Distinct Patterns Of Variation Research Articles

Distribution, diversity and genetic structure of alders (Alnus lusitanica and A. glutinosa) in Spain

Alders (Alnus spp., Betulaceae) are keystone pioneer species in riparian habitats. In the Mediterranean Basin, where the diploid Alnus glutinosa coexists with the recently discovered tetraploid A. lusitanica, the distribution, diversity and genetic structure of alder species is unknown. The main objectives of this study were to report the distribution of A. glutinosa and A. lusitanica, quantify the local genetic diversity of populations and explore the presence of putative hybrids resulting from the coexistence of A. lusitanica and A. glutinosa individuals in Spain. We assessed 627 individuals from 22 natural alder populations by combining chromosome counts, flow cytometry and microsatellite markers (SSRs) analyses. The ploidy analysis, validated through chromosome counts, revealed the presence of 92 diploid and 535 tetraploid trees from three A. glutinosa and 18 A. lusitanica pure populations, respectively. Notably, no hybrids were detected, not even in Assa, the only population where both species co-occur. The occurrence of mixed ploidy level in alder is reported for the first time in Spain (Assa, Logroño, within the Ebro basin). SSR analysis revealed robust genetic differentiation between the two species and distinctive patterns of variation within A. glutinosa. The high level of differentiation observed was supported by the most probable population clustering determined through pca and structure analyses, along with the identification of a high number of private alleles. For A. lusitanica, the results revealed three distinct genetic groups, geographically distributed. Positive genetic and geographical distance correlations indicated that differentiation could have been driven by isolation by distance. In light of the results, A. lusitanica is the most representative, widespread and genetically variable alder species in Spain, and A. glutinosa is restricted to the north-east of the country. The Ebro riverbank is a contact zone between A. lusitanica and A. glutinosa species, in which no evidence of hybridization was detected yet. Finally, with focus on management, our findings may suggest considering A. lusitanica as a new species, which should be regulated by the forest reproductive material legislation.

Assessing spatiotemporal change in coral reef social-ecological systems.

Coral reef resilience is eroding at multiple spatial scales globally, with broad implications for coastal communities, and is thus a critical challenge for managing marine social-ecological systems (SESs). Many researchers believe that external stressors will cause key coral reefs to die by the end of the 21st century, virtually eliminating essential ecological and societal benefits. Here, we propose the use of resilience-based approaches to understand the dynamics of coral reef SESs and subsequent drivers of coral reef decline. Previous research has demonstrated the effectiveness of these methods, not only for tracking environmental change, but also for providing warning in advance of transitions, possibly allowing time for management interventions. The flexibility and utility of these methods make them ideal for assessing complex systems; however, they have not been used to study aquatic ecosystem dynamics at the global scale. Here, we evaluate these methods for examining spatiotemporal change in coral reef SESs across the global seascape and assess the subsequent impacts on coral reef resilience. We found that while univariate indicators failed to provide clear signals, multivariate resilience-based approaches effectively captured coral reef SES dynamics, unveiling distinctive patterns of variation throughout the global coral reef seascape. Additionally, our findings highlight global spatiotemporal variation, indicating patterns of degraded resilience. This degradation was reflected regionally, particularly in the Pacific Ocean and Indian Ocean SESs. These results underscore the utility of resilience-based approaches in assessing environmental change in SESs, detecting spatiotemporal variation at the global and regional scales, and facilitating more effective monitoring and management of coral reef SESs.

Differences in Cadmium Uptake and Accumulation in Seedlings of Wheat Varieties with Low- and High-Grain Cadmium Accumulation under Different Drought Stresses.

