exploited to redisperse sintered catalysts. To better understand the stability of TiO2(110)-supported three-way catalysts Rh, Pd, and Pt NPs during NOx and CO reduction, we present an ab initio thermodynamics study of the feasibility for these NPs to disintegrate into adatom-reactant complexes across a large parameter space of temperatures, pressures, and sizes. The tendencies for disintegration and redispersion between supported Rh, Pd, and Pt NPs are established. Compared to both Pd and Pt, Rh NPs are found to be more susceptible to either NO- or CO-induced disintegration, due to the large and exothermic formation energy of the Rh adatom complexes. Moreover, NO is a more efficient reactant for particle redispersion than CO. These findings provide valuable insights for how to either prevent reactant-induced NP disintegration or facilitate reactant-induced redispersion of sintered catalysts.

Molecular insight into the amine–water interaction: A combined vibrational, energetic and NBO/NEDA study

Hydrates of the neutral and protonated cyclohexylamine and of the cyclohexyldiamine isomers in the neutral, mono and diprotonated forms are studied theoretically at the B3LYP/aug-cc-pVDZ level of theory. Vibrational analysis of the optimized complexes shows variations in the frequency and intensity of the N–H and O–H stretching modes induced by charge variation and groups’ proximity. These results are quantified by calculating the energies of complex formation (ΔEcomplex). It is shown that the values obtained for this quantity result from the balance between water association (ΔEass) and amine–water interactions (ΔEint). Amino groups’ approximation leads to values of ΔEint different from those calculated by adding their individual contribution. This behavior is explained by the application of the Natural energy decomposition analysis (NEDA) and Natural Bond Orbitals (NBO) theory to the complexes and to the amine–water pairs. The Atoms in Molecules (AIM) theory is also used to interpret the hydration of the diprotonated diamines. Special attention is given to the characterization of the hydrogen bonds’ nature, as well as to the effect of the hydrogen bonding cooperativity and charges proximity on the amine–water interaction.

The structure and properties of (aluminum, oxygen) defect complexes in silicon

The atomic structure and electronic properties of aluminum (Al)-related defect complexes in silicon (Si) are investigated using first-principles calculations. Individual substitutional Al (AlSi), interstitial Al (Ali) and their possible complex configurations with oxygen (O) atoms are studied. We find a unique stable complex configuration consisting of an Ali and an oxygen dimer, Ali-2Oi, which introduces deep levels in the band gap of Si. The formation energies of the Ali-2Oi complexes could be lower than that of individual Ali atoms under oxygen-rich conditions. The formation of Ali-2Oi complexes may explain the experimental observation that the coexistence of Al and O results in reduced carrier lifetime in Si wafers.

Complex formation of fenchone with α-cyclodextrin: NMR titrations.

13C NMR titration studies of inclusion complexes of bicyclic terpenoid, fenchone enantiomers with α-cyclodextrin revealed their 1:2 guest–host stoichiometry. Sequential binding constants were determined indicating a strong binding cooperativity of two α-cyclodextrin to fenchone. The overall association constants were used to calculate the Gibbs free energies of diastereomeric complex formation, which might be used as a measure of chiral recognition of fenchone by α-cyclodextrin. These results were compared with corresponding data derived for camphor, which is an isomeric bicyclic terpenoid.Electronic supplementary materialThe online version of this article (doi:10.1007/s10847-013-0356-4) contains supplementary material, which is available to authorized users.

Synergic effects in catalytic systems Mo(VI) − hydroxyl-containing ligand – KClO3

The influence of some hydroxyl-containing ligands (L) on the catalytic current in the system molybdenum(VI) – potassium chlorate has been investigated. It has been shown that the phenomenon of synergism in studying catalytic currents is associated with the activating action of L. The activity of a mixture of L and an oxidant significantly exceeds the sum of effects for their separate influence. The growth of catalytic current is possible if the catalyst (a metal ion M) possesses free or labile seats in the coordination area for formation of intermediate active compounds of the catalyst with the oxidant. It has been shown that the increase of the catalytic current is associated with formation of the intermediate active complex [Mo(V) L ClO–3]. The scheme of reactions occurring in solution and on an electrode has been elaborated. Found values of the formation constant, energy, and entropy of intermediate active complexes prove the high activity of such systems, improving the voltammetric determination of the metal catalyst by more than one order.

Host-guest complexes of mixed glycol-bipyridine cryptands: prediction of ion selectivity by quantum chemical calculations, part V.

