Ecological Diversification Research Articles

Linking genes with ecological strategies in Arabidopsis thaliana.

Arabidopsis thaliana is the most prominent model system in plant molecular biology and genetics. Although its ecology was initially neglected, collections of various genotypes revealed a complex population structure, with high levels of genetic diversity and substantial levels of phenotypic variation. This helped identify the genes and gene pathways mediating phenotypic change. Population genetics studies further demonstrated that this variation generally contributes to local adaptation. Here, we review evidence showing that traits affecting plant life history, growth rate, and stress reactions are not only locally adapted, they also often co-vary. Co-variation between these traits indicates that they evolve as trait syndromes, and reveals the ecological diversification that took place within A. thaliana. We argue that examining traits and the gene that control them within the context of global summary schemes that describe major ecological strategies will contribute to resolve important questions in both molecular biology and ecology.

NICHE PARTITIONING OF THE EUROPEAN CARNIVOROUS MAMMALS DURING THE PALEOGENE

We here describe the first partial cranium of Hyaenodon leptorhynchus, the type species of the taxonomically diverse and widely distributed hypercarnivorous genus Hyaenodon (Hyaenodonta). The cranium is from the Seon Saint-Andre deposits (Marseille, France; Chattian, MP26). It is preserved in a dense red marl matrix that obscures key morphological features. CT-scans were used to reconstruct the specimen. The morphology of the cranium reinforces the homogeneity previously observed in Hyaenodon despite its specific diversity. The fossil represents a juvenile: it preserves its deciduous canines and the P3 is almost fully erupted. This pattern of delayed canine eruption is a trait shared among North American and European Hyaenodon. This discovery is the third occurrence of this species in the early Chattian: indeed, over a period of 5 My (from MP24 to MP27), only two occurrences (Rigal-Jouet and Saint-Martin de Casselvi, MP25) have been reported. Based on body mass and the general Hyaenodon body plan, we confidently identify H. leptorhynchus as a cursorial hypercarnivorous predator, hunting prey such as small artiodactyls. In order to understand the evolution of the European carnivorous faunas, we compared taxonomic diversity and the evolution of body mass in Hyaenodon and amphicyonids: this reveals stasis in Hyaenodon through the late Eocene and Oligocene, while amphicyonids show an extensive ecological diversification, especially during the Chattian.

Phylogenetic diversity in the Western Ghats biodiversity hotspot reflects environmental filtering and past niche diversification of trees

AbstractAimWe examined how contrasted climatic conditions influenced the ecological and phylogenetic diversity of tropical trees at the regional scale. Beyond the basic expectation of greater environmental filtering in currently stressful contexts, we addressed how biogeographic history and past climates contributed to shaping the distribution and diversity of extant taxa.LocationEvergreen forests of Western Ghats, India.MethodsWe evaluated the relative importance of niche‐based, historical, and spatial processes on community phylogenetic structure and turnover in 297 plots including 459 species. If niche conservatism prevails, we expected greater phylogenetic clustering under harsher or historically less stable climates, and overdispersion in opposite conditions. To test the role of environmental filtering in shaping local communities, we assessed species’ climatic niches and congruence between niche and phylogenetic diversity. To assess the imprint of ancient versus recent evolutionary constraints, we calculated mean pair‐wise (MPD) and nearest‐taxon (MNTD) phylogenetic distances, respectively.ResultsWe found non‐random phylogenetic structure depending on both current and past climatic variation. Basal community phylogenetic structure (MPD) was related to niche diversity and varied according to hydric stress: (a) northern environments filtered more closely related species, while (b) phylogenetic overdispersion suggested greater niche differentiation in stable, least‐seasonal southern habitats and at high elevations. Terminal phylogenetic structure (MNTD) did not show overdispersion. Phylogenetic turnover was driven by current abiotic factors, not space.Main conclusionsThe patterns of ecological and phylogenetic diversity likely reflect the Miocene climate shift to increasing seasonality northwards. Phylogenetic clustering under hydric stress or historical instability suggests the influence of functional conservatism, whereas overdispersion in southern forests supports the persistence of old lineages in an ancient rain forest refugium as an evolutionary museum. Overdispersion in fragmented montane forests reflects a mixture of biogeographically distinct species pools, both tropical and temperate, that characterise environmentally contrasted cores and fringes. Low phylogenetic turnover along the seasonality gradient suggests recent ecological diversification across forests with contrasted rainfall seasonality.

