Micrographs Research Articles

Characteristics of aluminium nitride thin film prepared by pulse laser deposition with varying laser pulses

In this work, the studies of Aluminium Nitride (AlN) thin film deposited on silicon (Si) (111) substrate using the pulsed laser deposition (PLD) method, specifically under different number of laser pulses, were performed. From the electron micrographs, the samples exhibited a densely packed granular morphology. The film thickness, particle size, and surface roughness were found to be increasing along with number of laser pulses. X-ray diffraction analysis revealed all AlN samples to have hexagonal wurtzite structure. Additionally, the calculated lattice constants suggest AlN experiences inward biaxial stress during growth. This was in agreement with the Raman results, aside from substantiating the presence of AlN with (100) and (101) plane to be grown. Room temperature photoluminescence (PL) measurements showed band-edge emission was attributed to AlN along with some defect-related bands. Additionally, the band-edge emission shifted to higher photon energy, i.e. 5.49–5.89 eV with increasing laser pulses. Such observations were consistent with that obtained from UV–Vis spectroscopy.

The antibacterial, antioxidant, and insecticidal activities of essential oils from Thymus vulgaris L., Salvia officinalis L., and Ocimum basilicum L.

AbstractThe essential oils from Thymus vulgaris, Salvia officinalis, and Ocimum basilicum were extracted by hydrodistillation, characterized by gas chromatography/mass spectrometry, and quantified by gas chromatography/flame ionization detector. The principal constituents were thymol, ρ‐cymene and carvacrol (T. vulgaris); camphor, β‐pinene, and 1,8‐cineole (S. officinalis); and (E)‐anethole, linalool, and 1,8‐cineole (O. basilicum). The essential oil from T. vulgaris was the most effective, forming inhibition halos of 46.16 ± 0.16 and 26.38 ± 0.33 mm, respectively, for Salmonella choleraesuis and Listeria monocytogenes. This essential oil was also more effective against S. choleraesuis, with a minimum inhibitory concentration of 8.85 mg mL−1, and a minimum inhibitory concentration of 17.71 mg mL−1 for L. monocytogenes. No bactericidal activity against S. choleraesuis and L. monocytogenes was observed for the essential oils from S. officinalis, and O. basilicum. Scanning electron micrographs showed that the addition of essential oils left the bacterial cells damaged and deformed. Significant 2,2‐diphenyl‐1‐picrylhydrazyl free radical scavenging capacity and lipid substrate protection were observed in the β‐carotene bleaching assay for the essential oil from T. vulgaris, with IC50 of 231.13 ± 0.53 and 15.25 ± 0.38 μg mL−1, respectively. A dose‐dependent relationship between antioxidant activity and concentrations was observed in the tests. Toxicities of LC50 = 1.24, 3.51 and 1.19 mg mL−1 against Drosophila suzukii flies, respectively, were observed for the essential oils from T. vulgaris, S. officinalis, and O. basilicum. Results suggest that essential oils can be promising antioxidant agents, insecticides, and inhibitors of pathogenic bacteria.