Cadmium (Cd) and drought, as abiotic stresses, have long been significant challenges for crop growth and agricultural production. However, there have been relatively few studies conducted on the effects of drought stress on Cd uptake, especially regarding the differences in Cd uptake characterization in varieties with varying Cd accumulation under different drought stress. To investigate the effects of drought conditions on Cd uptake by wheat in different genotypes under specific background levels of Cd pollution, we validated the differences in root absorption characteristics of low- (YM) and high-grain Cd accumulating wheat genotypes (XM) using non-invasive micro-test technology, and we conducted a hydroponic experiment on the Cd addition and different drought levels in a climate-controlled chamber. The biomass, root morphology, Cd uptake, and accumulation were determined under Cd (100 µmol L-1) and different drought levels of 0% (0 MPa), 5% (-0.100 Mpa), 10% (-0.200 Mpa), and 15% (-0.388 Mpa) simulated by polyethylene glycol (PEG-6000). We found that the simultaneous exposure to Cd and drought had a suppressive effect on the total root lengths, root surface areas, and root volumes of XM and YM, albeit with distinct patterns of variation. As the concentration of PEG-6000 increased, the Cd concentrations and the amount of Cd accumulated in the roots and shoots of XM and YM decreased. Specifically, the Cd concentration in the roots exhibited a reduction ranging from 12.51% to 66.90%, while the Cd concentration in the shoots experienced an even greater decrease of 50.46% to 80.57%. The PEG-6000 concentration was significantly negatively correlated (p < 0.001) with Cd concentration of roots and shoots and Cd accumulation in roots, shoots, and the whole plants and significantly negatively correlated (p < 0.05) with the total length, surface area, and volume of roots. This study confirms that drought stress (5% PEG-6000) can decrease the uptake and accumulation of Cd in wheat seedlings without significant inhibition of biomass, and the change of root morphology (root length) and the decrease of Cd concentration in roots may be the main direct pathways for achieving these effects under drought stress. This research provides a new perspective and idea for water management in Cd-contaminated farmland.

Plasticity and genetic effects contribute to different axes of neural divergence in a community of mimetic Heliconius butterflies.

Changes in ecological preference, often driven by spatial and temporal variation in resource distribution, can expose populations to environments with divergent information content. This can lead to adaptive changes in the degree to which individuals invest in sensory systems and downstream processes, to optimize behavioural performance in different contexts. At the same time, environmental conditions can produce plastic responses in nervous system development and maturation, providing an alternative route to integrating neural and ecological variation. Here, we explore how these two processes play out across a community of Heliconius butterflies. Heliconius communities exhibit multiple Mullerian mimicry rings, associated with habitat partitioning across environmental gradients. These environmental differences have previously been linked to heritable divergence in brain morphology in parapatric species pairs. They also exhibit a unique dietary adaptation, known as pollen feeding, that relies heavily on learning foraging routes, or trap-lines, between resources, which implies an important environmental influence on behavioural development. By comparing brain morphology across 133 wild-caught and insectary-reared individuals from seven Heliconius species, we find strong evidence for interspecific variation in patterns of neural investment. These largely fall into two distinct patterns of variation; first, we find consistent patterns of divergence in the size of visual brain components across both wild and insectary-reared individuals, suggesting genetically encoded divergence in the visual pathway. Second, we find interspecific differences in mushroom body size, a central component of learning and memory systems, but only among wild caught individuals. The lack of this effect in common-garden individuals suggests an extensive role for developmental plasticity in interspecific variation in the wild. Finally, we illustrate the impact of relatively small-scale spatial effects on mushroom body plasticity by performing experiments altering the cage size and structure experienced by individual H. hecale. Our data provide a comprehensive survey of community level variation in brain structure, and demonstrate that genetic effects and developmental plasticity contribute to different axes of interspecific neural variation.

Solar-induced 27-day modulation on polar mesospheric cloud (PMC), based on combined observations from SOFIE and MLS

Temperature and water vapor are two key variables affecting the polar mesospheric cloud (PMC). Solar radiation can increase the mesospheric temperature through UV heating. In this research, the composite solar index Y10 is used for the first time to study the influence of solar radiation on PMC variability. The ice water content (IWC) is selected to characterize the properties of PMCs. The observations of IWC are from the Solar Occultation For Ice Experiment (SOFIE) onboard the Aeronomy of Ice in the Mesosphere (AIM) satellite, and the temperature data used are measured by both the SOFIE instrument and Microwave Limb Sounder (MLS) onboard the Aura satellite. According to the superposed epoch analysis (SEA) method, it is shown that the solar 27-day modulation can affect PMCs by changing and modulating the mesospheric temperature. The results show that the IWC responds to the Y10 later than the mesospheric temperature does. Further investigation into the relationship between the mesospheric temperature and PMCs reveals that the average time lag is 0 days in the northern hemisphere (NH) and 1 day in the southern hemisphere (SH). The differences in temperature response to the 27-day solar rotational modulation with atmospheric pressure and latitude are also analyzed on the basis of the temperature observations made from 2004 to 2020 by the MLS. The temperature time lag of NH2008 and NH2012 are 1–5 days (depending on latitude), close to the time lag of direct solar heating with 4 days. The PMC seasons with temperature time lags greater than 5 days are indicated to be modulated by atmospheric dynamics with a 27-day cycle. The temperature time lag has two distinct patterns of variation in latitude, and thus two different atmospheric modulation mechanisms may exist. Twelve PMC seasons with 27-day periodicity are distinguished, nine of which have decreasing temperature time lags with increasing altitude because of the atmospheric dynamical effects.