Ultrastructural variation and adaptive evolution of the ovipositor in the endemic Hawaiian Drosophilidae.

Ecological diversification of the endemic Hawaiian Drosophilidae has been accompanied by striking divergence in egg morphology, and ovarian structure and function. To determine how these flies successfully oviposit in a variety of breeding substrates, we used Scanning Electron Microscopy to examine the ultrastructure of the ovipositor of a sample of 65 Drosophila species and five Scaptomyza species of this hyperdiverse monophyletic group. The Drosophila species analyzed included representatives of the fungus-breeding haleakalae group, the leaf-breeding antopocerus and modified tarsus groups, the modified mouthparts species group, the nudidrosophila, and the picture wing clade; the latter sample of 41 species from four species groups included stem- and bark-breeders, as well as tree sap flux-breeders. Ovipositor length was found to vary more than 12-fold among Hawaiian drosophilids, with the longest ovipositors observed in the bark-breeding species and the shortest among the Scaptomyza and fungus-breeders. More noteworthy is the striking variation in overall shape and proportions of the ovipositor, in the shape of the apical region, and in the pattern of sensory structures or ovisensilla. Ultrastructural observations of the pair of long subapical sensilla on the ventral side identify these, for the first time, as taste bristles. Ovipositor form correlates strongly with the oviposition substrate used by the species, being of a distinctive shape and size in each case. We infer that the observed morphological divergence in the ovipositor is adaptive and the product of natural selection for successful reproduction in alternate microhabitats. The array of ovipositor forms that have evolved among the Hawaiian Drosophila species represent a series of ecomorphs that along with other divergent traits of the female reproductive system, have contributed to the successful adaptive radiation of this remarkable fauna.

Changing Ecological Opportunities Facilitated the Explosive Diversification of New Caledonian Oxera (Lamiaceae).

Phylogenies recurrently demonstrate that oceanic island systems have been home to rapid clade diversification and adaptive radiations. The existence of adaptive radiations posits a central role of natural selection causing ecological divergence and speciation, and some plant radiations have been highlighted as paradigmatic examples of such radiations. However, neutral processes may also drive speciation during clade radiations, with ecological divergence occurring following speciation. Here, we document an exceptionally rapid and unique radiation of Lamiaceae within the New Caledonian biodiversity hotspot. Specifically, we investigated various biological, ecological, and geographical drivers of species diversification within the genus Oxera. We found that Oxera underwent an initial process of rapid cladogenesis likely triggered by a dramatic period of aridity during the early Pliocene. This early diversification of Oxera was associated with an important phase of ecological diversification triggered by significant shifts of pollination syndromes, dispersal modes, and life forms. Finally, recent diversification of Oxera appears to have been further driven by the interplay of allopatry and habitat shifts likely related to climatic oscillations. This suggests that Oxera could be regarded as an adaptive radiation at an early evolutionary stage that has been obscured by more recent joint habitat diversification and neutral geographical processes. Diversification within Oxera has perhaps been triggered by varied ecological and biological drivers acting in a leapfrog pattern, but geographic processes may have been an equally important driver. We suspect that strictly adaptive radiations may be rare in plants and that most events of rapid clade diversification may have involved a mixture of geographical and ecological divergence.

Miocene biome turnover drove conservative body size evolution across Australian vertebrates.

On deep time scales, changing climatic trends can have a predictable influence on macroevolution. From evidence of mass extinctions, we know that rapid climatic oscillations can indirectly open niche space and precipitate adaptive radiation, changing the course of ecological diversification. These dramatic shifts in the global climate, however, are rare events relative to extended periods of protracted climate change and biome turnover. It remains unclear whether during gradually changing periods, shifting habitats may instead promote non-adaptive speciation by facilitating allopatry and phenotypic conservatism. Using fossil-calibrated, species-level phylogenies for five Australian radiations comprising more than 800 species, we investigated temporal trends in biogeography and body size evolution. Here, we demonstrate that gradual Miocene cooling and aridification correlates with the restricted phenotypic diversification of multiple ecologically diverse vertebrate groups. This probably occurred as species ranges became fractured and isolated during continental biome restructuring, encouraging a shift towards conservatism in body size evolution. Our results provide further evidence that abiotic changes, not only biotic interactions, may act as selective forces influencing phenotypic macroevolution.

Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources.

Microbial communities can evade competitive exclusion by diversifying into distinct ecological niches. This spontaneous diversification often occurs amid a backdrop of directional selection on other microbial traits, where competitive exclusion would normally apply. Yet despite their empirical relevance, little is known about how diversification and directional selection combine to determine the ecological and evolutionary dynamics within a community. To address this gap, we introduce a simple, empirically motivated model of eco-evolutionary feedback based on the competition for substitutable resources. Individuals acquire heritable mutations that alter resource uptake rates, either by shifting metabolic effort between resources or by increasing the overall growth rate. While these constitutively beneficial mutations are trivially favored to invade, we show that the accumulated fitness differences can dramatically influence the ecological structure and evolutionary dynamics that emerge within the community. Competition between ecological diversification and ongoing fitness evolution leads to a state of diversification-selection balance, in which the number of extant ecotypes can be pinned below the maximum capacity of the ecosystem, while the ecotype frequencies and genealogies are constantly in flux. Interestingly, we find that fitness differences generate emergent selection pressures to shift metabolic effort toward resources with lower effective competition, even in saturated ecosystems. We argue that similar dynamical features should emerge in a wide range of models with a mixture of directional and diversifying selection.

Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature.

Viral gain‐of‐function mutations frequently evolve during laboratory experiments. Whether the specific mutations that evolve in the lab also evolve in nature and whether they have the same impact on evolution in the real world is unknown. We studied a model virus, bacteriophage λ, that repeatedly evolves to exploit a new host receptor under typical laboratory conditions. Here, we demonstrate that two residues of λ’s J protein are required for the new function. In natural λ variants, these amino acid sites are highly diverse and evolve at high rates. Insertions and deletions at these locations are associated with phylogenetic patterns indicative of ecological diversification. Our results show that viral evolution in the laboratory mirrors that in nature and that laboratory experiments can be coupled with protein sequence analyses to identify the causes of viral evolution in the real world. Furthermore, our results provide evidence for widespread host‐shift evolution in lambdoid viruses.

Functional morphology of the respiratory organs of the air-breathing fish with particular emphasis on the African catfishes, Clarias mossambicus and C. gariepinus

The evolution of air-breathing and transition from water to land were pivotal events that greatly determined the ecological diversification, the advances and the successes of animal life. During their relocation onto land, the so-called bimodal breathers were literally caught at the water-air interface. Among such animals are the diverse air-breathing bony fish. Such taxa, however, strictly do not constitute the so-called ‘bridging animals’, i.e., the inaugural animals that crossed from water to land, nor are they their direct progenitors. The pioneer transitional animals were the Devonian rhipidistian amphibians that possessed a primitive lung which acquired O2 directly from air and discharged CO2 back into the same. By having particular morphological and physiological adaptations for terrestrialness, the modern amphibious- and aquatic air-breathers are heuristic analogues of how and why animals relocated from water to land. It has generally been espoused that lack or dearth of O2 in water, especially in the warm tropical one, was an elemental driver for adoption of air-breathing. There is, however, no direct causal relationship between the evolution of air-breathing and the shift onto land: the move onto land was a direct solution to the existing inimical respiratory conditions in water. This is evinced in the facts that: a) even after attaining capacity of air-breathing, an important preadaptation for life on land, some animals continued living in water while periodically accessing air, b) in the fish species that live in the well-oxygenated waters, e.g., torrential rivers, only few air-breathe and c) air-breathing has still evolved in freshwaters and seawaters, where levels of dissolved O2 are sufficiently high. Here, the structure and function of the respiratory organs of the air-breathing fish are succinctly outlined. Two African catfishes, Clarias mossambicus and C. gariepinus are highlighted.

Correction to 'The onset of ecological diversification 50 years after colonization of a crater lake by haplochromine cichlid fishes'.