Enhanced optoelectronic and catalytic properties of Sm doped SnO2 thin films

Herein, we report the optoelectronic and malachite green (MG) aqueous dye model pollutant degradation characteristics of samarium (Sm) doped tin oxide (SnO2:Sm) thin films deposited on glass substrate by chemical spray pyrolysis technique. The tetragonal crystal structure and polycrystalline nature were elucidated from X-ray diffraction (XRD) analysis, and the calculated crystallite size using Scherrer's relation was found to vary between 36 and 45 nm. A high optical transparency of 92 % was achieved for SnO2:Sm (3 wt%). The extrapolation of linear fit indicates a slight decrement in the band gap. Energy dispersive X-ray analysis (EDAX) confirmed the presence of Sn, O and Sm elements and their composition. The quantitative compositional percentage of Sn, O and Sm was determined by X-ray photoelectron spectroscopy (XPS) analysis. The scanning electron micrographs (SEM) showed polyhedron-like shaped grains with cracks and void-free film surface. The 3 wt% Sm:SnO2 thin film exhibited a higher average surface roughness (19.63 nm) than other films. Strong ultraviolet (365 nm), blue (493 nm), and green (520 nm) emissions were observed for all the films, as recorded by photoluminescence (PL) studies. High electron concentration (7.9 × 1020/cm3), low resistivity (0.356 × 10−3 Ω cm), and a high figure of merit (FOM, 5.11 × 10−2 Ω−1) were obtained for 3 wt % of SnO2:Sm thin films. Furthermore, a relatively high photocurrent (8.22 mA) was attained for the 3 wt% Sm:SnO2 thin film. Enhanced photocatalytic efficiency (95 %) was achieved for the 4 wt% Sm:SnO2 film against MG dye aqueous solution. The results obtained in the present study demonstrate high optical transparency, electrical conductivity, enhanced FOM, and photocatalytic degradation efficiency for 3 and 4 wt% Sm-doping, respectively. Therefore, Sm-doped SnO2 could be useful for developing and designing novel devices for optoelectronic and photocatalytic applications.

Evolutionary reversal of physical dormancy to nondormancy: evidence from comparative seed morphoanatomy of Argyreia species (Convolvulaceae).

Argyreia is the most recently evolved genus in the Convolvulaceae, and available information suggests that most species in this family produce seeds with physical dormancy (PY). Our aim was to understand the evolution of seed dormancy in this family via an investigation of dormancy, storage behaviour, morphology and anatomy of seeds of five Argyreia species from Sri Lanka. Imbibition, germination and dye tracking of fresh intact and manually scarified seeds were studied. Scanning electron micrographs and hand sections of the hilar area and the seed coat away from the hilar area were compared. Scarified and intact seeds of A. kleiniana, A. hirsuta and A. zeylanica imbibed water and germinated to a high percentage, but only scarified seeds of A. nervosa and A. osyrensis did so. Thus, seeds of the three former species are non-dormant (ND), while those of the latter two have physical dormancy (PY); this result was confirmed by dye-tracking experiments. Since >90% of A. kleiniana, A. hirsuta and A. zeylanica seeds survived desiccation to 10% moisture content (MC) and >90% of A. nervosa and A. osyrensis seeds with a dispersal MC of ~12% were viable, seeds of the five species were desiccation-tolerant. A. nervosa and A. osyrensis have a wide geographical distribution and PY, while A. kleiniana, A. hirsuta and A. zeylanica have a restricted distribution and ND. Although seeds of A. kleiniana are ND, their seed coat anatomy is similar to that of A. osyrensis with PY. These observations suggest that the ND of A. kleiniana, A. hirsuta and A. zeylanica seeds is the result of an evolutionary reversal from PY and that ND may be an adaptation of these species to the environmental conditions of their wet aseasonal habitats.

Potential of Bacillus spp. against root-knot nematode, Meloidogyne enterolobii parasitizing chili (Capsicum annuum L.)

The root-knot disease caused by root-knot nematodes, Meloidogyne spp. poses a serious threat in economic crops worldwide, causing substantial economic losses. Chemical-based pesticides are the most commonly employed measure to manage root-knot diseases in chili and other crops. In this study, four Bacillus strains were identified as biocontrol agents against M. enterolobii. The cell-free culture filtrates (CF) and cell suspension (CS) of the Bacillus were prepared and tested to determine their efficacy against M. enterolobii, as compared to abamectin (a nematicide) and distilled water. The CF derived from all strains showed the greatest potential, equivalent to abamectin, in controlling M. enterolobii. Results evidenced a 92%–94% reduction in nematode hatching and 99–100% increase in second-stage juvenile mortality, compared to the untreated control. In addition, Scanning Electron Micrograph (SEM) observations showed abnormality in nematode cuticles treated with CF of the bacteria. Similar results were found in the greenhouse experiments where CF of all strains significantly reduced the number of galls, egg masses and eggs per gram root. These Bacillus spp. displayed a potential for effectively controlling M. enterolobii, probably due to their ability to produce nematode cell wall degrading enzymes, i.e., protease and lipase. In conclusion, our study indicates that the Bacillus strains studied can be utilized effectively to manage M. enterolobii, the causal agent of chili root-knot disease.

