Discrimination Of Isomers Research Articles

Zinc-Ion-Induced Aggregation of Gold Clusters for Visible-Light-Excitation-Based Fluorimetric Discrimination of Geometrical Isomers.

Herein, we report discrimination of dicarboxylic acids - fumaric acid (FA) and maleic acid (MA) - exhibiting geometrical isomerism, using nanoclusters based luminescent probe having excitation under broad day light. The luminescent probe was designed via complexation reaction between zinc ions and ligands (mercaptopropioinc acid; MPA) stabilizing the gold nanoclusters. This resulted in formation of nanoaggregates exhibiting bright green luminescence upon excitation at 450 nm capable of discriminating between FA and MA upto nanomolar level. The basis of discrimination has been attributed to deprotonation of FA and MA following interaction with MPA moieties present on the surface of the nanoaggregates and being governed by the stability of the respective conjugate base of the geometrical isomers of the dicarboxylic acids. As a consequence of different extent of deprotonation of FA and MA upon interaction with the cluster aggregates, different effect on the luminescence of the aggregates was observed, thus enabling discernible fluorimetric discrimination between FA and MA under visible light excitation.

Development of a photoinduced fragmentation ion trap for infrared multiple photon dissociation spectroscopy.

Methods for isomer discrimination by mass spectroscopy are of increasing interest. Here we describe the development of a three-dimensional ion trap for infrared multiple photon dissociation (IRMPD) spectroscopy that enables the acquisition of the infrared spectrum of selected ions in the gas phase. This system is suitable for the study of a myriad of chemical systems, including isomer mixtures. A modified three-dimensional ion trap was coupled to a CO2 laser and an optical parametric oscillator/optical parametric amplifier (OPO/OPA) system operating in the range 2300 to 4000 cm-1 . Density functional theory vibrational frequency calculations were carried out to support spectral assignments. Detailed descriptions of the interface between the laser and the mass spectrometer, the hardware to control the laser systems, the automated system for IRMPD spectrum acquisition and data management are presented. The optimization of the crystal position of the OPO/OPA system to maximize the spectroscopic response under low-power laser radiation is also discussed. OPO/OPA and CO2 laser-assisted dissociation of gas-phase ions was successfully achieved. The system was validated by acquiring the IRMPD spectra of model species and comparing with literature data. Two isomeric alkaloids of high economic importance were characterized to demonstrate the potential of this technique, which is now available as an open IRMPD spectroscopy facility in Brazil.

Improved Method Supporting Maldi-Ms Analysis of Sialyloligosaccharides Including Their Structural Isomers

Structural and functional analyses of glycans in glycoconjugates have become an essential study for understanding various biological events. Mass spectrometry (MS) has been developed as one of the main analytical methods in glycan study. However, the analysis of isomers of glycans has been an important subject accompanying on the MS analysis. We reported a fluorescent labeling of carboxy group of sialic acid by amidation with 2-(2-pyridylamino) ethylamine (PAEA). The method suppressed the dissociation of sialic acid in MALDI-MS (Matrix Assisted Laser Desorption/Ionization-Mass Spectrometry) and enabled both stable MALDI-MS analysis and high sensitive chromatographic analysis of sialyloligosaccharides and gangliosides. TLC (Thin Layer Chromatography) and HPLC (High Performance Liquid Chromatography) analyses provided important informations on glycosidic linkages of sialic acids that could not be obtained by MS analysis alone. High sensitive detection of the chromatographic separation improved the discrimination and the purification of each component of the isomers. In this study, the PAEA-amidation of sialyloligosaccharide was checked by TLC. The reaction mixture developed on a TLC plate was transferred to PVDF (polyvinylidene difluoride) membrane and the spot corresponding to the PAEA-sialyloligosaccharide was cut off. The content was extracted and then submitted to MALDI-TOF-MS analysis after one step treatment using a reversed-phase cartridge, resulted in providing the reliable mass spectrum. As described above, our improvement simplified the process from the detection on chromatography to the purification of PAEA-sialyloligosaccharides for MALDI-MS analysis and enabled detailed sialyloligosaccharide structural analysis including the discrimination of isomers.

Feature-Based Molecular Networking for Metabolite Annotation.

