Domain State Research Articles

Capturing the blue-light activated state of the Phot-LOV1 domain from Chlamydomonas reinhardtii using time-resolved serial synchrotron crystallography.

Light-oxygen-voltage (LOV) domains are small photosensory flavoprotein modules that allow the conversion of external stimuli (sunlight) into intracellular signals responsible for various cell behaviors (e.g. phototropism and chloroplast relocation). This ability relies on the light-induced formation of a covalent thioether adduct between a flavin chromophore and a reactive cysteine from the protein environment, which triggers a cascade of structural changes that result in the activation of a serine/threonine (Ser/Thr) kinase. Recent developments in time-resolved crystallography may allow the activation cascade of the LOV domain to be observed in real time, which has been elusive. In this study, we report a robust protocol for the production and stable delivery of microcrystals of the LOV domain of phototropin Phot-1 from Chlamydomonas reinhardtii (CrPhotLOV1) with a high-viscosity injector for time-resolved serial synchrotron crystallography (TR-SSX). The detailed process covers all aspects, from sample optimization to data collection, which may serve as a guide for soluble protein preparation for TR-SSX. In addition, we show that the crystals obtained preserve the photoreactivity using infrared spectroscopy. Furthermore, the results of the TR-SSX experiment provide high-resolution insights into structural alterations of CrPhotLOV1 from Δt = 2.5 ms up to Δt = 95 ms post-photoactivation, including resolving the geometry of the thioether adduct and the C-terminal region implicated in the signal transduction process.

Effects of quenching on domain switching and electric field-induced phase transformations in Na0.5Bi0.5TiO3-NaNbO3 ceramics

Quenching from high temperatures has been identified as a useful means to enhance the piezoelectric properties and thermal stability of bismuth-based perovskite ferroelectrics. In the present work, it is demonstrated that quenching leads to improvement of depolarization temperature, ferroelectric and piezoelectric properties in Na0.5Bi0.5TiO3-NaNbO3 (NBT-0.1NN) ceramics. In-situ synchrotron x-ray diffraction measurements indicated an irreversible transformation from cubic to coexisting cubic and rhombohedral phases during the application of a high electric field, for both as-sintered and quenched ceramics. These results confirm the non-ergodic relaxor ferroelectric nature of the materials. DC poling induced a transformation to single-phase rhombohedral structure in both cases, with highly textured domain configurations. These well-oriented ferroelectric domain states were relatively stable under subsequent bipolar electric field cycling. For the pre-poled NBT-0.1NN ceramics, the quenched samples were found to exhibit the highest intrinsic (lattice strain) and extrinsic (domain switching) contributions to electrostrain, due to the increased rhombohedral distortion.

Impact of serious adverse drug reactions on the quality of life of patients on highly active antiretroviral therapy in Maiduguri, northeast Nigeria: a four-year retrospective study.

ABSTRACT Serious adverse drug reactions (sADRs) have a serious impact on the progress being made in providing antiretroviral therapy. The presence of HIV/AIDS and its complications associated with sADRs, has a negative effect on the quality of life (QoL) of people living with HIV/AIDS (PLWHA). This was a descriptive retrospective cohort study of 400 adult HIV patients in which the QoL of PLWHA with sADRs was compared to patients that did not experience ADR who had been on antiretroviral therapy (ART) was followed up for 48 months using the WHOQOL-HIV BREF to measure QoL. Out of 400 patients, 373 (93.25%) respondents completed the study with an overall mean age was 40.8 years (SD ± 8.64). One hundred and ninety-nine patients (53.4%) reported to have experiencing sADR. The response consistently showed significantly higher mean scores in the QoL of patients who had no ADRs in the psychological, social and environments state of health domains compared to those who had ADRs with mean scores (P = 0.000, 0.037 and 0.028), respectively. This study revealed significantly higher scores in patients who had no ADRs compared to those who had ADRs. Low QoL due to serious ADR may add additional burden to HIV disease and complications, and the related discrimination often faced by PLWHA. This study would help clinicians pay serious attention to identifying and promptly managing ADR.

Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.

The mitochondrial chaperonin, mitochondrial heat shock protein 60 (mtHsp60), promotes the folding of newly imported and transiently misfolded proteins in the mitochondrial matrix, assisted by its co-chaperone mtHsp10. Despite its essential role in mitochondrial proteostasis, structural insights into how this chaperonin progresses through its ATP-dependent client folding cycle are not clear. Here, we determined cryo-EM structures of a hyperstable disease-associated human mtHsp60 mutant, V72I. Client density is identified in three distinct states, revealing interactions with the mtHsp60 apical domains and C termini that coordinate client positioning in the folding chamber. We further identify an asymmetric arrangement of the apical domains in the ATP state, in which an alternating up/down configuration positions interaction surfaces for simultaneous recruitment of mtHsp10 and client retention. Client is then fully encapsulated in mtHsp60-10, revealing prominent contacts at two discrete sites that potentially support maturation. These results identify distinct roles for the apical domains in coordinating client capture and progression through the chaperone cycle, supporting a conserved mechanism of group I chaperonin function.

Tunable topological domain structures in high-density PbTiO3 nanodots array

In this work, we demonstrated that tunable topological domain structures, e.g., center-type domains and skyrmion-like polar bubbles, can be generated at room temperature in high-density epitaxial PbTiO3 nanodots fabricated via the template-assisted tailoring of thin films. These topological domain structures can be manipulated electrically by applying an appropriate bias on the conductive atomic force microscopy tip, allowing for writing, erasing, and rewriting of topological domains into the nanodot. Moreover, ring-shaped conductive channels are observed around the center-type domain states. These findings provide a playground for further exploring their emerging functionalities and application potentials for nanoelectronics.

Optical Control of In-Plane Domain Configuration and Domain Wall Motion in Ferroelectric and Ferroelastic Materials.

The sensitivity of ferroelectric domain walls to external stimuli makes them functional entities in nanoelectronic devices. Specifically, optically driven domain reconfiguration with in-plane polarization is advantageous and thus is highly sought. Here, we show the existence of in-plane polarized subdomains imitating a single domain state and reversible optical control of its domain wall movement in a single-crystal of ferroelectric BaTiO3. Similar optical control in the domain configuration of nonpolar ferroelastic material indicates that long-range ferroelectric polarization is not essential for the optical control of domain wall movement. Instead, flexoelectricity is found to be an essential ingredient for the optical control of the domain configuration, and hence, ferroelastic materials would be another possible candidate for nanoelectronic device applications.

Magnetic properties and load of potentially toxic heavy metals carried by the coarse and fine fractions of indoor dust

The granulometric fractions of indoor dust, categorized as coarse (grain size of 1.00–0.071 mm) and fine (grain size <0.071 mm), were investigated to discern variations in their magnetic properties and contents of potentially toxic heavy metals. Monthly dust samples were gathered from January 2021 to December 2022 from a private apartment situated on the outskirts of a large urban agglomeration (Warsaw, Poland). To assess indoor dust, several magnetic parameters, including mass-specific magnetic susceptibility, were employed. Portable X-ray fluorescence measurements were utilized to evaluate the enrichment of granulometric fractions in harmful heavy metals. The study reveals a comparable composition of magnetic minerals irrespective of grain size (magnetite and metallic iron), with variations observed in the domain state of magnetic particles (contribution of single-domain (SD) grains to multi-domain (MD)). Seasonal fluctuations were predominantly noted in the distribution of the fine fraction's mass during the warm season (May–July). A notable increase was observed in the fine fraction's mass contribution to the total dust mass compared to the winter season (December and February). The fine fraction was highly enriched in toxic metals, including Pb, Cr, Cu, Mn, Fe, and Sr. Pollution Load index is 6–8 for the fine fraction and 2–8 for the coarse fraction. The increase in the fine fraction mass induces linear changes in magnetic susceptibility, likely associated with the rise in anthropogenic magnetic particles. This finding holds significant implications for human health, as fine particles laden with toxic heavy metals can enter the human respiratory tract causing adverse health effects.