Contribution to the hyaliodine fauna (Miridae: Deraeocorinae: Hyaliodini) of New Caledonia with a description of two new species and a checklist of New Caledonian plant bugs

Two new species of the Montagneria Akingbohungbe, 1978—M. barbarae sp. nov. and M. nataliae sp. nov.—are diagnosed and described. Photographic images of habitus and genital structures, as well as scanning electron micrographs of the selected structures of both species are provided. The gland openings located on the thorax are figured and discussed. New records of three hyaliodine species, Femurocoris spinosus Carvalho, 1977, Montagneria cuneatus (Distant, 1920), and M. nigroscutellatum (Distant, 1920) in New Caledonia are also presented. Moreover, a checklist of the Miridae species of New Caledonia is given.

Cutting Efficiency of Diamond Grinders on Composite and Zirconia.

This in vitro study was carried out to compare the cutting efficiency of diamond grinders on zirconia and resin-based composite materials. Grinders were employed with a special holder for the handpiece to apply a constant load (160 g) for resin-based composite (8 cuts, 40 s each) and zirconia materials (4 cuts, 5 min each; n = 10 for each material and grinder). To assess the efficiency of the grinders, weight measurements of the material were taken before and after the grinding process. Scanning electron micrographs were captured for instrument surfaces before and after testing and for the resulting surface of the materials. In the resin-based composite group, there were significant differences in weight removal between the burs for both the baseline (first cut; p = 0.009) and removal after the eighth cut (p = 0.049). Statistically significant decreases in weight removal compared to the baseline values were noted for the third, fourth, sixth, and seventh steps (p ≤ 0.046). For the zirconia group, significant differences existed in weight removal between the burs for the baseline (first cut; p < 0.001) and removal after the fourth cut (p < 0.001). A significant positive correlation was observed between removal and the number of cuts (Pearson: 0.673; p < 0.001). A statistically significant decrease in removal compared to the respective baseline value was found for the fourth step (p = 0.006). The initial wear removal and durability significantly differed between the grinders used on resin-based composite and zirconia. Achieving comparable weight removal took five times longer when grinding zirconia compared to the resin-based composite.

In-situ synchrotron diffraction analysis of deformation mechanisms in an AA5083 sheet metal processed by modified equal-channel angular pressing

Severe plastic deformation (SPD) is a process to significantly improve the mechanical properties of materials by grain refinement. For forming at room temperature (RT), higher strengths can thus be achieved; for increased temperatures (HT), greater elongations can be achieved. This great potential has been chiefly applied only on laboratory scale due to a lack of industrial process design. Equal-channel angular pressing (ECAP) offers the possibility to integrate these advantages in industrial processes. This paper investigates a modified ECAP process for aluminum AA5083 sheet metal. Two passes of ECAP for sheet metal and an additional heat treatment were used. To study the material deformation on a micro-scale, in-situ synchrotron measurements at DESY (Hamburg) were performed to analyze the evolution of lattice strains and dislocation densities during tensile testing. The mechanical properties of the ECAP-processed sheet material reveal an increase in yield strength and a decrease in elongation at RT. Higher strains can be measured for the processed material at elevated test temperatures. In-situ diffraction results show a changed behavior of the ECAP sheet material compared to the reference material for both temperature regimes. These changes are based on the increased defect density in the material, which leads to increased strength at RT. At HT, dynamic recrystallization occurs during tensile testing, and the prevailing deformation mechanisms reconfigure. Electron backscatter diffraction (EBSD) and micrographs are used to interpret and supplement the observations. The findings provide the basis for the in-depth understanding of the deformation behavior of the material and help to apply the ECAP process on an industrial scale.

