Abstract In this study, we extended the original work of Kotwicki et al. (2013. Combining bottom trawl and acoustic data to model acoustic dead zone correction and bottom trawl efficiency parameters for semipelagic species. Canadian Journal of Fisheries and Aquatic Sciences 70: 208–219) to jointly estimate the acoustic dead-zone correction, the bias ratio, and the gear efficiency for multiple species by using simultaneously collected acoustic and bottom-trawl data. The model was applied to cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) in the Barents Sea and demonstrated a better or similar performance compared with a single species approach. The vertical distribution of cod and haddock was highly variable and was influenced by light level, water temperature, salinity, and depth. Temperature and sunlight were the most influential factors in this study. Increase in temperature resulted in decreasing catch and fish density in the acoustic dead zone (ADZ), while increasing sun altitude (surrogate for light level) increased the catch and fish density in the ADZ. The catch and density of haddock in the ADZ also increased at the lowest sun altitude level (shortly after midnight). Generally, the density of cod and haddock changed more rapidly in the ADZ than in the catch (from bottom to the effective fishing height) indicating the importance of modelling fish density in the ADZ. Finally, the uncorrelated variability in the annual residual variance of cod and haddock further strengthen the conclusion that species vertical distribution changes frequently and that there are probably many other unobserved environmental variables that affect them independently.
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