Adaptive radiation research typically relies on the study of evolution in retrospective, leaving the predictive value of the concept hard to evaluate. Several radiations, including the cichlid fishes in the East African Great Lakes, have been studied extensively, yet no study has investigated the onset of the intraspecific processes of niche expansion and differentiation shortly after colonization of an adaptive zone by cichlids. Haplochromine cichlids of one of the two lineages that seeded the Lake Victoria radiation recently arrived in Lake Chala, a lake perfectly suited for within-lake cichlid speciation. Here, we infer the colonization and demographic history, quantify phenotypic, ecological and genomic diversity and diversification, and investigate the selection regime to ask if the population shows signs of diversification resembling the onset of adaptive radiation. We find that since their arrival in the lake, haplochromines have colonized a wide range of depth habitats associated with ecological and morphological expansion and the beginning of phenotypic differentiation and potentially nascent speciation, consistent with the very early onset of an adaptive radiation process. Moreover, we demonstrate evidence of rugged phenotypic fitness surfaces, indicating that current ecological selection may contribute to the phenotypic diversification.

Patterns of niche diversification in south-east Asian crocodile newts

Niche conservatism underlies the process of speciation in amphibians on the global scale. However, high tropical diversity is partly attributable to niche shifts within evolutionary lineages. Crocodile newts (genera Echinotriton and Tylototriton) are a monophyletic group endemic to south-east Asia, and are one of the few lineages of urodeles that appear in tropical regions. Here, we examined the patterns of ecological diversification within the crocodile newts based on 207 records of 23 species. The niche space was described according to topographic, climatic variables (temperature, rainfall, and seasonality) and forest cover. Our analysis showed that the occurrence of most of these species was strongly associated with the precipitation regime and seasonality. The diversification patterns of the crocodile newts are complex, showing both conservatism and divergence. These patterns can be related to the Tibetan uplift phase during the Neogene, resulting in the emergence of new montane habitats and subsequent changes in the palaeo-drainage system and climate. The range of ecological diversification within a lineage is possibly the result of several interacting processes, including environmental heterogeneity, the regional climatic history, and physiological constraints on species.

The onset of ecological diversification 50 years after colonization of a crater lake by haplochromine cichlid fishes.

Adaptive radiation research typically relies on the study of evolution in retrospective, leaving the predictive value of the concept hard to evaluate. Several radiations, including the cichlid fishes in the East African Great Lakes, have been studied extensively, yet no study has investigated the onset of the intraspecific processes of niche expansion and differentiation shortly after colonization of an adaptive zone by cichlids. Haplochromine cichlids of one of the two lineages that seeded the Lake Victoria radiation recently arrived in Lake Chala, a lake perfectly suited for within-lake cichlid speciation. Here, we infer the colonization and demographic history, quantify phenotypic, ecological and genomic diversity and diversification, and investigate the selection regime to ask if the population shows signs of diversification resembling the onset of adaptive radiation. We find that since their arrival in the lake, haplochromines have colonized a wide range of depth habitats associated with ecological and morphological expansion and the beginning of phenotypic differentiation and potentially nascent speciation, consistent with the very early onset of an adaptive radiation process. Moreover, we demonstrate evidence of rugged phenotypic fitness surfaces, indicating that current ecological selection may contribute to the phenotypic diversification.

Mining, land restoration and sustainable development in isolated islands: An industrial ecology perspective on extractive transitions on Nauru.

In this empirically grounded perspective, we explore how, if managed correctly, mining might go beyond a straight conversion of finite natural capital to financial resources. We suggest a process where mineral extraction could act as a catalyst for more diversified growth and even serve as a basis to restore forms of 'natural capital' it had previously diminished. The case in point-small in scale but significant in consequence-is the particularly challenging instance of the small-island state of Nauru, which has a very negative history of socio-ecological impacts of phosphate mining. Yet, the degraded landscape requires capital investment which could be reaped from restoration of the land using revenues generated from exporting the waste rock pinnacles as branded household counter-tops and pavement stone products with an "island provenance premium". Furthermore, we use an industrial ecology method to show that Nauru's secondary phosphate can be shown to be less environmentally impactful than comparable phosphate from other sources. This has potential for further "green branding" of the Island's products. We contend that implementing such a restoration approach that harnesses the remaining mineral capital with care has the potential, to diversify the island's economy from one dependent on extractive industries and donors to agroforestry, fishing and tourism. A holistic approach is offered that considers prudent use of Nauru's remaining mineral resources towards an agenda of ecological restoration and economic diversification that will allow the island to prosper after the phosphates it has traditionally relied upon are depleted.