Modified oxylipins as inhibitors of biofilm formation in Staphylococcus epidermidis

New approaches to combating microbial drug resistance are being sought, with the discovery of biofilm inhibitors considered as alternative arsenal for treating infections. Natural products have been at the forefront of antimicrobial discovery and serve as inspiration for the design of new antibiotics. We probed the potency, selectivity, and mechanism of anti-biofilm activity of modified oxylipins inspired by the marine natural product turneroic acid. Structure-activity relationship (SAR) evaluation revealed the importance of the trans-epoxide moiety, regardless of the position, for inhibiting biofilm formation. trans-12,13-epoxyoctadecanoic acid (1) and trans-9,10 epoxyoctadecanoic acid (4) selectively target the early stage of biofilm formation, with no effect on planktonic cells. These compounds interrupt the formation of a protective polysaccharide barrier by significantly upregulating the ica operon’s transcriptional repressor. This was corroborated by docking experiment with SarA and scanning electron micrographs showing reduced biofilm aggregates and the absence of thread-like structures of extrapolymeric substances. In silico evaluation revealed that 1 and 4 can interfere with the AgrA-mediated communication language in Staphylococci, typical to the diffusible signal factor (DSF) capacity of lipophilic chains.

Further studies on the diversity of Cylicospirura Vevers, 1922 (Nematoda: Spirocercidae) in African carnivores, with description of a new species.

Cylicospirura Vevers, 1922 is a genus of gastrointestinal spirurid nematodes parasitizing mainly felid but also canid, hyaenid and dasyurid hosts. Presently, 11 species are recognized worldwide, of which 4, Cylicospirura subaequalis, Cylicospirura felinea, Cylicospirura crocutae and Cylicospirura pardalis, have been recorded from African carnivores. In the present study, we describe Cylicospirura phiri n. sp. from hyaenas, namely Crocuta crocuta (type host) in Zimbabwe and Hyaena hyaena in Cameroon. The new species is the second species in the genus with bicuspid teeth. Furthermore, it can be distinguished from its congeners by a combination of characters, such as the absence of accessory teeth, the length and shape of the muscular oesophagus, position of the nerve ring, deirids and excretory pore in relation to the muscular oesophagus, the position of the vulva, spicule length and the shape of the female tail. Additionally, based on new material, detailed morphological descriptions are provided for C. crocutae and C. pardalis whose original descriptions were based on fragmented material. The material from Felis lybica, currently deposited as C. subaequalis, is described as C. felinea. First-time scanning electron micrographs are presented for the 4 species confirmed in African carnivores.

The Application of Protein Concentrate Obtained from Green Leaf Biomass in Structuring Nanofibers for Delivery of Vitamin B12.

Nanofibers made of natural proteins have caught the increasing attention of food scientists because of their edibility, renewability, and possibility for various applications. The objective of this study was to prepare nanofibers based on pumpkin leaf protein concentrate (LPC) as a by-product from some crops and gelatin as carriers for vitamin B12 using the electrospinning technique. The starting mixtures were analyzed in terms of viscosity, density, surface tension, and electrical conductivity. Scanning electron micrographs of the obtained nanofibers showed a slight increase in fiber average diameter with the addition of LPC and vitamin B12 (~81 nm to 109 nm). Fourier transform infrared spectroscopy verified the physical blending of gelatin and LPC without phase separation. Thermal analysis showed the fibers had good thermal stability up to 220 °C, highlighting their potential for food applications, regardless of the thermal processing. Additionally, the newly developed fibers have good storage stability, as detected by low water activity values ranging from 0.336 to 0.376. Finally, the release study illustrates the promising sustained release of vitamin B12 from gelatin-LPC nanofibers, mainly governed by the Fickian diffusion mechanism. The obtained results implied the potential of these nanofibers in the development of functional food products with improved nutritional profiles.

