Dwarf Mutant Research Articles

Role of polyamines in plant growth regulation of Rht wheat mutants

Besides their protective role, polyamines also serve as signalling molecules. However, further studies are needed to elucidate the polyamine signalling pathways, especially to identify polyamine-regulated mechanisms and their connections with other regulatory molecules. Reduced height (Rht) genes in wheat are often used in breeding programs to increase harvest index. Some of these genes are encoding DELLA proteins playing role in gibberellic acid signalling. The aim of the present paper was to reveal how the mutations in Rht gene modify the polyamine-regulated processes in wheat. Wild type and two Rht mutant genotypes (Rht 1: semi-dwarf; Rht 3: dwarf mutants) were treated with polyamines. Polyamine treatments differently influenced the polyamine metabolism, the plant growth parameters and certain hormone levels (salicylic acid and abscisic acid) in these genotypes. The observed distinct metabolism of Rht 3 may more likely reflect more intensive polyamine exodus from putrescine to spermidine and spermine, and the catabolism of the higher polyamines. The lower root to shoot translocation of putrescine can contribute to the regulation of polyamine pool, which in turn may be responsible for the observed lack of growth inhibition in Rht 3 after spermidine and spermine treatments. Lower accumulation of salicylic acid and abscisic acid, plant hormones usually linked with growth inhibition, in leaves may also be responsible for the diminished negative effect of higher polyamines on the shoot growth parameters observed in Rht 3. These results provide an insight into the role of polyamines in plant growth regulation based on the investigation of gibberellin-insensitive Rht mutants.

Retrotransposon-mediated DELLA transcriptional reprograming underlies semi-dominant dwarfism in foxtail millet

Retrotransposons account for a large proportion of the genome and genomic variation, and play key roles in creating novel genes and diversifying the genome in many eukaryotic species. Although retrotransposons are abundant in plants, their roles had been underestimated because of a lack of research. Here, we characterized a gibberellin Acid (GA)-insensitive dwarf mutant, 84133, in foxtail millet. Map-based cloning revealed a 5.5-kb Copia-like retrotransposon insertion in DWARF1 (D1), which encodes a DELLA protein. Transcriptional analysis showed that the Copia retrotransposon mediated the transcriptional reprogramming of D1 leading to a novel N-terminal-deleted truncated DELLA transcript that was putatively driven by Copia's LTR, namely D1-TT, and another chimeric transcript. The presence of D1-TT was confirmed by protein immunodetection analysis. Furthermore, D1-TT protein was resistant to GA3 treatment compared with the intact DELLA protein due to its inability to interact with the GA receptor, SiGID1. Overexpression of D1-TT in foxtail millet resulted in dwarf plants, confirming that it determines the dwarfism of 84133. Thus, our study documents a rare instance of long terminal repeat (LTR) retrotransposon-mediated transcriptional reprograming in the plant kingdom. These results shed light on the function of LTR retrotransposons in generating new gene functions and genetic diversity.

MUTATION BREEDING OF A RICE DWARF LINE WITH SLIGHT YIELD LOSS UNDER DROUGHT STRESS

Lack of adequate water leading to drought stress is a common constraint in upland cultivation system ofrice. a rice mutant line (MT58) was developed in previous research after mutagenesis of cv. Neda by ethylmethane sulfonate (EMS) and selected for dwarfism (18 cm shorter than Neda). The extent of its molecularchanges relative to parental cultivar was assessed by SSR and ISSR markers, and the response of the linealong with parental cultivar and another mutant line (MTA) to mild and severe water deficit, was evaluated ina field experiment. a molecular assessment by using 41 SSR markers showed that stunt line MT58 had significantmolecular difference with two other lines as confirmed by cluster analysis. ISSR assay also proved theconsiderable mutational effect of EMS on two mutant lines compared to original wild line. Field experimentsrevealed that limited irrigation caused mild to severe decrease in all the studied traits including chlorophyllcontents. In both mild and sever water stress (S1 and S2) dwarf mutant MT58 had not significant differencesin plant yield from parental cultivar Neda. In mild water stress cultivar Neda and mutant line MT58, respectively,showed highest (14%) and lowest (3%) yield loss, while in sever water stress mutant lines MTA andMT58, respectively, showed highest (33%) and lowest (19%) yield loss. In severe stress, cultivar Neda hadhighest plant height, tiller number and plant yield, and mutant MT58 had highest panicle length, total kernelsper panicle, fertile kernels and chlorophyll contents. Reduction in chlorophyll content at drought stress conditionwas correlated with yield loss (0.64 and 0.697 for chl.a and chl.b, respectively). The results of this researchobviously confirm that mutant line MT58 despite of its stunt figure did not show yield difference fromits parental cultivar in drought stress.