The Global Natural Product Social Molecular Networking (GNPS) platform leverages tandem mass spectrometry (MS/MS) data for annotation of compounds. Molecular networks aid in the visualization of the chemical space within a metabolomics experiment. Recently, molecular networking has been combined with feature detection methods to yield Feature-Based Molecular Networking (FBMN). FBMN allows for the discrimination of isomers within the molecular network, incorporation of quantitative information generated by the feature detection tools into visualization of the molecular network, and compatibility with forthcoming in silico annotation tools. This chapter provides step-by-step methods for generating a molecular network to annotate microbial natural products using the Global Natural Product Social Molecular Networking (GNPS) Feature-Based Molecular Networking (FBMN) workflow.

Analysis of 1- and 3-Phosphohistidine (pHis) Protein Modification Using Model Enzymes Expressed in Bacteria.

Despite the discovery of protein histidine (His) phosphorylation nearly six decades ago, difficulties in measuring and quantifying this unstable post-translational modification (PTM) have limited its mechanistic analysis in prokaryotic and eukaryotic signaling. Here, we describe reliable procedures for affinity purification, cofactor-binding analysis and antibody-based detection of phosphohistidine (pHis), on the putative human His kinases NME1 (NDPK-A) and NME2 (NDPK-B) and the glycolytic phosphoglycerate mutase PGAM1. By exploiting isomer-specific monoclonal N1-pHis and N3-pHis antibodies, we describe robust protocols for immunological detection and isomer discrimination of site-specific pHis, including N3-pHis on His 11 of PGAM1.

Profiling and isomer recognition of phenylethanoid glycosides from Magnolia officinalis based on diagnostic/holistic fragment ions analysis coupled with chemometrics

Isomers derived from natural products are promising candidates for drug discovery. However, characterization of isomers by mass spectrometry, especially stereoisomers and positional isomers, remains a large challenge due to insufficient reference standards and isomers’ highly similar fragmentation pathways or nondistinctive ion abundances. Herein, this report presents the first proposal of a method, combining multiple diagnostic ion/neutral loss (DINL) postanalysis and especially untargeted fingerprint analysis of all fragment ions (FAAFI) by means of a home-made program and chemometrics, to profile chemical components and recognize their isomers derived from medicinal plants. As a proof-of-concept, the chemical profiling of phenylethanoid glycosides (PhGs) and their isomers, which showed remarkable neuroprotective, anti-inflammatory and immunomodulatory effects, was performed. Using DINL to extract PhGs and FAAFI to distinguish their stereoisomers and positional isomers, as many as 87 PhGs, including 14 isomers, were tentatively identified from Magnolia officinalis; in addition, 17 PhGs were unambiguously identified by comparing the retention time and MS/MS data with those of reference compounds. Under the theory of Big Data analysis, the untargeted fingerprint analysis concerning unbiased ions was sufficient to contribute to discrimination of isomers even without evident distinction occurred for main ions.

Untangling the Formation of Methoxymethanol (CH3OCH2OH) and Dimethyl Peroxide (CH3OOCH3) in Star-forming Regions

Abstract Methoxymethanol (CH3OCH2OH) was recently detected toward the MM1 core in the high-mass star-forming region NGC 6334I. However, the underlying formation mechanisms of this complex organic molecule (COM) as well as its structural isomers ethylene glycol (HOCH2CH2OH) and the hitherto unobserved dimethyl peroxide (CH3OOCH3) are still elusive. Here, we report the very first confirmed synthesis of dimethyl peroxide—at various deuteration levels within interstellar analogous ices of D3-methanol (CD3OH) exposed to ionizing radiation at ultralow temperatures of 5 K. The discrimination of specific isomers is achieved by exploiting reflectron time-of-flight mass spectrometry coupled with isomer-selective photoionization of the subliming molecules in the temperature programmed desorption phase of the experiment. Based on the distribution of the identified species at distinct mass-to-charge ratios, we reveal primary and secondary reaction pathways to methoxymethanol, ethylene glycol, and dimethyl peroxide involving radical–radical recombination of methoxy (CH3O) and hydroxymethyl (CH2OH). Our findings help to constrain the formation mechanism of COMs detected within star-forming regions (methoxymethanol, ethylene glycol) and propose that the hitherto elusive dimethyl peroxide isomer represents an excellent candidate for future astronomical searches.