High Fecundity, Rapid Development and Selfing Ability in Three Species of Viviparous Land Snails Phaedusinae (Gastropoda: Stylommatophora: Clausiliidae) from East Asia.

Anna Sulikowska-Drozd, Takahiro Hirano, Shu-Ping Wu, and Barna Páll-Gergely (2018) Life history traits are important yet understudied aspects of ecological diversification in land snail faunas. To acquire information for comparative analysis of gastropod life cycles, we conducted experimental breeding of three viviparous clausiliids from Japan and Taiwan. Under laboratory conditions, Tauphaedusa sheridani (Pfeiffer, 1866), T. tau (O. Boettger, 1877) and Stereophaedusa (Breviphaedusa) jacobiana (Pilsbry, 1902) featured similar times to complete shell growth (12-16 weeks), age of first reproduction (23-24 weeks) and annual fecundity (143- 173 neonates per pair of snails). The maximum number of eggs retained in genital tract reaches nine for T. sheridani, 11 for T. tau, and seven for S. jacobiana. The ratio between average shell height of neonate and adult varied between 13.5% for T. tau, 13.9% for T. sheridani, and 16.7% for S. jacobiana. All species were able to self-fertilize. Exposure to long drought affects intrauterine embryo development in all species; additionally, it results in parent and embryo mortality in S. jacobiana. Observed differences in the structure of the egg envelope among studied species point to greater than expected differentiation of developmental processes in viviparous Phaedusinae of East Asia.

Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation.

Acquisition of ecologically relevant genes is common among ocean bacteria, but whether it has a major impact on genome evolution in marine environments remains unknown. Here, we analyzed the core genomes of 16 phylogenetically diverse and ecologically relevant bacterioplankton lineages, each consisting of up to five genomes varying at the strain level. Statistical approaches identified from each lineage up to ∼50 loci showing anomalously high divergence at synonymous sites, which is best explained by recombination with distantly related organisms. The enriched gene categories in these outlier loci match well with the characteristics previously identified as the key phenotypes of these lineages. Examples are antibiotic synthesis and detoxification in Phaeobacter inhibens, exopolysaccharide production in Alteromonas macleodii, hydrocarbon degradation in Marinobacter hydrocarbonoclasticus, and cold adaptation in Pseudoalteromonas haloplanktis Intriguingly, the outlier loci feature polysaccharide catabolism in Cellulophaga baltica but not in Cellulophaga lytica, consistent with their primary habitat preferences in macroalgae and beach sands, respectively. Likewise, analysis of Prochlorococcus showed that photosynthesis-related genes listed in the outlier loci are found only in the high-light-adapted ecotype and not in the low-light adapted ecotype. These observations strongly suggest that recombination with distant relatives is a key mechanism driving the ecological diversification among marine bacterial lineages.IMPORTANCE Acquisition of new metabolic genes has been known as an important mechanism driving bacterial evolution and adaptation in the ocean, but acquisition of novel alleles of existing genes and its potential ecological role have not been examined. Guided by population genetic theories, our genomic analysis showed that divergent allele acquisition is prevalent in phylogenetically diverse marine bacterial lineages and that the affected loci often encode metabolic functions that underlie the known ecological roles of the lineages under study.

Modulation of plant cytokinin levels in the Wolbachia‐free leaf‐mining species Phyllonorycter mespilella