Community assembly processes of soil bacteria and fungi along a chronosequence of rice paddies cultivated on saline‐sodic land

AbstractSaline‐alkali soils cover an area of more than 900 million ha and pose an acute threat to global food security. Rice cultivation is an effective method of saline‐sodic soil amelioration in the Songnen Plain in northeastern China. However, the changes in soil microbial communities that follow rice cultivation are largely unknown. In this study, soil bacterial and fungal communities were investigated using high‐throughput sequencing along a chronosequence of rice paddies cultivated in saline‐sodic soils. The results showed that soil fungi and bacteria become more diverse and abundant after rice cultivation compared with uncultivated saline‐sodic soil, in combination with the decreased pH and increased soil organic matter, indicating the amelioration of saline‐sodic soil. The processes of microbial succession following rice cultivation can be divided into two stages: shorter than and longer than 10 years. Moreover, soil fungi and bacteria exhibited distinct variation patterns as they were dominated by different influential factors. The results indicated that bacteria were more strongly dominated by soil properties than fungi, while the latter were more dependent on vegetation. As rice cultivation continued, fungi exhibited better adaptation and faster succession than bacteria in response to environmental shifts after rice cultivation. Therefore, measures that can enhance plant–microbe interactions may be a viable approach for promoting saline‐sodic soil amelioration. This study provided novel insights into the microbial assembly processes following rice cultivation on saline‐sodic lands.

Genetic variability in the E6 and E7 oncogenes of HPV52 and its prevalence in the Taizhou area, China

BackgroundHuman papillomavirus (HPV) 52 is one of the prevalent oncogenic HPV genotypes in East Asia. Chinese women have the highest susceptibility to the HPV52 type, but research data on HPV52 genetic variability and its carcinogenicity in China is lacking.MethodsThe present study aimed to investigate the genetic variability of HPV52 currently circulating among Chinese women by PCR sequencing the entire E6 and E7 oncogenes. HPV52 sequence alignment, genetic heterogeneity analyses and maximum-likelihood phylogenetic tree construction were performed by BioEdit software and MEGA X software.ResultsBetween 2016 and 2018, the overall HPV infection rate was 21.3%, of which HPV52 was the most prevalent high-risk type (17.2%) in the Taizhou area, China. A total of 339 single HPV52-positive samples were included in this study. We obtained 27 distinct variation patterns of HPV52 with the accession GenBank numbers ON529577-ON529603. Phylogenetic analysis showed that 96.6% of HPV52 variants belonged to lineage B, which seemed to be uniquely defined by G350T, A379G (K93R) in the E6 gene and C751T, A801G in the E7 gene. Due to the dominance of lineage B in our study population, the results could not be used to assess the association of the HPV52 (sub)lineage with the risk of cervical lesions. In addition, no significant trends were observed between the nucleotide substitutions of HPV52 variants and the risk of cervical carcinogenesis.ConclusionOur data showed that HPV52 variants were strongly biased towards lineage B. These results confirmed that cervical lesions in the Taizhou area are highly attributable to HPV52, which may be due to the high infection rate of lineage B in the population.