Effect of Drying Conditions and Jojoba Oil Incorporation on the Selected Physical Properties of Hydrogel Whey Protein-Based Edible Films.

Edible hydrogel coatings or films in comparison to conventional food packaging materials are characterized as thin layers obtained from biopolymers that can be applied or enveloped onto the surface of food products. The use of lipid-containing hydrogel packaging materials, primarily as edible protective coatings for food applications, is recognized for their excellent barrier capacity against water vapor during storage. With the high brittleness of waxes and the oxidation of different fats or oils, highly stable agents are desirable. Jojoba oil obtained from the jojoba shrub is an ester of long-chain fatty acids and monovalent, long-chain alcohols, which contains natural oxidants α, β, and δ tocopherols; therefore, it is resistant to oxidation and shows high thermal stability. The production of hydrogel films and coatings involves solvent evaporation, which may occur in ambient or controlled drying conditions. The study aimed to determine the effect of drying conditions (temperature from 20 to 70 °C and relative humidity from 30 to 70%) and jojoba oil addition at the concentrations of 0, 0.5, 1.0, 1.5, and 2.0% on the selected physical properties of hydrogel edible films based on whey protein isolate. Homogenization resulted in stable, film-forming emulsions with bimodal lipid droplet distribution and a particle size close to 3 and 45 µm. When higher drying temperatures were used, the drying time was much shorter (minimum 2 h for temperature of 70 °C and relative humidity of 30%) and a more compact structure, lower water content (12.00-13.68%), and better mechanical resistance (3.48-3.93 MPa) of hydrogel whey protein films were observed. The optimal conditions for drying hydrogel whey protein films are a temperature of 50 °C and an air humidity of 30% over 3 h. Increasing the content of jojoba oil caused noticeable color changes (total color difference increased from 2.00 to 2.43 at 20 °C and from 2.58 to 3.04 at 70 °C), improved mechanical elasticity (the highest at 60 °C from 48.4 to 101.1%), and reduced water vapor permeability (the highest at 70 °C from 9.00·10-10 to 6.35·10-10 g/m·s·Pa) of the analyzed films. The observations of scanning electron micrographs showed the heterogeneity of the film surface and irregular distribution of lipid droplets in the film matrix.

Vallaris solanacea induces mitochondrial mediated apoptosis in HL-60 human promyelocytic leukemia cells

In the present study, the apoptosis-inducing potential of a chloroform fraction from an alcoholic extract of Vallaris solanacea aerial parts (VS) was examined using human promyelocytic leukemia HL-60 cells. We discovered a concentration and time-dependent decrease in cell growth using MTT assay. Scanning electron micrographs and fluorescence microscopy were used to observe several well-documented morphological and nuclear alterations, such as reduction in cell size, chromatin condensation, fragmentation, and the creation of cell surface blebs. A considerable rise in the Sub-G0 population was revealed by cell cycle analysis. Additionally, a dose-dependent rise in cells positive for Annexin V was observed. DCFH-DA test on VS-treated HL-60 cells showed an increase in endogenous ROS generation of up to 4.3 fold. Additionally, suppression in Bcl-2 levels and increased mitochondrial membrane depolarization in treated cells were also associated with a rise in cytosolic cytochrome-c levels that was consequently followed by the activation of the caspase cascade. Further, the DNA fragmentation assay exhibited a typical ladder formation at 25 μg/ml, which became prominent in a concentration-dependent manner. Our study revealed that VS has apoptosis-inducing potential towards HL-60 cells in vitro and is an effective candidate for further anti-cancer studies.