Introduction of a Fixed-Charge, Photolabile Derivative for Enhanced Structural Elucidation of Fatty Acids.

Fatty acids are a structurally diverse category of lipids with a myriad of biochemical functions, which includes their role as building blocks of more complex lipids (e.g., glycerophospholipids and triacylglycerols). Increasingly, the analysis of fatty acids is undertaken using liquid chromatography-mass spectrometry (LC-MS), due to its versatility in the detection of lipids across a wide range of concentrations and diversity of molecular structures and masses. Previous work has shown that fixed-charge pyridinium derivatives are effective in enhancing the detection of fatty acids in LC-MS workflows. Herein, we describe the development of two novel pyridinium fixed-charged derivatization reagents that incorporate a photolabile aryl iodide that is selectively activated by laser irradiation inside the mass spectrometer. Photodissociation mass spectra of fatty acids conjugated to 1-(3-(aminomethyl)-4-iodophenyl)pyridin-1-ium (4-I-AMPP+) and 1-(4-(aminomethyl)-3-iodophenyl)pyridin-1-ium (3-I-AMPP+) derivatives reveal structurally diagnostic product ions. These spectra feature radical-directed dissociation of the carbon-carbon bonds within the fatty acyl chain, enabling structural assignments of fatty acids and discrimination of isomers that differ in site(s) of unsaturation, methyl branching or cyclopropanation. These derivatives are shown to be suitable for hyphenated LC-MS methods, and their predictable photodissociation behavior allows de novo identification of unusual fatty acids within a biological context.

Chemical profiling for bile acid derivatives in yak bile

Bile acids( BAs),the major constituents of bile,are also known to be potential biomarkers of various diseases,especially liver disease. The systematic analysis of BAs is believed to be of great importance towards the clarification of the effective material basis for bile-type medicines,and the diagnosis and therapy of related diseases as well. As a part of systematic study on bile-type medicine ongoing in our group,this study lays emphasis on the isomer discrimination,and the improvement of analytical method of BAs. Further,this method was subsequently applied to elucidate in depth the chemical profile of BAs in yak bile. Regarding isomer discrimination for BAs,we constructed relative response-collision energy curves( RRCECs) by high performance liquid chromatographyion trap-time of flight-mass spectrometry( HPLC-IT-TOF-MS) in combination with high performance liquid chromatography-triple quadrupole-linear ion trap mass spectrometry( HPLC-Qtrap-MS). As a result,both the optimum collision energy( OCE) and CE_(50) exhibited great correlations with structural characteristics,thus enabling the isomer distinguishing,such as unconjugated BAs,glycine-conjugated BAs,and taurine-conjugated BAs. According to information provided by mass spectrometry,the comparison of OCE and CE_(50),retention time matching,combined with reference substances and database retrieval,a total of 30 bile acid derivatives were observed and identified in yak bile. The newly developed method could serve as a feasible tool for the in-depth characterization of BAs in bile and biological samples.

Synthetic Small Molecule Characterization and Isomer Discrimination Using Gas-Phase Hydrogen–Deuterium Exchange IMS-MS

Ion mobility spectrometry-mass spectrometry (IMS-MS) combined with gas-phase hydrogen-deuterium exchange has been used to characterize novel psychoactive substances (NPSs) which are small synthetic compounds designed to mimic the effects of other illicit substances. Here, NPSs containing labile heteroatom hydrogens were evaluated for HDX reactivity in the presence of either deuterated water (D2O) or ammonia (ND3) within the drift tube. An initial evaluation of exchange propensity was performed for six NPSs. Five compounds exchanged in the presence of ND3 while only one NPS (benzyl piperazine) exchanged with D2O. The exchange mechanism of D2O requires stabilization with a nearby charged site; the diamine ring of benzyl piperazine provided this charge site at a fixed length. Three disubstituted benzene isomers ( o-, m-, and p-fluorophenyl piperazine) containing the diamine ring structure and a fluorine atom were subsequently analyzed. Having identical isotopic composition and nearly identical drift time distributions, these isomers could not be distinguished by IMS-MS alone. However, upon undergoing HDX in the drift tube, a t test of means (α = 0.05) showed that discrimination was possible if the exchange data from both reagent gases were included. Molecular dynamics simulations show that the proximity of the fluorine to the diamine ring hinders the dihedral angle rotation between the benzene and the diamine ring; this may partially account for the observed exchange differences.