A meta-analysis on the anatomical variability of the brachial plexus: Part III – Branching of the infraclavicular part

IntroductionThe anatomy of the brachial plexus has been a subject of interest to many researchers over time resulting in an inconsistent amount of data. Previously, our team had published two evidence-based studies on the anatomical variations involving the brachial plexus, therefore the aim of this study was to analyze the findings regarding the infraclavicular part of the brachial plexus with the use of meta-analytic techniques to complete the comprehensive series. Material and methodsMajor scientific databases were extensively searched to compile anatomical studies investigating the morphology of the infraclavicular part of the brachial plexus. Extracted data were classified based on our proposed classification system and subsequently analyzed with the use of random effects meta-analysis to state the pooled prevalence estimates of the distinct variation patterns. ResultsA total of 75 studies (4772 upper limbs) were selected for the meta-analysis. The branches of the lateral cord, including the lateral pectoral nerve and musculocutaneous nerve, resembled their usual origin in 76.8% (95% CI 50–96%) and 98.8% (95% CI 98–100%), respectively. The medial pectoral nerve, medial brachial cutaneous nerves, medial antebrachial cutaneous nerve and ulnar nerve emerging from the medial cord were observed originating from their usual origins in 90.9% (95% CI 68–100%), 90.7% (95% CI 73–100%), 87.9% (95% CI 67–99%) and 97.7% (95% CI 94–100%), respectively. Lastly, nerves branching from the posterior cord, including the superior and inferior subscapular nerves, thoracodorsal nerve, axillary nerve and radial nerve, originated as per textbook description in 90.7% (95% CI 80–98%), 76.1% (95% CI 61–89%), 90.1% (95% CI 84–95%), 79.8% (95% CI 68–90%) and 99.0% (95% CI 96–100%), respectively. Moreover, the usual origin of the median nerve from the lateral and medial cord via the corresponding roots was encountered in 89.7% (95% CI 84–95%) of cases. ConclusionsThe nerves originating from the infraclavicular part of the brachial plexus exhibit a wide spectrum of possible origins. However, the usual patterns were significantly the most common types present in more than three quarters of cases. Especially clinicians might profit from the enhanced understanding of the brachial plexus anatomy presented herein, since we offer a strong guide for handling the anatomically challenging pathologies in this specific area.

Parameterizing Practice in a Longitudinal Measurement Burst Design to Dissociate Retest Effects From Developmental Change: Implications for Aging Neuroscience.

Background: In longitudinal designs, the extraneous influence of retest effects can confound and obscure estimates of developmental change. The current study provides a novel approach to independently parameterize short-term retest effects and long-term developmental change estimates by leveraging a measurement burst design and three-level multilevel modeling. We further employ these short- and long-term slopes as predictors of cognitive status at long-term follow-up assessments.Methods: Participants included 304 older adults from Project MIND: a longitudinal measurement burst study assessing cognitive performance across both biweekly sessions and annual retests. Participants were classified as either Healthy controls (HC) or Cognitively Impaired, not Demented (CIND) at baseline, the final burst assessment (Year 4), and at an additional four-year follow-up (Year 8). Response time inconsistencies (RTI) were computed at each burst occasion for a simple choice response time (CRT) task and a one-back response time (BRT) task. Three-level multilevel models were employed to simultaneously examine change in RTI for both CRT and BRT across weeks within years, as well as across years, in order to dissociate within-individual retest effects (short-term) from developmental (long-term) change slopes. Individual slopes were then extracted and utilized in a series of multinomial logistic regression equations to contrast short- vs. long-term RTI change as predictors of cognitive status.Results: Separately parameterizing short- and long-term change estimates yielded distinct patterns of variation. CRT RTI remained stable across short-term weekly assessments, while significantly increasing across years. In contrast, BRT RTI decreased significantly across short-term assessments but showed no change across long-term assessments. After dissociating change estimates, short-term BRT as well as long-term CRT and BRT estimates predicted cognitive status at long-term follow-ups; increases in RTI, suggesting either an inability to benefit from retest or process-based developmental decline, were associated with an increased likelihood of being classified as CIND.Conclusions: We showcase an innovative approach to dissociate retest effects from developmental change across and within individuals. Accurately parameterizing these distinct change estimates can both reduce systematic bias in longitudinal trend estimates as well as provide a clinically useful tool by utilizing retest effects to predict cognitive health and impairment.