AbstractAs phytohormones lie at the very core of molecular mechanisms controlling the plant physiology and development, they have long been hypothesized to be involved in insect‐induced plant manipulations. Cytokinins (CKs) are phytohormones now widely recognized to be utilized by leaf‐mining and gall‐inducing insects in the control of the physiology of their host plant. In some leaf‐mining moth species, larvae can supply the hormones themselves, bacterial symbionts contributing to the production of CKs. Our objective was to investigate whether closely related leaf‐miner species sharing the same ecological niche but differing in their Wolbachia infection status develop similar strategies to manipulate their host plant. An extensive identification and quantification of CKs has been used to elucidate physiological patterns relevant for the plant–insect interactions. Our results show that modulation of plant CK levels is impaired in the Wolbachia‐free leaf‐mining moth Phyllonorycter mespilella (Hübner) (Lepidoptera: Gracillariidae) contrasting with results previously observed in the closely related moth species Phyllonorycter blancardella (Fabricius) that produce and deliver CKs to the plant through an intricate interaction with Wolbachia. Our study suggests that mechanisms underlying colonization of the host plant and adaptation to fluctuating environmental conditions are different between the two leaf‐miner species and that P. mespilella larvae most likely do not produce CKs. This species rather only buffers the degradation of CKs naturally occurring during the senescence of leaves leading to few active CKs being maintained at a sufficiently high level to induce and maintain a ‘green island’ phenotype (photosynthetically active green patches in otherwise senescing leaves). This study further provides converging experimental evidence pointing toward the influence of bacterial symbionts in the ability of leaf‐mining moths to control the physiology of their host plant with consequences for their ecology and evolutionary diversification.

Ecological and evolutionary diversification in the Australo-Papuan scrubwrens (Sericornis) and mouse-warblers (Crateroscelis), with a revision of the subfamily Sericornithinae (Aves: Passeriformes: Acanthizidae)

Understanding how the complex geotectonic and climatic history of the Australo-Papuan region has promoted the ecological and evolutionary diversification of its avifauna remains a challenge. Outstanding questions relate to the nature and timing of biogeographical connections between Australia and the emerging island of New Guinea and the mechanisms by which distinctive altitudinal replacement sequences have evolved amongst congeneric species in montane New Guinea. Here, we combine analyses of phylogenetic and eco-morphological data to investigate ecological and evolutionary patterns of diversification in the largely mesic-adapted Australo-Papuan scrubwrens (Sericornis) and mouse-warblers (Crateroscelis). We find evidence of ecological convergence and present a revised taxonomic and systematic treatment of the subfamily integrating information from new (ND2) and existing molecular phylogenetic reconstructions. Biogeographical connections indicate at least three phases of faunal interchange between Australia and New Guinea commencing in the mid to late Miocene. We also find little support for the proposed time dependency of ecological sorting mechanisms linked to divergence in foraging niche amongst altitudinal replacements. Instead, physiological adaptations to hypoxia and increased thermal efficiency at higher altitudes may better account for observed patterns of diversification in montane New Guinea. Indirect support for this hypothesis is derived from molecular clock calibrations that indicate a pulse of diversification across the Miocene-Pliocene boundary coincident with a phase of rapid mountain uplift. Simple ecological and climatic models appear inadequate for explaining observed patterns and mechanisms of diversification in the New Guinean montane avifauna. Further insights will require multidisciplinary research integrating geotectonic, palaeoclimatic, genetic, ecological and physiological approaches.

Dietary Adaptations of the Feeding Apparatus in Bats

Diet evolution is considered a major driver of morphological differences and species diversification in mammals, but quantitative tests of morphological adaptation and diversification are scarce. Bats are an ideal system to investigate dietary adaptations; they represent 20% of all mammals, encompass nearly the full spectrum of mammal diets, and have highly diverse cranial morphologies and feeding behaviors. Here, we present research aimed at identifying whether and how the bat feeding apparatus has diversified in conjunction with diet evolution. We combine modern laboratory and field approaches to quantify and map the evolution of skull shape, muscle morphology, and feeding performance across major bat lineages. These methods include: Computed Tomography (CT) scanning and Diffusible Iodine Contrast Enhanced CT scanning, three‐dimensional biomechanical modeling, in vivo bite force measurements, and statistical tests of evolutionary adaptive regimes. With these detailed anatomical and performance datasets, we have been able to identify potential drivers and mechanisms of morphological and functional diversification of the bat feeding apparatus. Analyses of selective regimes indicate that the current diversity of bat skull shapes is best explained by adaptive evolution for both dietary and sensory demands, with striking differences among bats that use different forms of echolocation, or none at all, and among diet specialists. Species that specialize on different diets differ in skull size and shape and in the morphology of their jaw muscles, including physiological cross‐sectional areas, origin and insertion areas, and fiber architecture. Importantly, our biomechanical models indicate that these morphological differences translate into differences in feeding performance metrics that are relevant to food processing, including maximum bite force and gape. For example, for their size, species with a foreshortened rostrum and large temporalis muscles are able to generate high bite forces at the expense of a wide gape, and this allows them to consume tough but relatively small food items. Altogether, these results illuminate the potential drivers and mechanisms of morphological and ecological diversification in bats, and possibly other mammals.Support or Funding InformationNational Science Foundation award 1557125This abstract is from the Experimental Biology 2018 Meeting. There is no full text article associated with this abstract published in The FASEB Journal.