A comparative study of surfactant-treated natural latex foam morphology, thermodynamic relationships and energy absorption: Talalay vs. dunlop processing

This study investigates the relationships between the morphology, energy absorption, and thermodynamic parameters of natural latex foams (NLFs) processed by the Dunlop and in-house Talalay methods, using different surfactant blends. Both methods involved mixing, moulding, and heating; the additional steps for the Talalay method involved cooling and gelation, a gel-freezing technique wherein the frozen foam is exposed to CO2 gas, inducing its transformation into a gel. The morphology of the internal structure of the NLFs was studied using 2D scanning electron micrographs and 3D micro- computerised tomography images. Two different surfactants, potassium laurate and pluronic, were used. Adding the blended surfactants reduced the porosity and increased the foam density of the NLF samples, improving mechanical properties. The cell size distribution of the NLF samples prepared using the Talalay method was broader than that of those prepared using the Dunlop method. In terms of the mechanical properties and energy absorption capabilities, the Talalay process resulted in samples with 20% lower compressive strength and 7% lower energy absorption than the control sample. A power-law relationship between the energy absorption per unit volume and the compression speed of the different foam samples was also observed. The ratio of the internal energy to the total compression force of the NLF samples prepared using the Talalay process was also lower than those prepared using the Dunlop process. The empirical insights derived from this study show how the mechanical properties and process technology associated with the producing of material foams could be improved.

Dynamic microvilli sculpt bristles at nanometric scale

Organisms generate shapes across size scales. Whereas patterning and morphogenesis of macroscopic tissues has been extensively studied, the principles underlying the formation of micrometric and submicrometric structures remain largely enigmatic. Individual cells of polychaete annelids, so-called chaetoblasts, are associated with the generation of chitinous bristles of highly stereotypic geometry. Here we show that bristle formation requires a chitin-producing enzyme specifically expressed in the chaetoblasts. Chaetoblasts exhibit dynamic cell surfaces with stereotypical patterns of actin-rich microvilli. These microvilli can be matched with internal and external structures of bristles reconstructed from serial block-face electron micrographs. Individual chitin teeth are deposited by microvilli in an extension-disassembly cycle resembling a biological 3D printer. Consistently, pharmacological interference with actin dynamics leads to defects in tooth formation. Our study reveals that both material and shape of bristles are encoded by the same cell, and that microvilli play a role in micro- to submicrometric sculpting of biomaterials.

Crucial roles of specialized chitinases in elytral and hindwing cuticles construction in Leptinotarsa decemlineata.

The Colorado potato beetle (CPB), Leptinotarsa decemlineata, is a major potato (Solanum tuberosum) pest, infesting over 16 million km2 and causing substantial economic losses. The insect cuticle forms an apical extracellular matrix (ECM) envelope covering exposed organs to direct morphogenesis and confer structural protection. While select chitinase (Cht) genes have proven essential for larval development, their potential activities directing ECM remodeling underlying adult wing maturation remain undefined. We investigated the expression patterns and performed an oral RNA interference (RNAi) screen targeting 19 LdChts in late-instar L. decemlineata larvae. Subsequently, we assessed their effects on adult eclosion and wing characteristics. Knockdown of LdCht5, LdCht7, LdCht10, LdIDGF2, and LdIDGF4, as well as others from Group IV (LdCht15, LdCht12, LdCht17, and LdCht13) and Groups VII-X (LdCht2, LdCht11, LdCht1, and LdCht3), resulting in shrunken, misshapen elytra with reduced areal density, as well as transverse wrinkling and impaired wing-tip folding in hindwings. Scanning electron micrographs revealed eroded elytral ridges alongside thinned, ruptured hindwing veins, indicative of mechanical fragility post-LdCht suppression. Spectroscopic analysis uncovered biomolecular alterations underlying the elytral anomalies, including decreases in peaks representing chitin, proteins, and lipids. This loss of essential ECM components provides evidence for the fragility, wrinkling, and shrinkage observed in the RNAi groups. Our findings elucidate the crucial role of chitinases in the turnover of chitinous cuticles on beetle wings, offering insights into RNAi-based control strategies against this invasive pest. © 2024 Society of Chemical Industry.