Identification and Genetic Characterization of a Novel Tillering Dwarf Semi-Sterile Mutant tdr 1 in Rice

Tillering and plant height are important components of plant architecture and grain production in rice. We identified a novel high tillering, dwarf and semi-sterile mutant, as named tdr1 in a rice maintainer line E20 derived from the cross between between IR68888B and Luxiang 90. The investigation of tiller dynamic in the tdr1 line displayed 3 different phases: rapid increasing of tillers in the vegetative growth stage, producing no new tillers in the transition stage from the vegetative growth to reproductive growth, and regeneration of new tillers after heading. The assay of hormones showed the significant reduction of brassinolide level and no change of the levels of gibberellic acid, cytokinin and strigolactone in the tdr1 line. Genetic analysis indicated the phenotype of high tillering, dwarfism and semi-sterility is controlled by a recessive gene in several different segregation populations. The TDR1 gene was mapped in the 105 kb interval between RM3288 and RM6590 on chromosome 4. Cloning of TDR1 gene would provide a new opportunity to uncover the molecular mechanism of the development of plant height and tiller in rice.

Translational genomics using Arabidopsis as a model enables the characterization of pennycress genes through forward and reverse genetics.

Thlaspi arvense (pennycress) has the potential for domestication as a new oilseed crop. Information from an extensive body of research on the related plant species Arabidopsis can be used to greatly speed this process. Genome-scale comparisons in this paper documented that pennycress and Arabidopsis share similar gene duplication. This finding led to the hypothesis that it should be possible to isolate Arabidopsis-like mutants in pennycress. This proved to be true, as forward genetic screens identified floral and vegetative pennycress mutants that were similar to mutants found in Arabidopsis. Extending this approach, it was shown that most of the pennycress genes responsible for the formation of oxidized tannins could be rapidly identified. The causative mutations in the pennycress mutants could be identified either by PCR amplification of candidate genes or through whole-genome sequencing (WGS) analysis. In all, WGS was used to characterize 95 ethyl methane sulfonate mutants, which revealed a mutation rate of 4.09 mutations per megabase. A sufficient number of non-synonymous mutations were identified to create a mutant gene index that could be used for reverse genetic approaches to identify pennycress mutants of interest. As proof of concept, a Ta-max3-like dwarf mutant and Ta-kcs5/cer60-like wax mutants deficient in the biosynthesis of long chain fatty acids were identified. Overall, these studies demonstrate that translational genomics can be used to promote the domestication of pennycress. Furthermore, the ease with which important findings could be made in pennycress makes this species a new potential model plant.