Influences of Randomly Uncertain Factors on Dynamic Coefficients of an Interlocking Labyrinth Seal-Rotor System

Many randomly uncertain factors inevitably arise when gas flows through a labyrinth seal, and the orbit of the rotor center will not rotate along a steady trajectory, as previously studied. Here, random uncertainty is considered in an interlocking labyrinth seal-rotor system to investigate the fluctuations of dynamic coefficients. The bounded noise excitation is introduced into the momentum equation of the gas flow, and as a result, the orbit of the rotor center is expressed as the combination of an elliptic trajectory with the bounded noise perturbation. Simulation results of the coefficients under randomly uncertain perturbations with various strengths are comparatively investigated with the traditional predictions under ideal conditions, from which the influences of random uncertain factors on dynamic coefficients are analyzed in terms of the rotor speed, pressure difference, and inlet whirl velocity. It is shown that the deviation levels of the dynamic coefficients are directly related to the random perturbations and routinely increase with such perturbation strengths, and the coefficients themselves may exhibit distinct variation patterns against the rotor speed, pressure difference, and inlet whirl velocity.

Estimating health of the implanted cochlea using psychophysical strength-duration functions and electrode configuration

It is generally believed that the efficacy of cochlear implants is partly dependent on the condition of the stimulated neural population. Cochlear pathology is likely to affect the manner in which neurons respond to electrical stimulation, potentially resulting in differences in perception of electrical stimuli across cochlear implant recipients and across the electrode array in individual cochlear implant users. Several psychophysical and electrophysiological measures have been shown to predict cochlear health in animals and were used to assess conditions near individual stimulation sites in humans. In this study, we examined the relationship between psychophysical strength-duration functions and spiral ganglion neuron density in two groups of guinea pigs with cochlear implants who had minimally-overlapping cochlear health profiles. One group was implanted in a hearing ear (N = 10) and the other group was deafened by cochlear perfusion of neomycin, inoculated with an adeno-associated viral vector with an Ntf3-gene insert (AAV.Ntf3) and implanted (N = 14). Psychophysically measured strength-duration functions for both monopolar and tripolar electrode configurations were then compared for the two treatment groups. Results were also compared to their histological outcomes. Overall, there were considerable differences between the two treatment groups in terms of their psychophysical performance as well as the relation between their functional performance and histological data. Animals in the neomycin-deafened, neurotrophin-treated, and implanted group (NNI) exhibited steeper strength-duration function slopes; slopes were positively correlated with SGN density (steeper slopes in animals that had higher SGN densities). In comparison, the implanted hearing (IH) group had shallower slopes and there was no relation between slopes and spiral ganglion density. Across all animals, slopes were negatively correlated with ensemble spontaneous activity levels (shallower slopes with higher ensemble spontaneous activity levels). We hypothesize that differences in strength-duration function slopes between the two treatment groups were related to the condition of the inner hair cells, which generate spontaneous activity that could affect the across-fiber synchrony and/or the size of the population of neural elements responding to electrical stimulation. In addition, it is likely that spiral ganglion neuron peripheral processes were present in the IH group, which could affect membrane properties of the stimulated neurons. Results suggest that the two treatment groups exhibited distinct patterns of variation in conditions near the stimulating electrodes that altered detection thresholds. Overall, the results of this study suggest a complex relationship between psychophysical detection thresholds for cochlear implant stimulation and nerve survival in the implanted cochlea. This relationship seems to depend on the characteristics of the electrical stimulus, the electrode configuration, and other biological features of the implanted cochlea such as the condition of the inner hair cells and the peripheral processes.

Understanding Informed Design through Trade-Off Decisions With an Empirically-Based Protocol for Students and Design Educators

Trade-off decisions, which necessitate striking a balance between two or more desirable but competing features, are a crucial part of design practice. However, they are known to be difficult for student designers to make. While designers, educators, and researchers have numerous methods to assess the quality of design artifacts, these methods are not necessarily easy to use, nor do they indicate design competency. Moreover, they are not grounded in a definition of engineering design. The objectives of this study were twofold. First, we developed a protocol to depict design artifact quality through the lens of design trade-off decisions. We aimed to produce a protocol that:(1) encompasses multiple complementary and competing dimensions, (2) can be applied consistently and systematically, and (3) indicates design competency. We conceptualized a quantitative representation of the degree to which a design artifact addresses human, technical, and economic requirements called the Trade-off Value Protocol. Second, we tested the Trade-off Value Protocol by applying it to 398 middle school students’ design artifacts of energy-efficient homes. We used an etic approach of thematic analysis to identify the patterns of variation therein. We found five distinct patterns of variation in the set of student design artifacts, which suggested certain trends in the way that students address design dimensions and demonstrate varying levels of design competency. The Trade-off Value Protocol isolates an important feature of design competency with which beginning designers often struggle and could be a tool for educators to help students become more informed designers.