Femtosecond Laser-Induced Transient Magnetization Enhancement and Ultrafast Demagnetization Mediated by Domain Wall Origami.

Femtosecond laser-induced ultrafast magnetization dynamics are all-optically probed for different remanent magnetic domain states of a [Co/Pt]22 multilayer sample, thus revealing the tunability of the direct transport of spin angular momentum across domain walls. A variety of different magnetic domain configurations (domain wall origami) at remanence achieved by applying different magnetic field histories are investigated by time-resolved magneto-optical Kerr effect magnetometry to probe the ultrafast magnetization dynamics. Depending on the underlying domain landscape, the spin-transport-driven magnetization dynamics show a transition from typical ultrafast demagnetization to being fully dominated by an anomalous transient magnetization enhancement (TME) via a state in which both TME and demagnetization coexist in the system. Thereby, the study reveals an extrinsic channel for the modulation of spin transport, which introduces a route for the development of magnetic spin-texture-driven ultrafast spintronic devices.

Current-driven fast magnetic octupole domain-wall motion in noncollinear antiferromagnets

Antiferromagnets (AFMs) have the natural advantages of terahertz spin dynamics and negligible stray fields, thus appealing for use in domain-wall applications. However, their insensitive magneto-electric responses make controlling them in domain-wall devices challenging. Recent research on noncollinear chiral AFMs Mn3X (X = Sn, Ge) enabled us to detect and manipulate their magnetic octupole domain states. Here, we demonstrate a current-driven fast magnetic octupole domain-wall (MODW) motion in Mn3X. The magneto-optical Kerr observation reveals the Néel-like MODW of Mn3Ge can be accelerated up to 750 m s-1 with a current density of only 7.56 × 1010 A m-2 without external magnetic fields. The MODWs show extremely high mobility with a small critical current density. We theoretically extend the spin-torque phenomenology for domain-wall dynamics from collinear to noncollinear magnetic systems. Our study opens a new route for antiferromagnetic domain-wall-based applications.

Resolving the Interpretation of Magnetic Coercivity Components From Backfield Isothermal Remanence Curves Using Unmixing of Non‐Linear Preisach Maps: Application to Loess‐Paleosol Sequences

AbstractUnmixing of remanent magnetization curves, either isothermal remanent magnetization (IRM) or backfield IRM, is widely used in rock magnetic and environmental magnetic studies to discriminate between magnetic coercivity components of different origins. However, the wide range of physical properties of natural magnetic particles gives rise to an ambiguous interpretation of these components. To reduce this ambiguity and provide a straightforward interpretation of coercivity components in terms of domain state, interactions, and constituent magnetic phases, we combined backfield IRM unmixing with unmixing of nonlinear Preisach maps for two typical mid‐latitude northern hemisphere loess‐paleosol sequences. Both backfield IRM and nonlinear Preisach maps unmixing are based on the same non‐parametric algorithm, and provide similar endmembers (EMs) in the two sections studied. The first EM (EM1) has a low median coercivity (∼21 mT) and is a non‐interacting single domain (SD) magnetite/maghemite of pedogenic origin. The second EM (EM2) has a moderate median coercivity (∼60 mT) and is a mixture of pseudo‐single domain/multidomain, SD magnetite/maghemite and non‐interacting SD hematite, all of eolian origin. The same EM1 found in both sections suggests that this component's grain size and coercivity are independent of pedogenesis intensity. The same EM2 indicates that a similar magnetic population is being transported and deposited, irrespective of the dust source area and loess granulometry. The approach outlined here provides strong evidence that non‐parametric backfield IRM unmixing isolates physically realistic EMs. Unmixing nonlinear Preisach maps elucidates these EMs in terms of domain states and their constituent magnetic phases.