Structure versus time in the evolutionary diversification of avian carotenoid metabolic networks.

Historical associations of genes and proteins are thought to delineate pathways available to subsequent evolution; however, the effects of past functional involvements on contemporary evolution are rarely quantified. Here, we examined the extent to which the structure of a carotenoid enzymatic network persists in avian evolution. Specifically, we tested whether the evolution of carotenoid networks was most concordant with phylogenetically structured expansion from core reactions of common ancestors or with subsampling of biochemical pathway modules from an ancestral network. We compared structural and historical associations in 467 carotenoid networks of extant and ancestral species and uncovered the overwhelming effect of pre-existing metabolic network structure on carotenoid diversification over the last 50million years of avian evolution. Over evolutionary time, birds repeatedly subsampled and recombined conserved biochemical modules, which likely maintained the overall structure of the carotenoid metabolic network during avian evolution. These findings explain the recurrent convergence of evolutionary distant species in carotenoid metabolism and weak phylogenetic signal in avian carotenoid evolution. Remarkable retention of an ancient metabolic structure throughout extensive and prolonged ecological diversification in avian carotenoid metabolism illustrates a fundamental requirement of organismal evolution - historical continuity of a deterministic network that links past and present functional associations of its components.

Transient Activation of Apomixis in Sexual Neotriploids May Retain Genomically Altered States and Enhance Polyploid Establishment.

Polyploid genomes evolve and follow a series of dynamic transfigurations along with adaptation and speciation. The initial formation of a new polyploid individual within a diploid population usually involves a triploid bridge, a two-step mechanism of cell fusions between ubiquitous (reduced) and rare (unreduced) gametes. The primary fusion event creates an intermediate triploid individual with unbalanced genome sets, a situation of genomic-shock characterized by gene expression dysregulation, high dosage sensitivity, disturbed cell divisions, and physiological and reproductive attributes drastically altered. This near-sterile neotriploid must produce (even) eupolyploids through secondary fusion events to restore genome steadiness, meiotic balance, and fertility required for the demographic establishment of a nascent lineage. Natural conditions locate several difficulties to polyploid establishment, including the production of highly unbalanced and rarely unreduced (euploid) gametes, frequency-dependent disadvantages (minority cytotype exclusion), severe fitness loss, and ecological competition with diploid parents. Persistence and adaptation of neopolyploids depend upon genetic and phenotypic novelty coupled to joint selective forces that preserve shock-induced genomic changes (subgenome homeolog partitioning) and drive meiotic (reproductive) stabilization and ecological diversification. Thus, polyploid establishment through the triploid bridge is a feasible but not ubiquitous process that requires a number of low-probability events and singular circumstances. Yet, frequencies of polyploids suggest that polyploid establishment is a pervasive process. To explain this disparity, and supported in experimental evidence, I propose that situations like hybridization and ploidy-state transitions associated to genomic shock and substantial developmental alterations can transiently activate apomixis as a mechanism to halt genomic instability and cancel factors restraining neopolyploid’s sexual fertility, particularly in triploids. Apomixis –as a temporal alternative to sex– skip meiosis and syngamy, and thus can freeze genomic attributes, avoid unbalanced chromosomal segregation and increase the formation of unreduced euploid gametes, elude frequency-dependent reproductive disadvantages by parthenogenetic development of the embryo and permissive development of endosperm during seed formation, and increase the effective population size of the neopolyploid lineage favoring the formation rate of eupolyploids compared to aneuploids. The subsequent action of genome resilience mechanisms that alleviate transcriptomic shock and selection upon gene interactions might restore a stable meiosis and sexual fertility within few generations, as observed in synthetic polyploids. Alternatively, provided that resilience mechanisms fail, the neopolyploid might retain apomixis and hold genomically and transcriptionally altered states for many generations.