Association of cervical carcinogenesis risk with HPV16 E6 and E7 variants in the Taizhou area, China

BackgroundHuman papillomavirus (HPV) type 16 accounts for a larger share of cervical cancer and has been a major health problem worldwide for decades. The progression of initial infection to cervical cancer has been linked to viral sequence properties; however, the role of HPV16 variants in the risk of cervical carcinogenesis, especially with longitudinal follow-up, is not fully understood in China.MethodsWe aimed to investigate the genetic variability of HPV16 E6 and E7 oncogenes in isolates from cervical exfoliated cells. Between December 2012 and December 2014, a total of 310 single HPV16-positive samples were selected from women living in the Taizhou area, China. Sequences of all E6 and E7 oncogenes were analysed by PCR-sequencing assay. Detailed sequence comparison, genetic heterogeneity analyses and maximum-likelihood phylogenetic tree construction were performed with BioEdit Sequence Alignment Editor and MEGA X software. Data for cytology tests and histological diagnoses were obtained from our Taizhou Area Study with longitudinal follow-up for at least 5 years. The relationship between HPV16 variants and cervical carcinogenesis risk was analysed by the chi-square test or Fisher’s exact test.ResultsIn this study, we obtained 64 distinct variation patterns with the accession GenBank numbers MT681266-MT681329. Phylogenetic analysis revealed that 98.3% of HPV16 variants belong to lineage A, in which the A4 (Asian) sublineage was dominant (64.8%), followed by A2 (12.1%), A1 (11.4%), and A3 (10.0%). The A4 (Asian) sublineage had a higher risk of CIN2+ than the A1–3 (European) sublineages (OR = 2.69, 95% CI = 1.04–6.97, P < 0.05). Furthermore, nucleotide variation in HPV16 E6 T178G is associated with the development of cervical cancer.ConclusionThese data could provide novel insights into the role of HPV16 variants in cervical carcinogenesis risk in China.

Phenotypic diploidization in plant functional traits uncovered by synthetic neopolyploids in Dianthus broteri.

Whole-genome duplication and post-polyploidization genome downsizing play key roles in the evolution of land plants; however, the impact of genomic diploidization on functional traits still remains poorly understood. Using Dianthus broteri as a model, we compared the ecophysiological behaviour of colchicine-induced neotetraploids (4xNeo) to diploids (2x) and naturally occurring tetraploids (4xNat). Leaf gas-exchange and chlorophyll fluorescence analyses were performed in order to asses to what extent post-polyploidization evolutionary processes have affected 4xNat. Genomic diploidization and phenotypic novelty were evident. Distinct patterns of variation revealed that post-polyploidization processes altered the phenotypic shifts directly mediated by genome doubling. The photosynthetic phenotype was affected in several ways but the main effect was phenotypic diploidization (i.e. 2x and 4xNat were closer to each other than to 4xNeo). Overall, our results show the potential benefits of considering experimentally synthetized versus naturally established polyploids when exploring the role of polyploidization in promoting functional divergence.

Molecular characterization of porcine epidemic diarrhea virus associated with outbreaks in southwest China during 2014-2018.

Porcine epidemic diarrhea virus (PEDV), which re-emerged in China since 2010, has swept across the whole country leading to tremendous economic losses. In this study, a total of 645 diarrhea samples collected from 156 pig farms in Sichuan and Guizhou province during 2014-2018 were tested for PEDV. We found that samples from 47.66% (84/156) of the farms were positive for PEDV with an overall detection rate of 35.81% (231/645). Fifty-two strains were selected for full-length S gene analyses, and these strains were classified into three subgroups, an S-INDEL subgroup (G1c), and two non-S-INDEL subgroups (G2b, AJ1102-like and G2c), accounting for 15.38% (8/52), 23.08% (12/52) and 59.62% (31/52) of the total analysed strains, respectively. We found these three subgroups of PEDV coexisted in Sichuan province, and the S-INDEL strain was detected in Guizhou. Further antigenic variation analysis of the neutralizing epitopes (S10, COE, SS2, SS6 and 2C10) on the spike protein revealed that the S-INDEL and non-S-INDEL strains shared similar variation features in COE and SS6, but exhibited distinct variation patterns in the S10 domain. Unique variation patterns on N-glycosylation sites in the S protein were also observed for the S-INDEL and non-S-INDEL strains. Moreover, nine strains (three from each subgroup) were subjected to full-genome characterization. Complete genome phylogeny showed an inconsistent tree topology for genotyping, with two G2c strains grouped into the GII-b (AH2012-like) genogroup and the remaining seven strains including three S-INDEL strains grouped into the GII-c genogroup. Further recombination analyses indicated that six of the GII-c strains probably originated from intra-genogroup recombinations. Notably, three newly emerged S-INDEL strains with novel recombination patterns were first identified. Together, our data revealed a new status of PEDV in southwest China, which can increase understanding of the prevalence, genetic characteristics and evolutionary profiles of circulating PEDV strains in China.

