Animal conservation requires understanding animal-habitat relationships. The integration of novel remote sensing platforms such as Light Detection and Ranging (LiDAR) technology has dramatically improved the resolution of insight when evaluating animal-habitat relationships by characterizing forest structure. However, conventional LiDAR collection (e.g., airborne or terrestrial laser scanning) may be limited by small spatial extents and logistical constraints (e.g., budget) associated with sampling. NASA’s Global Ecosystem Dynamics Investigation (GEDI) mission provides an alternative and complement to conventional LiDAR sampling with globally available waveform LiDAR, which is being collected to characterize vertical and horizontal structure of Earth’s forests. Forest carnivores are wide-ranging species occupying forested ecosystems, and are generally associated with vertical and horizontal forest structure for their survival and reproduction. We evaluated patterns in occurrence and habitat use of forest carnivores, which included Pacific martens (Martes caurina), Rocky Mountain red foxes (Vulpes vulpes macroura), and coyotes (Canis latrans) and patterns in occurrence of their prey; American red squirrels (Tamiasciurus hudsonicus) and snowshoe hares (Lepus americanus). Camera trap data were collected during the 2014–2017 winters in the Greater Yellowstone Ecosystem in Wyoming, USA. Our objectives were to (1) combine GEDI samples with multispectral satellite imagery from Landsat 8 to upscale vertical forest structure metrics; (2) assess the relative importance of environmental characteristics influencing occurrence and habitat use of forest-associated predators and prey; and (3) determine if GEDI-derived variables aided our efforts in characterizing animal-environment relationships. We used Random Forest regression models to upscale GEDI samples across our study area and implemented a multi-tiered approach using generalized linear mixed effect models to simultaneously evaluate animal-environment relationships and how GEDI-derived metrics improved the animal-habitat models. GEDI-derived metrics of relative height and foliage height diversity improved our animal-environment models and were among the strongest covariates (effect sizes were 1.3–1.8 times larger than the next closest) in the coyote, red squirrel, and snowshoe hare models. All five species were influenced to some degree by the frequency of rebaiting a camera trap and varying conditions of snow depth. Collectively, our work indicates forest canopy height and complexity variables significantly improved our ability to assess the importance of forest characteristics on forest carnivores and their prey. Indeed, there is an untapped opportunity to enhance animal ecology and conservation planning with continued integration of GEDI information with freely available satellite data to characterize attributes of forest structure across expansive areas.