Theory of strain phase equilibria and diagrams

Chemical phase equilibria and phase diagrams are well established and have served as indispensable guides for designing materials through chemical tuning. However, a general thermodynamic theory for strain phase equilibria remains elusive despite extensive studies which have revealed dramatic impacts of mechanical strain on the stability of phases and domain states in solid-state materials. Here, we establish the thermodynamic theory of strain equilibria and a general framework for efficiently constructing multidomain and multiphase diagrams of arbitrarily strained solids under incoherent conditions. As examples, we obtain temperature-strain phase diagrams of ferroelectric PbTiO3, strongly correlated VO2, and unconventional ferroelectric Hf0.5Zr0.5O2. We reveal the analogs of the Gibbs phase rules, multiple- and multi-critical points, common-tangent construction, and level rule in strain equilibria to those in the familiar chemical phase equilibria. Our strain equilibria theory offers a powerful framework for predicting the thermodynamic stability of structural phases and domains in strained solids and for guiding the strain engineering of their functional properties.

Revealing the Role of Spacer Layer in Domain Dynamics of Hf0.5Zr0.5O2 Thin Films for Ferroelectrics

AbstractHfO2‐based ferroelectrics offer promises for next‐generation nonvolatile nanoscale devices owing to excellent CMOS compatibility and robust ferroelectricity at the nanoscale. However, fundamentally understanding the mechanism of polarization reversal and domain dynamics is challenging because the role of the spacer layer at the domain level in HfO2‐based ferroelectrics remains elusive. Here, it is realized that visualization of time‐resolved dynamics of nanoscale domain configurations in the epitaxial Hf0.5Zr0.5O2 thin films using phase‐field simulations. Scale‐free domain independent switchability (namely, irreducible stable polar domain down to 1 nm lateral size) and sharp domain walls that originate from weak interactions between adjacent domains characterized by the reduced gradient energy coefficient, which unravels the mesoscale mechanism of spacer layer in domain dynamics are demonstrated. Meanwhile, it is revealed that 180° polarization switching is dominated by the nucleation of a new domain with a high nucleation density, well described by the nucleation‐limited switching model. This study not only provides a fundamental mesoscale mechanism of the spacer layer, but also stimulates further studies on the manipulation of ultra‐scaled single domain state for designing high‐density and fast‐speed HfO2‐based ferroelectric memory.

Molecular Mechanism of Phosphorylation-Mediated Impacts on the Conformation Dynamics of GTP-Bound KRAS Probed by GaMD Trajectory-Based Deep Learning.

The phosphorylation of different sites produces a significant effect on the conformational dynamics of KRAS. Gaussian accelerated molecular dynamics (GaMD) simulations were combined with deep learning (DL) to explore the molecular mechanism of the phosphorylation-mediated effect on conformational dynamics of the GTP-bound KRAS. The DL finds that the switch domains are involved in obvious differences in conformation contacts and suggests that the switch domains play a key role in the function of KRAS. The analyses of free energy landscapes (FELs) reveal that the phosphorylation of pY32, pY64, and pY137 leads to more disordered states of the switch domains than the wild-type (WT) KRAS and induces conformational transformations between the closed and open states. The results from principal component analysis (PCA) indicate that principal motions PC1 and PC2 are responsible for the closed and open states of the phosphorylated KRAS. Interaction networks were analyzed and the results verify that the phosphorylation alters interactions of GTP and magnesium ion Mg2+ with the switch domains. It is concluded that the phosphorylation pY32, pY64, and pY137 tune the activity of KRAS through changing conformational dynamics and interactions of the switch domains. We anticipated that this work could provide theoretical aids for deeply understanding the function of KRAS.