Extrusion kinematics of UHP terrane in a collisional orogen: EBSD and microstructure-based approach from the Tso Morari Crystallines (Ladakh Himalaya)

Several extrusion mechanisms have been proposed to explain the occurrences of ultra-high pressure (UHP) rocks at collisional margins. Here we assess the suitability of the channel flow model of extrusion for the Tso Morari Crystallines (TMC) by investigating the syn-extrusion deformation kinematics of the UHP eclogite-bearing gneiss that dominates the TMC. Samples collected from the two transects viz. Sumdo-Karzok and Sumdo-Debring, have been examined. The channel flow model predicts high simple shear component at the channel margins during extrusion. Gneisses near the upper margin of the subduction channel – also the northern margin of the TMC on map – support this claim and exhibit closely spaced shear planes, and elevated fluid activity as revealed by X-ray diffraction results. Quartz grain parameters e.g. Feret diameter, aspect ratio, and vector mean strength measured from oriented thin-sections of the gneiss do not exhibit distinct pattern of variation of deformation intensity across the TMC. EBSD-based low-angle intragranular 'neighbor to neighbor' misorientation analysis and micro-textural evidences of incipient partial melting in the gneiss reflect temperatures >600 °C. We propose that return flow and buoyancy of the subducted continental crust triggered the extrusion, which was then facilitated by the Indo-Eurasia collision. The mechanism could thus be a combination of both channel flow and ductile wedge extrusion. Continued convergence possibly promoted non-planar triclinic transpression – also evident from the crystallographic vorticity axis (CVA) analysis – such that the extrusion direction varied spatially, producing the diverse shear senses observed at both meso- and micro-scales.

Developmental patterns of tobacco product and cannabis use initiation in high school.

To identify prototypical developmental patterns of tobacco product and cannabis use and co-use initiation during adolescence, and determine risk factors for and consequences of these initiation patterns. Prospective repeated-measures cohort with eight semi-annual assessments during high school. Multiple-event process survival mixture modeling identified latent initiation classes with distinct patterns of variation in timing of use initiation of tobacco products and cannabis. We then estimated: (1) associations of baseline risk factors with membership in initiation classes and (2) differences between initiation classes in frequency of cannabis and tobacco product use at the final assessment. Ten high schools in the Los Angeles, CA, USA metropolitan area, 2013-17. Students [1031 (45.4%) males; mean (standard deviation) age at baseline=14.6 (0.39) years] who had never used any tobacco products or cannabis at baseline 9th grade assessment (n=2272). Self-report measures of electronic cigarette (e-cigarette), combustible cigarette, hookah, cigar/cigarillos and cannabis use were collected at each assessment. Four distinct tobacco and cannabis use initiation classes were identified: (1) early and high-risk cannabis and polytobacco initiators (n=116; 5.1%); (2) early cannabis and polytobacco initiators (n=172; 7.6%); (3) late cannabis and e-cigarette initiators (n=431; 19.0%); and (4) abstainers (n=1553; 68.4%). At baseline, older age for the early and high-risk cannabis and polytobacco initiators [odds ratio (OR)=1.22, 95% confidence interval (CI)=1.10, 1.35, P<0.001], peer cannabis use (OR=1.60, 95% CI=1.23, 2.08, P<0.001) and delinquent behavior (OR=1.30, 95% CI=1.08, 1.55, P=0.004) were associated with membership in the three initiation classes (versus abstainers). Membership in the early and high-risk cannabis and polytobacco initiators class (versus three other classes) was significantly associated with increased past 30-day frequency and daily intensity of use at the final assessment (P-values <0.001). Older age, peer cannabis use and delinquent behavior appear to be risk factors for the initiation of tobacco/cannabis product use among high school students in the Los Angeles metropolitan region. Early and higher-risk polyproduct use initiation appears to be associated with greater escalation of past 30-day and daily tobacco and cannabis use at the end of the high school.