Effects of Strigolactones on Grain Yield and Seed Development in Rice

Strigolactones (SLs) are well known as a class of endogenous phytohormones that regulate tiller bud outgrowth. Reduction of inorganic phosphate (Pi) induces the accumulation of SLs, which inhibit tiller bud outgrowth in wild-type (WT) rice plants, but not in SL mutants. This suggests that SLs are important for plant adaptation to Pi-deficient conditions. Thus, we investigated the effects of SLs on grain yield and seed size in WT and dwarf (d) mutant rice plants treated with various Pi concentrations. In both WT and d mutants, plant growth, chlorophyll levels, panicle number, number of hulls, and total grain number decreased as Pi decreased, indicating that SL is not required to mediate these Pi responses. The d mutants produced more panicles than the WT control, but there was no increase in grain yield, and the seed-setting rate decreased. Removal of outgrowing tillers did not affect grain yield in d mutants. GR24 (a synthetic SL) treatment rescued grain yield in d mutants. The d3 and d53 mutants had the lowest grain yields among d mutants. Furthermore, the endosperm of d mutants was 25% smaller than that of WT plants; there were no significant differences in embryo length between WT and d mutant plants, but the endosperm cell area of the d mutants was approximately 30% smaller than that of WT plants. We propose that SLs control grain yield and rice endosperm development.

Characterization of lingering hope, a new brachytic mutant in sunflower (Helianthus annuus L.) with altered salicylic acid metabolism

Dwarf mutants are useful to elucidate regulatory mechanisms of plant growth and development. A brachytic mutant, named lingering hope (linho), was recently isolated from sunflower (Helianthus annuus). The aim of this report is the characterization of the mutant through genetic, morphometric, physiological and gene expression analyses. The brachytic trait is controlled by a recessive gene. The reduction of plant height depends on shorter apical internodes. The mutant shows an altered ratio length/width of the leaf blade, chlorosis and defects in inflorescence development. The brachytic trait is not associated to a specific hormonal deficiency, but an increased level of several gibberellins is detected in leaves. Notably, the endogenous salicylic acid (SA) content in young leaves of the mutant is very high despite a low level of SA 2-O-β-d-glucoside (SAG). The CO2 assimilation rate significantly decreases in the second pair of leaves of linho, due to effects of both stomatal and non-stomatal constraints. In addition, the reduction of both actual and potential photochemical efficiency of photosystem II is associated with a reduced content of chlorophylls and carotenoids, a lower chlorophyll a to chlorophyll b ratio and a higher SA content. In comparison to wild type, linho shows a different pattern of gene expression with respect two pathogenesis-related genes and two genes involved in SA biosynthesis and SA metabolism. linho is the first mutant described in sunflower with altered SA metabolism and this genotype could be useful to improve information about the effects of high endogenous content of SA on plant development, reproductive growth and photosynthesis, in a major crop.

Non-targeted metabolic profiling of BW312 Hordeum vulgare semi dwarf mutant using UHPLC coupled to QTOF high resolution mass spectrometry

Barley (Hordeum vulgare) is the fourth crop cultivated in the world for human consumption and animal feed, making it important to breed healthy and productive plants. Among the threats for barley are lodging, diseases, and pathogens. To avoid lodging, dwarf and semi-dwarf mutants have been selected through breeding processes. Most of these mutants are affected on hormonal biosynthesis or signalling. Here, we present the metabolic characterization of a brassinosteroid insensitive semi-dwarf mutant, BW312. The hormone profile was determined through a targeted metabolomics analysis by UHPLC-triple quadrupole-MS/MS, showing an induction of gibberellic acid and jasmonic acid in the semi-dwarf mutant. A non-targeted metabolomics analysis by UHPLC-QTOF-MS/MS revealed a differential metabolic profile, with 16 and 9 metabolites showing higher intensities in the mutant and wild-type plants respectively. Among these metabolites, azelaic acid was identified. Gibberellic acid, jasmonic acid, and azelaic acid are involved in pathogen resistance, showing that this semi-dwarf line has an enhanced basal pathogen resistance in absence of pathogens, and therefore is of interest in breeding programs to fight against lodging, but also probably to increase pathogen resistance.

Whole Genome Characterization of a Few EMS-Induced Mutants of Upland Rice Variety Nagina 22 Reveals a Staggeringly High Frequency of SNPs Which Show High Phenotypic Plasticity Towards the Wild-Type.