The selectivity of the cryptands [2.2.bpy] and [2.bpy.bpy] for the endohedral complexation of alkali, alkaline-earth and earth metal ions was predicted on the basis of the DFT (B3LYP/LANL2DZp) calculated structures and complex-formation energies. The cavity size in both cryptands lay between that for [2.2.2] and [bpy.bpy.bpy], such that the complexation of K+, Sr2+ and Tl3+ is most favorable. While the [2.2.bpy] is moderately larger, preferring Rb+ complexation and demonstrating equal priority for Sr2+ and Ba2+, the slightly smaller [2.bpy.bpy] yields more stable cryptates with Na+ and Ca2+. Although the CH2-units containing molecular bars fixed at the bridgehead nitrogen atoms determine the flexibility of the cryptands, the twist angles associated with the bipyridine and glycol building blocks also contribute considerably.

Lead incorporation mechanism in LiF crystals

The doping process of LiF with Pb has been described by using structural ab initio modeling and experimental results. The values of formation energy of several complexes involving Pb ions show that the presence of charge-balancing vacancies ease the metal incorporation in the crystal. The metal successively captures the vacancies to form a final stable complex PbLi•+VLi′. Experimental data from X-ray absorption spectroscopy confirm the presence of Pb in LiF crystals in this site revealing both Pb-F bonds and collinear Pb-F-Li atomic configurations. A maximum solubility of Pb in LiF of the order of 3×1020/cm3 can be estimated from these calculations.

Analysis of supramolecular complex energetics in artificial replicators

The energetics of complex formation in a number of artificial self-replicating systems has been studied by density functional theory calculations. Complex stabilities were dissected into stabilizing contributions from hydrogen bonding, dispersion, electrostatics, and destabilizing distortions of monomers from their optimum geometries. Strong cooperative effects were identified in all systems, and dispersion and electrostatics contribute more to the overall energies of complex formation than hydrogen bonding in some systems.

Helium Bubbles in Fe: Equilibrium Configurations and Modification by Radiation

ABSTRACTWe have examined the properties of helium bubbles in Fe using two different Fe-He potentials. The atomic configurations and formation energies of different He-vacancy complexes are determined and their stability in the region of nearby collision cascades is investigated. The results show that the optimal He to Fe vacancy ratio increases from about 1:1 for approximately 5 vacancies up to about 4:1 for 36 vacancies. Collision cascades initiated near the complex show that Fe vacancies produced by the cascades readily become part of the He-vacancy complexes. The energy barrier for an isolated He interstitial to diffuse was found to be 0.06 eV. Thus a possible mechanism for He bubble growth would be the addition of vacancies during a radiation event followed by the subsequent accumulation of mobile He interstitials produced by the corresponding nuclear reaction.

Can the substituent in the para position of anilide ion influence the N−···H–F → N–H···F− switching: a quantum chemical study

The effect of substituents in the para position of anilide ion (An) on the N−···H–F → N–H···F− switching in X–An–HF (X = H, Me, CHO, CN, NO, F, NO2, OH and OMe) complexes was investigated by means of B3LYP and MP2 quantum chemical methods. To delve into the mechanistic details of the proton transfer process, potential energy curve and further geometrical parameters involved in H-bonding during the course of the proton transfer process were evaluated at the MP2/6-311++G(2d,2p) level of theory. The changes in H-bond strength because of variation of substituents were well accompanied by changes in formation energy of complexes, structural parameter, electron density, natural charge and charge transfer between subunits. For X = H, Me, CHO, CN, NO, F and NO2 substituents, our results at MP2/6-311++G(2d,2p) level showed that the minimum energy structures correspond to the N···HF H-bonded complexes without proton transfer occurring. On the other hand, for electron-donating substituents OH and OMe, proton is transferred from HF to anilide ion and the minimum energy structures are HNH···F− H-bonded complexes. The nature of HN−···HF and HN–H···F− interactions in complexes was characterized by means of atoms in molecules and natural bond orbital analyses.

Inclusion complex formation of β-cyclodextrin and Naproxen: a study on exothermic complex formation by differential scanning calorimetry