Hydrothermal synthesis of nitrogen and copper co-doped carbon dots with intrinsic peroxidase-like activity for colorimetric discrimination of phenylenediamine isomers.

Carbon dots doped with nitrogen and copper have been synthesized via a hydrothermal method. They possess favorable peroxidase-like catalytic activity over a wide range of pH values and temperatures. Specifically, they were used to catalyze the oxidation of ortho- and para-phenylenediamine (OPD and PPD) by H2O2. The resulting products possess different colors (yellow for OPD and brown for PPD), which can be visually discriminated. The corresponding typical absorption peaks of oxidized products for OPD and PPD are at 413nm and 500nm, respectively. The method displays excellent discrimination ability and selectivity over potential interferents. The detection limits are 1.1 μM for OPD and 1.9μM for PPD. The respective linear ranges are from 5 to 200μM for OPD and from 2.5to 700μM for PPD. The method was applied to the quantification of OPD and PPD in spiked natural waters. Graphical abstract Schematic presentation of the synthesis of nitrogen and copper co-doped carbon dots (N,Cu-CDs) and their application as anenzyme mimic for colorimetric discrimination of ortho-, meta- and para-phenylenediamine (OPD, MPD and PPD).

Multi-capillary column high-pressure photoionization time-of-flight mass spectrometry and its application for online rapid analysis of flavor compounds

High-pressure photoionization time-of-flight mass spectrometry (HPPI-TOFMS) is a versatile and highly sensitive analytical technique for online and real-time analysis of trace volatile organic compounds in complex mixtures. However, discrimination of isomers is usually a great challenge for the soft ionization method, and matrix effect is also inevitable under high pressure in the HPPI source. In this work, we describe a first attempt to develop a two-dimensional (2D) hyphenated instrument by coupling of a multi-capillary column (MCC) with a HPPI-TOFMS to overcome these problems. The capability of the MCC-HPPI-TOFMS for discrimination of isomeric compounds and elimination of the matrix effect was demonstrated by analyzing flavor mixtures. With the merits of fast separation, soft ionization and high detection sensitivity, satisfactory effects in the 2D analysis were achieved, despite the relatively low chromatographic resolution of MCC. As a result, three isomers, eucalyptol, l-menthone and linalool, in a flavor mixture were successfully categorized within 90 s, and the matrix effect caused by solvent ethanol was significantly eliminated as well. The limits of detection (LODs) down to sub-ppbv level were achieved for the investigated five flavor compounds without any enrichment process, and an excellent repeatability was obtained with the relative standard deviations (RSDs) of signal intensities ≤5%. The MCC-HPPI-TOFMS system was preliminarily applied for rapid and online analysis of flavor compounds in the exhaled gas of a volunteer after mouth rinsing with a gargle product. The rapid changes of the three flavor compounds, as well as the steady endogenous metabolite acetone, in the exhaled gas were successfully determined with a time-resolution of only 1.5 min.

Distinguishing the glycan isomers 2,3-sialyllactose and 2,6-sialyllactose by voltammetry after modification with osmium(VI) complexes

Altered glycosylation is a universal feature of cancer cells and certain glycans are well-known markers of tumor progression. In this work we studied two glycan isomers, 2,3-sialyllactose (3-SL) and 2,6-sialyllactose (6-SL), frequently appearing in glycoproteins connected with cancer. A combination of square wave voltammetry and glycan modification with osmium(VI) N,N,N′,N′-tetramethylethylenediamine (Os(VI)tem) allowed to distinguish between these regioisomers, since the 6-SL molecule can bind three Os(VI), while the 3-SL only two Os(VI) moieties, as experiments using capillary electrophoresis, inductively coupled plasma mass spectrometry and thin layer chromatography showed. A similar pattern of Os(VI)-modification was found for isomers of sialyl-N-acetyllactosamine and sialylgalactose. Covalent adducts of Os(VI)tem with glycans yielded three reduction voltammetric peaks. The ratio of peak I/peak II heights depends on the content of individual regioisomer in the sample. Our proposed approach allows the determination of isomer percentage representation in the mixture after one voltammogram recording. These results show a new appropriate method for the discrimination of glycan isomers containing terminal sialic acid important for distinguishing between cancerous and non-cancerous origin of biomarkers.