Assessing lunar paleointensity variability during the 3.9 - 3.5 Ga high field epoch

Numerous paleomagnetic studies suggest that a lunar dynamo, with surface field intensities potentially as high as 40-100 µT, existed between ∼3.9 Ga and ∼3.5 Ga. This period is referred to as the High Field Epoch (HFE). However, the debate over the origin of magnetization recorded in lunar rocks still persists. In addition, whether the Moon could have sustained a continuously strong dynamo during the HFE remains unclear. To unravel the origin of magnetization preserved in lunar rocks and to better characterize the evolution of the ancient lunar dynamo, we conducted a comprehensive set of experiments including rock magnetic tests, electron microscopy, and paleomagnetic investigations on four HFE-aged Apollo 11 mare basalt samples: 10003, 10044, 10069, and 10071. Rock magnetic experiments and electron microscopy indicate that the remanence carriers are kamacite grains of varying sizes and domain states. Sample 10003 recorded a paleointensity of 54.10 ± 4.66 µT. Sample 10044, which was shocked (peak pressure >5 GPa), did not preserve a stable high coercivity remanent magnetization. Samples 10069 and 10071 recorded paleointensities of 61.46 ± 26.09 µT and 10.69 ± 2.87 µT, respectively. A series of hydrostatic pressure experiments, isothermal remanent magnetization (IRM) acquisition experiments, and viscous remanent magnetization (VRM) tests preclude the possibility of our samples containing shock remanent magnetization from transient impact-generated fields, IRM acquisition from exposure to spacecraft fields, and VRM acquisition from exposure to the Earth magnetic field. Overall, our study suggests that the source of these magnetizations was likely the lunar dynamo and may indicate nearly order-of-magnitude magnetic field fluctuations during the HFE.

When Structured Light Encounters Liquid Crystals

AbstractStructured light refers to the light field tailored by various degrees of freedom including intensity, phase, and polarization states in both spatial and temporal domains, which may greatly vitalize the technologies in both optics, such as the next‐generation optical communication as well as subwavelength imaging and the materials science in both fabrication and characterization. The structured characteristics of the structure light need materials also with structured optical properties that can generate or manipulate structured light in a straightforward way, which can be well satisfied by liquid crystals, a soft mater that can self‐assemble into tunable ordered structures through external stimuli. This review summarizes the research progress of the liquid crystal‐based devices used in structured light generations and modulations, including the well‐established techniques in the market, like the spatial light modulator, q‐plate and the liquid crystal integrated optical metasurfaces. Especially, light‐matter interactions are discussed from the topological view of both the structured light and the liquid crystal structures. Such a perfect matching in topology makes the liquid crystal a promising star together with structured light in future optic and photonic technologies.

Magnetic domain structures in ultrathin Bi2Te3/CrTe2 heterostructures

Abstract Chromium tellurium compounds are important two-dimensional van der Waals ferromagnetic materials with high Curie temperature and chemical stability in air, which is promising for applications in spintronic devices. Here, high-quality spin-orbital-torque (SOT) device, Bi2Te3/CrTe2 heterostructure was epitaxially grown on Al2O3 (0001) substrates. Anomalous Hall measurements indicate the existence of strong ferromagnetism in this device with the CrTe2 thickness down to 10 nm. In order to investigate its micromagnetic structure, cryogenic magnetic force microscope (MFM) was utilized to measure the magnetic domain evolutions at various temperatures and magnetic fields. The virgin domain state of the device shows a worm-like magnetic domain structure with the size around 0.6 ~ 0.8 µm. Larger irregular-shape magnetic domains (＞1µm) can be induced and pinned, after the field is increased to coercive field and ramped back to low fields. The temperature-dependent MFM signals exhibit a nice mean-field-like ferromagnetic transition with Curie temperature around 201.5 K, indicating a robust ferromagnetic ordering. Such device can be potentially implemented in future magnetic memory technology.