Immobilization of an endophytic Bacillus sp. on Phragmites karka stem for lipase production in the presence of Cassia fistula seeds

AbstractEndophytic bacteria have not been reported widely for their lipolytic abilities, so they are not used for large‐scale lipase production. The purpose of this study was to explore an endophytic bacterium for the production of lipase implementing cost‐effective techniques, including the use of Cassia fistula seeds, as a substrate in the production medium and stem pieces of Phragmites karka as the immobilization matrix. The endophytic strain Bacillus sp. E4 was originally isolated from the halophytic plant Arthrocnemum macrostachyum. Bacillus sp. E4 produced 6.05 IU mL−1 lipase in the presence of powdered seeds of Cassia fistula (golden shower tree). Initial trial experiments using a one‐factor‐at‐a‐time approach led to an improvement in lipase titers to 10.05 IU mL−1. Consequently, investigations using the Plackett–Burman design suggested the influence of three significant factors – incubation period, inoculum size, and substrate concentration – on lipase production. They were optimized using the Box–Behnken design (BBD). In the response optimization experiment, strain E4 yielded 52.35 IU mL−1 lipase, which was in accordance with the predicted yield and indicated an overall 8.65 fold improvement in lipase production. To investigate the use of free cells, strain E4 was immobilized on the stem pieces of a halophytic plant, Phragmites karka, which was used for the first time as an immobilization matrix. The immobilized cells retained lipase production ability for up to six cycles with the highest yield of 110 IU mL−1, which corresponded to an improvement of more than eighteenfold. Scanning electron micrographs confirmed the colonization of E4 cells in the matrix and demonstrated the utilization of C. fistula seeds. Fourier transform infrared spectroscopy affirmed the utilization of components including fatty acids by the immobilized E4 cells. The study suggests that endophytic bacterial strains could be applied for the production of lipase with the utilization of nontraditional oil sources.

Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster

High-resolution electron microscopy of nervous systems has enabled the reconstruction of synaptic connectomes. However, we do not know the synaptic sign for each connection (i.e., whether a connection is excitatory or inhibitory), which is implied by the released transmitter. We demonstrate that artificial neural networks can predict transmitter types for presynapses from electron micrographs: a network trained to predict six transmitters (acetylcholine, glutamate, GABA, serotonin, dopamine, octopamine) achieves an accuracy of 87% for individual synapses, 94% for neurons, and 91% for known cell types across a D.melanogaster whole brain. We visualize the ultrastructural features used for prediction, discovering subtle but significant differences between transmitter phenotypes. We also analyze transmitter distributions across the brain and find that neurons that develop together largely express only one fast-acting transmitter (acetylcholine, glutamate, or GABA). We hope that our publicly available predictions act as an accelerant for neuroscientific hypothesis generation for the fly.

Deep learning-based classification of the capillary ultrastructure in human skeletal muscles

Deep learning-based classification of the capillary ultrastructure in human skeletal muscles

Novel Transmission Electron Microscopic Method to Quantify Protein Clustering on the Cell Surface.

The cell surface distribution patterns (clustering) of membrane proteins have been widely investigated in cell biology. Here we describe a novel transmission electron microscopic (TEM) protocol designed to improve the quality of information obtained about the protein distribution patterns detected. This novel method makes it possible to study the clustering of all transmembrane proteins on one half of the cytoplasmic membrane of a whole cell. To achieve better imaging, we combine various methods, including critical-point drying, fixation of gold beads with a carbon layer, and a newly developed chemical thinning method. In addition, in our image-processing algorithm, we implemented pair correlation and pair cross-correlation functions, providing more details and better quantitative accuracy in characterizing the size and numbers of possible protein clusters. © 2024 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Sample preparation and transmission electron micrography Alternate Protocol: Direct cell labeling for transmission electron micrography Basic Protocol 2: Analysis of TEM images to detect immunogold-labeled proteins.