The Indian initiative, in creating mutant resources for the functional genomics in rice, has been instrumental in the development of 87,000 ethylmethanesulfonate (EMS)-induced mutants, of which 7,000 are in advanced generations. The mutants have been created in the background of Nagina 22, a popular drought- and heat-tolerant upland cultivar. As it is a pregreen revolution cultivar, as many as 573 dwarf mutants identified from this resource could be useful as an alternate source of dwarfing. A total of 541 mutants, including the macromutants and the trait-specific ones, obtained after appropriate screening, are being maintained in the mutant garden. Here, we report on the detailed characterizations of the 541 mutants based on the distinctness, uniformity, and stability (DUS) descriptors at two different locations. About 90% of the mutants were found to be similar to the wild type (WT) with high similarity index (>0.6) at both the locations. All 541 mutants were characterized for chlorophyll and epicuticular wax contents, while a subset of 84 mutants were characterized for their ionomes, namely, phosphorous, silicon, and chloride contents. Genotyping of these mutants with 54 genomewide simple sequence repeat (SSR) markers revealed 93% of the mutants to be either completely identical to WT or nearly identical with just one polymorphic locus. Whole genome resequencing (WGS) of four mutants, which have minimal differences in the SSR fingerprint pattern and DUS characters from the WT, revealed a staggeringly high number of single nucleotide polymorphisms (SNPs) on an average (16,453 per mutant) in the genic sequences. Of these, nearly 50% of the SNPs led to non-synonymous codons, while 30% resulted in synonymous codons. The number of insertions and deletions (InDels) varied from 898 to 2,595, with more than 80% of them being 1–2 bp long. Such a high number of SNPs could pose a serious challenge in identifying gene(s) governing the mutant phenotype by next generation sequencing-based mapping approaches such as Mutmap. From the WGS data of the WT and the mutants, we developed a genic resource of the WT with a novel analysis pipeline. The entire information about this resource along with the panicle architecture of the 493 mutants is made available in a mutant database EMSgardeN22 (http://14.139.229.201/EMSgardeN22).

DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling

BackgroundPlant height and leaf angle are important determinants of yield in rice (Oryza sativa L.). Genes involved in regulating plant height and leaf angle were identified in previous studies; however, there are many remaining unknown factors that affect rice architecture.ResultsIn this study, we characterized a dwarf mutant named ds1 with small grain size and decreased leaf angle,selected from an irradiated population of ssp. japonica variety Nanjing35. The ds1 mutant also showed abnormal floral organs. ds1 plants were insensitive to BL treatment and expression of genes related to BR signaling was changed. An F2 population from a cross between ds1 and indica cultivar 93–11 was used to fine map DS1 and to map-based clone the DS1 allele, which encoded an EMF1-like protein that acted as a transcriptional regulator. DS1 was constitutively expressed in various tissues, and especially highly expressed in young leaves, panicles and seeds. We showed that the DS1 protein interacted with auxin response factor 11 (OsARF11), a major transcriptional regulator of plant height and leaf angle, to co-regulate D61/OsBRI1 expression. These findings provide novel insights into understanding the molecular mechanisms by which DS1 integrates auxin and brassinosteroid signaling in rice.ConclusionThe DS1 gene encoded an EMF1-like protein in rice. The ds1 mutation altered the expression of genes related to BR signaling, and ds1 was insensitive to BL treatment. DS1 interacts with OsARF11 to co-regulate OsBRI1 expression.

Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.

Tiller number and plant height are two of the main features of plant architecture that directly influence rice yield. Auxin and miR156, an extensively studied small RNA (smRNA), are both broadly involved in plant development and physiology, suggesting a possible relationship between the two. In this study, we identified a rice T-DNA insertion cluster and dwarf (cd) mutant that has an increased tiller number and reduced plant height. The T-DNA insertion was in close proximity to the miR156f gene and was associated with its up-regulation. Plants overexpressing miR156f resembled the cd mutant. In contrast, plants overexpressing an miR156f target mimic (MIM156fOE) had a reduced tiller number and increased height. Genetic analysis showed that OsSPL7 is a target of miR156f that regulates plant architecture. Plants overexpressing OsSPL7 had a reduced tiller number, while OsSPL7 RNAi plants had an increased tiller number and a reduced height. We also found that OsSPL7 binds directly to the OsGH3.8 promoter to regulate its transcription. Overexpression of OsGH3.8 and OsGH3.8 RNAi partially complemented the MIM156fOE and cd mutant phenotypes, respectively. Our combined data show that the miR156f-OsSPL7-OsGH3.8 pathway regulates tiller number and plant height in rice, and this pathway may allow crosstalk between miR156 and auxin.