In-depth structural characterization of phospholipids by pairing solution photochemical reaction with charge inversion ion/ion chemistry.

Shotgun lipid analysis based on electrospray ionization-tandem mass spectrometry (ESI-MS/MS) is increasingly used in lipidomic studies. One challenge for the shotgun approach is the discrimination of lipid isomers and isobars. Gas-phase charge inversion via ion/ion reactions has been used as an effective method to identify multiple isomeric/isobaric components in a single MS peak by exploiting the distinctive functionality of different lipid classes. In doing so, fatty acyl chain information can be obtained without recourse to condensed-phase separations or derivatization. This method alone, however, cannot provide carbon-carbon double bond (C=C) location information from fatty acyl chains. Herein, we provide an enhanced method pairing photochemical derivatization of C=C via the Paternò-Büchi reaction with charge inversion ion/ion tandem mass spectrometry. This method was able to provide gas-phase separation of phosphatidylcholines and phosphatidylethanolamines, the fatty acyl compositions, and the C=C location within each fatty acyl chain. We have successfully applied this method to bovine liver lipid extracts and identified 40 molecular species of glycerophospholipids with detailed structural information including head group, fatty acyl composition, and C=C location. Graphical Abstract ᅟ.

Carbon dot-decorated porous organic cage as fluorescent sensor for rapid discrimination of nitrophenol isomers and chiral alcohols

Isomers discrimination plays a vital role in modern chemistry, and development of efficient and rapid method to achieve this aim has attracted a great deal of interest. In this work, a novel carbon dot-decorated chiral porous organic cage hybrid nanocomposite (CD@RCC3) was prepared and used to fabricate fluorescent sensor. The resultant CD@RCC3 was characterized by using a range of techniques, finding that CD@RCC3 possesses strong and stable fluorescent property in common organic solvents, especially it exhibits chiral property. The potential application of CD@RCC3 in fluorescence sensing was demonstrated by isomers discrimination. The designed sensor was successfully used to rapid discriminate nitrophenol isomers. Meanwhile, it exhibited differentiation ability towards phenylalaninol and phenylethanol enantiomers. Our work enriches the type of synthetic materials for fluorescence sensing, and provides a simple method for distinguishing structural isomers and chiral isomers.

Fluorescent Gold Nanocluster-Based Sensor Array for Nitrophenol Isomer Discrimination via an Integration of Host–Guest Interaction and Inner Filter Effect

The rapid discrimination of nitrophenol isomers has been a long-standing challenge because of the tiny structural differences among the isomers. In this study, a fluorescent sensor array based on three different-color emitting gold nanoclusters (Au NCs) that were functionalized with three different ligands and a cocapping ligand β-cyclodextrin (β-CD) has been constructed for the facile discrimination of three nitrophenol isomers via the linear discriminant analysis of isomer-induced fluorescence quenching patterns. The fluorescence quenching occurs in two steps: first, β-CDs adsorb nitrophenol isomers onto the surface of Au NCs via a host-guest interaction; second, each nitrophenol isomer quenches the fluorescence of a specific type of Au NCs through diverse inner filter effect. The different binding affinities between β-CD and each nitrophenol isomer, as well as the distinct quenching efficiencies of the isomers on the fluorescence of each Au NCs, enable an excellent discrimination of the three isomers at a concentration of 5 μM, when linear discriminant and hierarchical cluster analyses were smartly combined. In addition, even a mixture of two isomers could be distinguished with the proposed sensor array. The practicability of this developed sensor array is validated by a high accuracy (98.0%) examination of 51 unknown samples containing a single isomer or a mixture of two isomers.

Noncovalent Complexation of Saccharides with Ions and Isomer Discrimination for Saccharides

Noncovalent Complexation of Saccharides with Ions and Isomer Discrimination for Saccharides

Oriented-External Electric Fields Create Absolute Enantioselectivity in Diels-Alder Reactions: Importance of the Molecular Dipole Moment.