Inclusion complex formation between β-cyclodextrin and Naproxen was investigated using differential scanning calorimetry (DSC) as a function of the β-cyclodextrin-to-Naproxen molar ratio, ranging from 0:5:1 to 5:1. When these mixtures are heated above the melting temperature of Naproxen, an exothermic peak is observed at a temperature slightly higher than the melting peak of Naproxen. This peak, which has not been previously reported, has been interpreted as an exothermic energy of inclusion complex formation. The magnitude of this complex formation peak was found to be dependent upon the composition of the β-cyclodextrin and Naproxen mixture and increased in magnitude to a maximum value at a β-cyclodextrin:Naproxen molar ratio of 2:1. In addition, Naproxen recrystallization and re-melting peaks seen in the cooling and re-heating scans, respectively, decreased in magnitude with increasing molar ratio and totally disappeared for the mixture with 5:1 of β-cyclodextrin to Naproxen ratio indicative of complete inclusion of Naproxen in the cyclodextrin cavities. Complete inclusion was further reflected by the disappearance of key Naproxen peaks in Fourier transform infrared spectra of samples recovered from DSC experiments. The large excess of β-cyclodextrin needed to fully complex the Naproxen was found to be due to slow kinetics. Increasing the hold time after the initial melting led to inclusion efficiencies up to 95 % even for the 2:1 mixture. These experiments suggest that ratios of β-cyclodextrin:Naproxen 2:1 or greater facilitate the process by increasing the presence of cyclodextrin molecules in the close proximity of the drug molecules and lead to high inclusion efficiencies.

Ab initioinvestigation of defect formation at ZrO2-CeO2interfaces

The structural and electronic properties of low index (100) and (111) ZrO${}_{2}$-CeO${}_{2}$ interfaces are analyzed on the basis of density functional theory calculations. The formation energy and relative stability of substitutional defects, oxygen vacancies, and vacancy-dopant complexes are investigated for the (100) orientation. By comparing these results with the ones obtained in bulk structures, we provide a possible explanation for the higher experimental ionic conductivity measured at the interface.

Energy of ligand-RNA complex formation

This work presents an energetic analysis of complex formation of eleven ligands with different structure and charge with RNA aptamers. The most entire set of the components of the total Gibbs energy of complex formation has been first calculated using different physical factors: van der Waals, electrostatic and hydrophobic interactions, hydrogen bonds and specific factors being predominantly of entropic character. The calculated Gibbs energy is found to be in a good agreement with experimental data. Different energy components which stabilize and destabilize complexes are lined up according to the degree of importance. The results obtained provide an understanding of the role of different physical interactions in a ligand-RNA complex formation.

Spectroscopic Study on the Effect of Imidazophenazine Tethered to 5′-End of Pentadecathymidilate on Stability of Poly(dA)·(dT)15 Duplex

The effect of imidazo[4,5-d]phenazine (Pzn) attached to the 5(')-end of (dT)(15) oligonucleotide via a flexible linker on the thermal stability of poly(dA)·(dT)(15) duplex was studied in aqueous buffered solution containing 0.1 М NaCl at the equimolar ratio of adenine and thymine bases (100 μM each) using spectroscopic techniques. Duplex formation was investigated by measuring UV absorption and fluorescence melting curves for the Pzn-modified system. Tethered phenazine derivative enhances the thermostability of poly(dA)·(dT)(15) duplex increasing the helix-to-coil transition temperature by 4.5 °С due to an intercalation of the dye chromophore between AT-base pairs. The thermodynamic parameters of the transition for non-modified and modified systems were estimated using "all-or-none" model. The modification of the (dT)(15) results in a decrease in the transition enthalpy, however, the observed gain in the Gibbs free energy of complex formation, ΔG, is provided with the corresponding decrease in entropy change. The increase of ΔG value at 37 °C in consequence of (dT)(15) modification was found to be equal to 1.3 kcal/mol per oligonucleotide strand.

Thermodynamic properties of donor–acceptor complexes of tertiary amine with aryl ketones in hexane medium

The thermodynamic stability of complexes formed between N,N-dimethylaniline (DMANI) and three ketones, namely, acetophenone (ACP), 4-chloroactophenone (ClACP) and 4-methylacetophenone (MACP) in n-hexane is extensively investigated by spectral and ultrasonic methods. The ultrasound scan was carried out in the temperature range 208.15–313.15 K and at atmospheric pressure on solutions containing equimolar concentrations of components ranging from 0.025 to 0.2 M. The existence of solute–solute interactions has also been confirmed through electronic absorption spectra analyzed with Benesi - Hildebrand theory at 303.15 K. The stability constants of the donor–acceptor complexes determined both by spectroscopic and ultrasonic methods are comparable and follow similar trends. The trend in the formation constants is discussed with structures of the components. The thermodynamic behavior of the systems was explained through the computed values of the free energy (Δ G ), enthalpy (Δ H ) and entropy (Δ S ) changes for complex formation are computed and discussed.