Competence to Teach a Point of Intersection for Swedish Preschool Quality

This article aims to highlight preschool teachers’ teaching competence as one critical aspect of Swedish preschool quality. The study was based on quality evaluations using the Early Childhood Environment Rating Scale. Data was collected from 153 preschools and analysed with descriptive statistics for the subscales. The standpoint of the article is that children learn and develop by communicating and interacting with their environment, highlighting how intentions and circumstances between and within systems and contexts affect preschool teaching and conditions for children’s learning. To evaluate high-quality preschool education, two subscales with the lowest quality scores, Language and literacy and Learning activities, were chosen to explore teaching, as they embrace items and criteria that depend on teaching. The results highlight distinct patterns of variation in quality. The competence to teach is a point of intersection for the quality in preschool, and conditions for children’s learning. Areas in need of competence development are subject, and didactic knowledge competence in relating to children in dialogue, child-focused strategies, clarifying and communicating an object of knowledge by integrating play, care, and learning in teaching.

Ophelimus migdanorum Molina-Mercader sp. nov. (Hymenoptera: Eulophidae): Application of Integrative Taxonomy for Disentangling a Polyphenism Case in Eucalyptus globulus Labill Forest in Chile

In 2003, a new gall-inducing wasp of the genus Ophelimus was detected in the Valparaíso Region (Chile), affecting tree plantations of Eucalyptus globulus Labill and Eucalyptus camaldulensis Dehnh. Since then Ophelimus has been frequently detected in different plantations in Chile, covering a widespread area. A preliminary collaborative study suggests that the micro-wasp detected should be classified as a new Ophelimus species. In this paper, using an integrative approach (including genetic, morphological, and behavioral data), we addressed the delimitation and description of this new species. This study involved the use of brood adult specimens, raised at the laboratory of MIPlagas Ltda., from infested twigs of E. globulus collected in several localities between of Valparaíso and Los Lagos Regions (Chile). Morphological structures were described according to current Eulophidae taxonomic keys, as well as additional traits, such as gall morphology and behavior. Genetic characterization was implemented using a phylogenetic approach, based on a 648 bp specific fragment of the mitochondrial Cytochrome Oxidase I gene (COI 5 region) obtained from collected specimens and available databases (Genbank, NCBI, and BOLDSystem). Specifically, distinctive patterns of variation were detected in traits like gall and antennae morphology, growth habit trends, and a notorious polyphenism in the setae from the sub marginal vein. Overall evidence suggests that this new entity should be considered a new species in Ophelimus, which is henceforth named Ophelimus migdanorum Molina-Mercader.

Phenotypic and genetic diversity in aposematic Malagasy poison frogs (genus Mantella).

Intraspecific color variation has long fascinated evolutionary biologists. In species with bright warning coloration, phenotypic diversity is particularly compelling because many factors, including natural and sexual selection, contribute to intraspecific variation. To better understand the causes of dramatic phenotypic variation in Malagasy poison frogs, we quantified genetic structure and color and pattern variation across three closely related species, Mantella aurantiaca, Mantella crocea, and Mantella milotympanum. Although our restriction site‐associated DNA (RAD) sequencing approach identified clear genetic clusters, they do not align with current species designations, which has important conservation implications for these imperiled frogs. Moreover, our results suggest that levels of intraspecific color variation within this group have been overestimated, while species diversity has been underestimated. Within major genetic clusters, we observed distinct patterns of variation including: populations that are phenotypically similar yet genetically distinct, populations where phenotypic and genetic breaks coincide, and populations that are genetically similar but have high levels of within‐population phenotypic variation. We also detected admixture between two of the major genetic clusters. Our study suggests that several mechanisms—including hybridization, selection, and drift—are contributing to phenotypic diversity. Ultimately, our work underscores the need for a reevaluation of how polymorphic and polytypic populations and species are classified, especially in aposematic organisms.