The manuscript studies the enantioselectivity and stereoselectivity of Diels-Alder (DA) cycloadditions between cyclopentadiene (CPD) and a variety of dienophiles (ranging from halo-ethenes to cyano-ethenes), under oriented external electric fields (OEEFs). Applying OEEFs oriented in the X/ Y directions, perpendicular to the reaction axis ( Z), will achieve complete isomeric and enantiomeric discrimination of the products. Unlike the Z-OEEF, which involves charge-transfer from the diene to the dienophile, and thereby brings about catalysis due to increased intramolecular bonding, an OEEF along X, aligned parallel to the C1-C4 atoms of CPD, will lead to R/ S enantiomeric discrimination by means of intramolecular-bond polarization. A Y field will discriminate endo/exo stereoisomers in a similar mechanism. The XY field-combination will resolve both R/S and endo/exo. The resolution is complete and can be achieved at will by flipping the direction of the field along the X and Y axes. The preconditions for achieving the enantiomeric and isomeric discrimination are discussed and require fixing of the CPD onto a surface. In so doing the chiral discrimination is achieved by dipole-moment selection rules, such that the field filters out one of the enantiomers, which is highly raised in energy by dipole selection. The dependence of the discrimination on the polarity of the dienophiles leads to a predictive trend.

Discrimination of isobaric and isomeric lipids in complex mixtures by combining ultra-high pressure liquid chromatography with collision and ozone-induced dissociation

The inability of current mass spectrometry techniques to differentiate phospholipid isomers results in a routine under-estimation of phospholipid molecular diversity in complex biological matrices. Recent technological advances in tandem mass spectrometry and ion activation are helping to overcome these limitations, but all rely on tandem mass spectrometry with unit mass-selection and suffer from co-isolation of isobaric or isomeric species. Accordingly, separation of phospholipid isomers and isobars prior to characterization is required to fully delve into the complexity of the lipidome. Here we present a novel two-stage workflow combining reversed-phase ultra-high performance liquid chromatography with ozone-induced dissociation (OzID) and combined-collision- and ozone-induced-dissociation (COzID) that reduces spectral complexity and enables discrimination of lipid isomers and isobars. Application of this technique to the analysis of human red blood cell lipid extracts allowed the separation, or partial separation, of adduct ion and head group isobars as well as double bond and sn-positional isomers affording near complete structural characterization of low abundance lipids, e.g. PC 18:0/20:3(n-6), PS 18:0/20:4(n-6) and PS 20:4(n-6)/18:0 all observed at m/z 834.7. We also introduce a software plug-in that automatically annotates OzID mass spectra to assign the carbon–carbon double bond positions in lipids. This new workflow allows us to delve deeper into the lipidome and represents another valuable tool for the lipidomics toolbox.

Large-Scale Differentiation and Site Specific Discrimination of Hydroxyproline Isomers by Electron Transfer/Higher-Energy Collision Dissociation (EThcD) Mass Spectrometry.

3- and 4-Hydroxyprolines (HyP) are regioisomers that play different roles in various species and organs. Despite their distinct functions inside cells, they are generally considered indistinguishable using mass spectrometry due to their identical masses. Here, we demonstrate, for the first time, that characteristic w ions can be produced by electron-transfer/higher energy collision dissociation (EThcD) dual fragmentation technique to confidently discriminate 3-HyP/4-HyP isomers. An integrated and high throughput strategy was developed which combined online LC separation with EThcD for large-scale differentiation of 3-HyP/4-HyP in complex samples. An automated algorithm was developed for charge state dependent characterization of 3-HyP/4-HyP isomers. Using this combined discrimination approach, we identified 108 3-HyP sites and 530 4-HyP sites from decellularized pancreas, allowing more than 5-fold increase of both 3-HyP and 4-HyP identifications compared to previous reports. This approach outperformed ETD and HCD in the analysis of HyP-containing peptides with unique capacity to generate w ions for HyP discrimination, improved fragmentation of precursor ions, as well as unambiguous localization of modifications. A high content of 3-HyP was observed in the C-terminal (GPP)n domain of human CO1A1, which was previously only identified in vertebrate fibrillar collagens from tendon. Unexpectedly, some unusual HyP sites at Xaa position in Gly-HyP-Ala, Gly-HyP-Val, Gly-HyP-Gln, Gly-HyP-Ser, and Gly-HyP-Arg were also confirmed to be 3-hydroxylated, whose functions and enzymes are yet to be discovered. Overall, this novel discrimination strategy can be readily implemented into de novo sequencing or other proteomic search engines.