CLAVATA1-type receptor-like kinase CsCLAVATA1 is a putative candidate gene for dwarf mutation in cucumber.

Dwarf mutations have played vital roles in elucidating the regulatory molecular mechanisms of plant height. In this study, we identified a mutant named Csdw, whose mutagenesis was induced by ethyl methyl sulfonate in cucumber, and this mutant exhibited a dwarf phenotype with a reduced internode length because of the reduction of cell division in the main stem. The dwarf phenotype of Csdw could be partially rescued through GA3 application, and endogenous GA3 levels from the stem of Csdw decreased distinctly. Genetic analysis showed that Csdw was attributed to a recessive gene. The MutMap and Kompetitive Allele Specific PCR genotyping results revealed that Csa3G872760 (CsCLAVATA1), encoding a CLAVATA1-type receptor-like kinase, was a putative candidate gene for dwarf mutation in cucumber. The expression of CsCLAVATA1 in the stem of Csdw was lower than that of wild-type plants. Therefore, CsCLAVATA1 could regulate the dwarf phenotype in cucumber.

Identification and genetic mapping for rht-DM, a dominant dwarfing gene in mutant semi-dwarf maize using QTL-seq approach.

Semi-dwarfism is an agronomically important trait in breeding for stable high yields and for resistance to damage by wind and rain (lodging resistance). Many QTLs and genes causing dwarf phenotype have been found in maize. However, because of the yield loss associated with these QTLs and genes, they have been difficult to use in breeding for dwarf stature in maize. Therefore, it is important to find the new dwarfing genes or materials without undesirable characters. The objectives of this study were: (1) to figure out the inheritance of semi-dwarfism in mutants; (2) mapping dwarfing gene or QTL. Maize inbred lines '18599' and 'DM173', which is the dwarf mutant derived from the maize inbred line '173' through 60Co-γ ray irradiation. F2 and BC1F1 population were used for genetic analysis. Whole genome resequencing-based technology (QTL-seq) were performed to map dwarfing gene and figured out the SNP markers in predicted region using dwarf bulk and tall bulk from F2 population. Based on the polymorphic SNP markers from QTL-seq, we were fine-mapping the dwarfing gene using F2 population. In F2 population, 398 were dwarf plants and 135 were tall plants. Results of χ2 tests indicated that the ratio of dwarf plants to tall plants was fitted to 3:1 ratio. Furthermore, the χ2 tests of BC1F1 population showed that the ratio was fitted to 1:1 ratio. Based on QTL-seq, the dwarfing gene was located at the region from 111.07 to 124.56Mb of chromosome 9, and we named it rht-DM. Using traditional QTL mapping with SNP markers, the rht-DM was narrowed down to 400kb region between SNP-21 and SNP-24. The two SNPs were located at 0.43 and 0.11cM. Segregation analysis of F2 and BC1F1 indicated that the dwarfing gene was likely a dominant gene. This dwarfing gene was located in the region between 115.02 and 115.42Mb on chromosome 9.

Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele.

SummaryThe tomato PROCERA gene encodes a DELLA protein, and loss‐of‐function mutations derepress growth. We used CRISPR/Cas9 and a single guide RNAs (sgRNA) to target mutations to the PROCERA DELLA domain, and recovered several loss‐of‐function mutations and a dominant dwarf mutation that carries a deletion of one amino acid in the DELLA domain. This is the first report of a dominant dwarf PROCERA allele. This allele retains partial responsiveness to exogenously applied gibberellin. Heterozygotes show an intermediate phenotype at the seedling stage, but adult heterozygotes are as dwarfed as homozygotes.

The maize lilliputian1 (lil1) gene, encoding a brassinosteroid cytochrome P450 C-6 oxidase, is involved in plant growth and drought response.

Brassinosteroids (BRs) are plant hormones involved in many developmental processes as well as in plant-environment interactions. Their role was investigated in this study through the analysis of lilliputian1-1 (lil1-1), a dwarf mutant impaired in BR biosynthesis in maize (Zea mays). We isolated lil1-1 through transposon tagging in maize. The action of lil1 was investigated through morphological and genetic analysis. Moreover, by comparing lil1-1 mutant and wild-type individuals grown under drought stress, the effect of BR reduction on the response to drought stress was examined. lil1-1 is a novel allele of the brassinosteroid-deficient dwarf1 (brd1) gene, encoding a brassinosteroid C-6 oxidase. We show in this study that lil1 is epistatic to nana plant1 (na1), a BR gene involved in earlier steps of the pathway. The lill-1 mutation causes alteration in the root gravitropic response, leaf epidermal cell density, epicuticular wax deposition and seedling adaptation to water scarcity conditions. Lack of active BR molecules in maize causes a pleiotropic effect on plant development and improves seedling tolerance of drought. BR-deficient maize mutants can thus be instrumental in unravelling novel mechanisms on which plant adaptations to abiotic stress are based.

Phenotypic analysis of a dwarf and deformed flower3 (ddf3) mutant in rice (Oryza sativa L.) and characterization of candidate genes

Abstracts Dwarf mutants are the crucial resources for molecular biology research and rice breeding. Here, a rice mutant, dwarf and deformed flower3 (ddf3), was identified in tissue culture of Oryza sativa cv. Dongjin. Compared with wild type, the ddf3 mutant exhibited severe dwarfism, a greater number of tillers and significantly decreased fertility. In addition, leaf length, panicle length, and grain length, were significantly shorter. All internodes of ddf3 were shorter than those of wild type, and histological analysis revealed that internode cell elongation was significantly inhibited in ddf3. In the ddf3 mutant, pollen activity was significantly decreased, and the development of most stigmas was abnormal. Genetic analysis indicated that the ddf3 mutant phenotypes are controlled by a single or tightly linked nuclear genes. Using an F2 mapping population generated from a cross between ddf3 and Yangdao 6 (9311), the DDF3 gene was mapped to a 45.21-kb region between insertion-deletion (InDel) markers M15 and M16 on the long arm of chromosome 7. Sequencing revealed a 13.98-kb-deletion in this region in the ddf3 mutant genome that resulted in the complete or partial deletion of ZF (DHHC type zinc finger protein), EP (expressed protein), and FH2 (actin-binding FH2 domain-containing protein) genes. Quantitative RT-PCR analyses revealed that in wild type, the transcript levels of FH2 were almost the same in all organs, while ZF was mainly expressed in the panicle, and no expression of EP was detected in any organ. Based on these results, ZF and FH2 could be potential DDF3 candidate genes involved in the regulation of rice morphology and flower organ development. Our work has laid the foundation for future functional analysis of these candidate genes and has provided a profitable gene resource for rice breeding for increased fertility in the future.

Identification of the dwarf gene GmDW1 in soybean (Glycine max L.) by combining mapping-by-sequencing and linkage analysis

Key messageGmDW1 encodes an ent-kaurene synthase (KS) acting at the early step of the biosynthesis pathway for gibberellins (GAs) and regulates the development of plant height in soybean.Plant height is an important component of plant architecture, and significantly affects crop breeding practices and yield. Here, we report the characterization of an EMS-induced dwarf mutant (dw) of the soybean cultivar Zhongpin 661 (ZDD23893). The dw mutant displayed reduced plant height and shortened internodes, both of which were mainly attributed to the longitudinally decreased cell length. The bioactive GA1 (gibberellin A1) and GA4 (gibberellin A4) were not detectable in the stem of dw, and the dwarf phenotype could be rescued by treatment with exogenous GA3. Genetic analysis showed that the dwarf trait of dw was controlled by a recessive nuclear gene. By combining linkage analysis and mapping-by-sequencing, we mapped the GmDW1 gene to an approximately 460-kb region on chromosome (Chr.) 8, containing 36 annotated genes in the reference Willliams 82 genome. Of these genes, we identified two nonsynonymous single nucleotide polymorphisms (SNPs) that are present in the encoding regions of Gmdw1 and Glyma.08G165100 in dw, respectively. However, only the SNP mutation (T>A) at nucleotide 1224 in Gmdw1 cosegregated with the dwarf phenotype. GmDW1 encodes an ent-kaurene synthase, and was expressed in various tissues including root, stem, and leaf. Further phenotypic analysis of the allelic variations in soybean accessions strongly indicated that GmDW1 is responsible for the dwarf phenotype in dw. Our results provide important information for improving our understanding of the genetics of soybean plant height and crop breeding.

The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice

Plant height has a major effect on grain yield in crops such as rice (Oryza sativa), and the hormone gibberellic acid (GA) regulates many developmental processes that feed into plant height. Rice ELONGATED UPPERMOST INTERNODE1 (Eui1) encodes a GA-deactivating enzyme governing elongation of the uppermost internode. The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height. Here, we identified a dominant dwarf mutant, dEui1, caused by the deletion of an RY motif-containing cis-silencing element (SE1) in the intron of Eui1. Detailed genetic and molecular analysis of SE1 revealed that this intronic cis element recruits at least one trans-acting repressor complex, containing the B3 repressors OsVAL2 and OsGD1, the SAP18 co-repressor, and the histone deacetylase OsHDA710, to negatively regulate the expression of Eui1. This complex generates closed chromatin at Eui1, suppressing Eui1 expression and modulating GA homeostasis. Loss of SE1 or dysfunction of the complex components impairs histone deacetylation and H3K27me3 methylation of Eui1 chromatin, thereby increasing Eui1 transcription and decreasing bioactive GA, producing dwarfism in rice. Together, our results reveal a novel silencing mechanism in which the intronic cis element SE1 negatively regulates Eui1 expression via repressor complexes that modulate histone deacetylation and/or methylation.

Retraction Note to: Dwarf mutations in grass pea (Lathyrus sativus L.): origin, morphology, inheritance and linkage studies

Retraction Note to: Dwarf mutations in grass pea (Lathyrus sativus L.): origin, morphology, inheritance and linkage studies

Strigolactones affect the translocation of nitrogen in rice

Strigolactones (SLs) are involved in the nutrient-dependent control of plant root and shoot architecture. The total sufficient uptake of nitrogen (N), and also its appropriate distribution, is essential for the normal growth and development of plants; however, the effect of SLs on N translocation in plants remains unknown. Here, the SL-signaling mutant dwarf 3 (d3), the biosynthesis mutant dwarf 10 (d10), and wild-type (WT) rice (Oryza sativa ssp. Japonica cv. Nipponbare) were used to investigate the relationship between N nutrition and the regulatory role of SLs. Relative to WT, the d10 mutant had a higher N concentration in older leaves but a lower N concentration in younger leaves, while the d3 mutant showed a considerably lower N concentration, especially in its younger leaves under normal N levels. By contrast, both d3 and d10 mutants contained higher N in their leaves under N-deficient conditions. The 15N uptake and distribution analysis revealed that the significantly different N concentrations among the d3, d10, and WT plants only occurred in their leaves, not in their roots. Moreover, when provided with an external supply of GR24, the synthetic SLs altered the leaf N distribution of the d10 mutant but not those of the d3 mutant and WT. Together, these results suggested that the effect of SLs on plant growth and development may be linked to N translocation to different shoot tissues.