The article presents the results of DNA microsatellite polymorphism with the use of a commercial kit containing 16 markers: Rt6, BMS1788, Rt30, Rt1, Rt9, C143, Rt7, OheQ, FCB193, C217, Rt24, BMS745, NVHRT16, T40 и C276. The study object is domestic reindeer procured from Chukotka AO to Nizhnekolymsky district of the Republic of Sakha (Yakutia) to refresh the blood of Chukotka reindeer under the rehabilitation program and improvement of reindeer breeding condition. Allele frequency, indicators of observed and expected heterozygosity, fix index and polymorphism were calculated. The calculation of allele frequencies showed that microsatellite markers have a wide range of alleles and high informative value for detecting genetic differences between animals and groups of animals. A total of 116 alleles were identified, which gave an average of 7.25 alleles per locus, and the number of effective alleles was 3.9. Indicators of observed and expected heterozygosity were 0.713 and 0.691. The highest number of alleles 12 and 13 were found in locus OheQ и BMS1788 and the smallest in locus C 143, which had 2 alleles. Also, 3 alleles were identified in locus C217 and C32. The results of the study can contribute to receiving information on the genetic structure of the Chukchi reindeer and using an improvement population program in Yakutia. Moreover, the results can be used in methods development and DNA test rules in the northern reindeer breeding.
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