Isothermal titration calorimetry (ITC) study of natural cyclodextrins inclusion complexes with drugs

Isothermal titration calorimetry (ITC) was used to characterize inclusion complex formation of natural cyclodextrins (α- and β-cyclodextrin) with three drugs ((+)brompheniramine, (±)brompheniramine, cyclopentolate) in aqueous solutions. ITC measurements were carried out at 298.15 K on a Microcal OMEGA ultrasensitive titration calorimeter (MicroCal Inc.). The experimental data were analyzed on the basis of the model of a single set of identical sites (ITC tutorial guide). β-CD forms inclusion complexes of stoichiometry 1:1 with the all investigated drugs. In turn, smaller molecule of α-CD forms inclusion complexes of two different stoichiometry: with bigger molecules ((+)brompheniramine and (±)brompheniramine) of a stoichiometry 2:1 and with smaller molecules (cyclopentolate) of a stoichiometry 1:2. Based on the experimental values of equilibrium constant (K) and enthalpy of complex formation (ΔH), the Gibbs energy of complex formation (ΔG), and the entropy of complex formation (ΔS), have been calculated, for all the investigated systems. Obtained results showed that complex formation of β-CD (bigger molecule with wider cavity compared to β-CD) with both (+)brompheniramine, (±)brompheniramine, and cyclopentolate is enthalpy driven while complexes of α-CD with the all investigated drugs are enthalpy-entropy stabilized. This indicated that the difference in the cavity dimensions is reflecting in different driving forces of complex formation and binding modes what resulted in different stoichiometry of the obtained inclusion complexes.

Complexation behavior of trivalent actinides and lanthanides with 1,10-phenanthroline-2,9-dicarboxylic acid based ligands: insight from density functional theory

We have investigated the complexation behavior of preorganized 1,10-phenanthroline-2,9-dicarboxylic acid (PDA) based ligands with trivalent lanthanides and actinides using density functional theory with various GGA type exchange-correlation functionals and different basis sets. New ligands have been designed from PDA through functionalization with soft donor atoms such as sulfur, resulting in mono-thio-dicarboxylic acids (TCA/TCA1) and di-thio-dicarboxylic acid (THIO). It has been found that selectivity in terms of complexation energy of actinides over lanthanides is the maximum with TCA1 where the metal-ligand binding is through the O atoms. This unusual feature where a softer actinide metal ion is bonded strongly with hard donor oxygen atoms has been explained using the popular chemical concepts, viz., Pearson's Hard-Soft-Acid-Base (HSAB) principle and the frontier orbital theory of chemical reactivity as proposed by Fukui. Detailed analysis within the framework of the HSAB principle indicates that the presence of softer nitrogen atoms in the phenanthroline moiety (which also act as donors to the metal ion) has a profound influence in changing the soft nature of the actinide ion, which in turn binds with the hard oxygen atoms in a stronger way as compared to the valence isoelectronic lanthanide ion. Also, the trends in the variation of calculated values of the metal-ligand bond distances and the corresponding complex formation energies have been rationalized using the Fukui reactivity indices corresponding to the metal ions and the donor sites. All the calculations have also been done in the presence of solvent. The "intra-ligand synergistic effect" demonstrated here for PDA or TCA1 with soft and hard donor centers might be very important in designing new ligands for selective extraction of various metal ions in a competitive environment. However, for TCA and THIO ligands with only soft donor centers, "intra-ligand synergism" may not be very efficient although reports are available demonstrating soft-soft inter-ligand synergism. Nevertheless, in the case of TCA and THIO complexes, a shorter Am-S bond distance in conjunction with lower metal ion charge and a higher percentage of orbital interaction energy corroborate the presence of a higher degree of covalency in Am-S bonds, which in turn may be responsible for selectivity towards Am(3+).

Aromatic character of heptafulvene and its complexes with halogen atoms

Geometry optimization of heptafulvene-halogen complexes (halogens: F, Cl, Br, I, and At) carried out at the B3LYP/6-311+G(d,p) level of theory allowed us to estimate the geometry-based aromaticity index HOMA, the magnetism-based indices NICS, NICS(1), and NICS(1)(ZZ), as well as the energy of complex formation. Application of the NBO method allowed us to estimate the pEDA characteristics of the π-electron distribution in complexes (i.e., the electron excess/deficiency of the π-electron system in the ring). All of the characteristics of the complexes were found to be mutually interrelated, exhibiting good or at least acceptable correlation coefficients. It was also noted that halogen atoms with greater radii yielded weaker complexes and lower aromaticities, as shown by the HOMA, NICS, and pEDA indices. The energy of complex formation was observed to be linearly correlated with the degree of aromatization of the heptafulvene ring, as expressed by these indices.