Possibility of Lunar Crustal Magmatism Producing Strong Crustal Magnetism

AbstractThe Moon generated a long‐lived core dynamo magnetic field, with intensities at least episodically reaching ∼10–100 μT during the period prior to ∼3.56 Ga. While magnetic anomalies observed within impact basins are likely attributable to the presence of impactor‐added metal, other anomalies such as those associated with lunar swirls are not as conclusively linked to exogenic materials. This has led to the hypothesis that some anomalies may be related to magmatic features such as dikes, sills, and laccoliths. However, basalts returned from the Apollo missions are magnetized too weakly to produce the required magnetization intensities (&gt;0.5 A/m). Here, we test the hypothesis that subsolidus reduction of ilmenite within or adjacent to slowly cooled mafic intrusive bodies could locally enhance metallic FeNi contents within the lunar crust. We find that reduction within hypabyssal dikes with high‐Ti or low‐Ti mare basalt compositions can produce sufficient FeNi grains to carry the minimum &gt;0.5 A/m magnetization intensity inferred for swirls, especially if ambient fields are &gt;10 μT or if fine‐grained Fe‐Ni metals in the pseudo‐single domain grain size range are formed. Therefore, there exists a possibility that certain magnetic anomalies exhibiting various shapes such as linear, swarms, and elliptical patterns may be magmatic in origin. Our study highlights that the domain state of the magnetic carriers is an under‐appreciated factor in controlling a rock's magnetization intensity. The results of this study will help guide interpretations of lunar crustal field data acquired by future rovers that will traverse lunar magnetic anomalies.

The Impact of Local Strain Fields in Noncollinear Antiferromagnetic Films.

Antiferromagnets hosting structural or magnetic order that breaks time reversal symmetry are of increasing interest for "beyond von Neumann" computing applications because the topology of their band structure allows for intrinsic physical properties, exploitable in integrated memory and logic function. One such group are the noncollinear antiferromagnets. Essential for domain manipulation is the existence of small net moments found routinely when the material is synthesized in thin film form and attributed to symmetry breaking caused by spin canting, either from the Dzyaloshinskii-Moriya interaction or from strain. Although the spin arrangement of these materials makes them highly sensitive to strain, there is little understanding about the influence of local strain fields caused by lattice defects on global properties, such as magnetization and anomalous Hall effect. This premise is investigated by examining noncollinear antiferromagnetic films that are either highly lattice mismatched or closely matched to their substrate. In either case, edge dislocation networks are generated and for the former case, these extend throughout the entire film thickness, creating large local strain fields. These strain fields allow for finite intrinsic magnetization in seemingly structurally relaxed films and influence the antiferromagnetic domain state and the intrinsic anomalous Hall effect.

A novel and ubiquitous miRNA-involved regulatory module ensures precise phosphorylation of RNA polymerase II and proper transcription.

Proper transcription orchestrated by RNA polymerase II (RNPII) is crucial for cellular development, which is rely on the phosphorylation state of RNPII's carboxyl-terminal domain (CTD). Sporangia, developed from mycelia, are essential for the destructive oomycetes Phytophthora, remarkable transcriptional changes are observed during the morphological transition. However, how these changes are rapidly triggered and their relationship with the versatile RNPII-CTD phosphorylation remain enigmatic. Herein, we found that Phytophthora capsici undergone an elevation of Ser5-phosphorylation in its uncanonical heptapeptide repeats of RNPII-CTD during sporangia development, which subsequently changed the chromosomal occupation of RNPII and primarily activated transcription of certain genes. A cyclin-dependent kinase, PcCDK7, was highly induced and phosphorylated RNPII-CTD during this morphological transition. Mechanistically, a novel DCL1-dependent microRNA, pcamiR1, was found to be a feedback modulator for the precise phosphorylation of RNPII-CTD by complexing with PcAGO1 and regulating the accumulation of PcCDK7. Moreover, this study revealed that the pcamiR1-CDK7-RNPII regulatory module is evolutionarily conserved and the impairment of the balance between pcamiR1 and PcCDK7 could efficiently reduce growth and virulence of P. capsici. Collectively, this study uncovers a novel and evolutionary conserved mechanism of transcription regulation which could facilitate correct development and identifies pcamiR1 as a promising target for disease control.

Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains

Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains