Discriminant Function Analysis Research Articles

Assessing the reliability and accuracy of sex estimation models utilizing sternal morphometry derived from computed tomography in the Ghanaian population

Sex estimation models are specific to populations and cannot be generalized due to genetic and environmental variabilities. This retrospective cross-sectional study, conducted between January and September 2023 at the Tamale Teaching Hospital, included 119 (50.9 %) females and 115 (49.1 %) males aged 23–82 years. Measurements, including manubrium length (M), manubrium width (MW), sternal body length (B), combined manubrium and sternal body lengths (CL), corpus sterni width at first sternebrae (CSWS1), and corpus sterni width at third sternebrae (CSWS3), were obtained from Computerized Tomographic (CT) images of the sternum using DICOM Viewer, accurate to 0.1 cm. Subsequently, sternal area (SA) and sternal index (SI) were calculated. Univariable and stepwise multivariable discriminant function analysis (DFA) and logistic regression (LR) models were developed using a training sample (70 %), and cross-validation was performed on a holdout sample (30 %). Results showed that the linear measurements, excluding M, and sternal area were higher in males than females (P<0.001), while the sternal index was <50 % in males but >50 % in females (P<0.001). Univariable sex estimation accuracies, in cross-validation, ranged from 43.7 % to 92.9 % in DFA and 50.0–92.9 % in LR. For multivariable models, the accuracy ranges were 92.9–94.3 % in DFA and 91.6–93.0 % in LR. The sternal body length was the most accurate at 90.1 % in DFA and 90.2 % in LR, with lower sex bias (male-female) in LR than in DFA (-0.1 vs. 8.7). The sternum proves valuable for sex estimation, with sternal body length as the most accurate linear measurement. However, multivariable models, particularly LR, demonstrate higher accuracy compared to DFA.

Morphological variation in Schizothorax oconnori, Schizothorax waltoni (Teleostei: Cyprinidae: Schizothoracinae), and their natural hybrids from the middle Yarlung Zangbo River, Tibet.

The morphological variation in Schizothorax oconnori, Schizothorax waltoni, and their natural hybrids was examined using conventional and image-based analysis approaches. In total, 38 specimens of S. oconnori, 35 of S. waltoni, and 37 natural hybrids were collected from the Shigatse to the Lhasa section of the Yarlung Zangbo River during June and July 2021. A total of 21 morphometric, 4 meristic, and 27 truss variables were employed for the classification of S. oconnori, S. waltoni, and natural hybrids. Principal component analysis (PCA) and factor analysis (FA), as well as discriminant function analysis (DFA) and cluster analysis (CA), were conducted to identify differences based on traditional and truss measurements. Four principal components explained 75.92% of the variation among the morphometric characters, while five principal components accounted for 79.69% of the variation among the truss distances. FA results showed that factor 1 was associated with head shape, and factor 2 was associated with fins based on morphometric characters. Among the truss characters, factor 1 was related to head shape, and factor 2 was related to chest shape. In DFA, morphometric measurements achieved higher accuracy (100%) compared to truss distances (94.55%). The head morphology of hybrids exhibited intermediate traits between S. oconnori and S. waltoni. Both morphometry-based and truss-based clustering indicated that the morphology of natural hybrids leaned toward S. oconnori. In conclusion, the combination of morphometric and truss analysis is beneficial for classifying S. oconnori, S. waltoni, and their natural hybrids. The presence of natural hybrids could be considered an evolutionary response to the differentiation of nutritional and spatial niches in the middle Yarlung Zangbo River.

Selection of mungbean (Vigna radiata L.) mutants with respect to seasonal variation of summer and spring using discriminant function analysis

The current study was carried out at Nuclear Institute of Agriculture, Tandojam to assess ten mungbean mutants together with one check cultivar in two separate cropping seasons. The findings revealed that all mutants, with the exception of the branches per plant, had significantly different examined traits. By characterizing ten variables, including plant height (cm), number of branches/plant, number of seeds per pod, grain yield per plot (g/plot), grain weight per plant, pod length (cm), pods per plant, days to flowering, above ground biological weight per plot (g/plot) and days to maturity, the results could considerably differentiate between low and high producing mutants. Discriminant analysis was used to choose high-yielding genotypes. The discriminant score demonstrated a significant canonical correlation of 0.994** and could account for 98.8 % of differences in mungbean production. According to the results of discriminant function analysis, the most significant features are pod length, days to flowering, plant height and above ground biological weight. The highest discriminant scores were displayed by the genotypes AEM66, AEM27, AEM25 and AEM14, identified as high yielding mutants. The low yielding mungbean mutants, designated Viz, AEM20, AEM30, AEM35, AEM-96, AEM29, AEM40 and AEM32 are those that exhibit the lowest values of the discriminant score. Mungbean cultivation is more successful in the summer than it is in the spring.

Geometric morphometric evaluation of mandibles of four sheep breeds: Bardoka, İvesi, Polish Mountain sheep and Turcana.

The enduring relationship between humans and domestic sheep has evolved over millennia, showcasing diverse uses such as meat, milk, wool, leather and fur, shaped by geographical, historical, cultural and social factors. The sheep breeds discussed include the Ivesi from Southeastern Anatolia, known for its varied animal products; the resilient Turcana breed of Romania; Kosovo's Bardoka, valued for its triple-purpose characteristics; and Poland's Polish Mountain Sheep, uniquely utilized for milk production in cheese making. Sheep, with their enduring relationship with humans and significant economic importance, have attracted scientific interest in morphometric studies of their mandibles, yielding valuable data applicable across various fields including basic anatomy, veterinary clinical anatomy, zooarchaeology and veterinary forensic medicine. Traditional morphometric studies rely on statistical methods to compare length, depth and angular ratios between anatomical formations, often highlighting differences between specific points but not fully revealing shape variations between distinct groups. Geometric morphometric analysis has emerged as a preferred method in recent years, enabling shape analyses using coordinate data from various imaging techniques, facilitating a comprehensive examination of mandibular morphometrics among sheep breeds across different countries. This study involved four sheep breeds from different countries, namely İvesi from Turkey, Bardoka from Kosovo, Polish Mountain Sheep from Poland and Turcana from Romania, with a total of 70 mandibles sourced from various veterinary faculties. Mandibular photographs were meticulously captured, focusing on the right side of mandible pairs and placing landmarks and semi-landmarks along the entire edge, enabling geometric morphometric analysis using tpsUtil, tpsDig2 and MorphoJ software. The analysis included principal component analysis, canonical variate analysis and discriminant function analysis for pairwise comparisons, facilitating a comprehensive examination of mandibular shape variations among the different sheep breeds. Using geometric morphometric methods, this study analysed mandibles from four distinct sheep breeds sourced from different countries, revealing notable variations in regions such as the ramus mandibula, angulus mandibula and incisive areas, attributed to genetic, geographical and dietary influences, highlighting the importance of continued research to better comprehend these shape differences.

The Skull Shape Analysis of Wistar Albino Rats: A Geometric Morphometric Study

The aim of the study was to evaluate the skull shape of Wistar albino rats using the geometric morphometry method. For this purpose, a total of 52 adult rat skulls, 31 female and 21 male, were evaluated. Skulls were photographed from equal distance in dorsal and ventral directions. 13 and 18 landmarks were marked in dorsal and ventral images, respectively. Percentage variation values of principal components were calculated by performing principal component analysis in the MorphoJ program. Average shape graphs showing the positive and negative boundaries of the first three principal components were obtained. It was defined that scatter plot graphic showing the degree of grouping of male and female rats according to the first and second principal component. The study also examined the allometric effect with regression. Discriminant function analysis was performed to examine gender dimorphism. As a result of the study, it was determined that the most significant shape change was in the zygomatic arc and palate regions according to individuals, while it was also in the neurocranium acording to gender. We believe that the study will contribute to anatomy, biology and archeology studies on the shape of skull.

Typology of Parent-to-Child Emotions: A Study of Japanese Parents of a Foetus up to a 12-Year-Old Child.

Background: Emotions are the fundamental origin of parent-child bonding, which is measurable by the Scale for Parent-to-Child Emotions (SPCE) based on the theories of basic and self-conscious emotions. Methods: This study is based on the data from a cross-sectional study that we previously reported. The data consist of fathers and mothers who had a child/children, whose eldest child's age was at the foetal stage up to 12 years old, and were recruited via the Internet (N = 4600). A series of cluster analyses using factor scores (theta[Ө]s) of all domains of the SPCE were conducted. After the clusters emerged, the fathers and mothers allocated to each cluster were compared by the child's age stage. The validation of the classifications was also conducted using ANOVAs and chi-squared tests. A discriminant function analysis was conducted. Results: The participant mothers and fathers were classified into Cluster 1 (Lack of Bonding Emotions, n = 509), Cluster 2 (Bonding Disorder, n = 1471), Cluster 3 (Ambivalent Bonding Emotions, n = 1211), and Cluster 4 (Positive Bonding, n = 1409). Across the four clusters, there were no differences in the age of the parents or the gender of the child. During the second trimester, mothers made up the majority of Cluster 4 (Positive Bonding), totalling 81 cases (37.5%), whereas fathers made up the majority of Cluster 2 (Bonding Disorder), totalling 126 cases (60.0%). The three linear discriminants (LDs) well predicted the four clusters, and their functions showed cross validation. Conclusions: The typology of the SPCE is helpful to understand individual differences in terms of parental emotional bonding.

Diabetes disrupts osteometric and trabecular morphometric parameters in the Zucker Diabetic Sprague-Dawley rat femur.

Type 2 diabetes mellitus is increasingly becoming more prevalent worldwide together with hospital care costs from secondary complications such as bone fractures. Femoral fracture risk is higher in diabetes. Therefore, this study aimed to assess the osteometric and microarchitecture of the femur of Zucker Diabetic Sprague-Dawley (ZDSD) femur. Ten-week-old male rats (n=38) consisting of 16 control Sprague-Dawley (SD) and 22 ZDSD rats were used. The rats were terminated at 20 weeks and others at 28 weeks of age to assess age, diabetes duration effects and its severity. Bilateral femora were taken for osteometry, bone mass measurements and micro-focus X-ray computed tomography scanning to assess the trabecular number (TbN), thickness (TbTh), spaces (TbSp), bone tissue volume to total volume (BV/TV) and volume (BV). Diabetic rats had shorter (except for 20-weeks-old), lighter, narrower, and less robust bones than SD controls that wered more robust. Although cortical area was similar in all diabatic and control rats, medullary canal area was the largest in ZDSD rats. This means that the diabetic rats bones were short, light and hollow. Diabetic rats aged 20 weeks had reduced BV, BV/TV, TbN with more spacing (TbSp). In contrast, the 28 weeks old diabetic rats only showed reduced BV and TbN. Discriminant function analysis revealed, for the first time, that osteometric parameters and TbTh, TbN, and TbSp were affected by diabetes. This knowledge is valuable in the management of diabetic complications.

Adolescent Violence in the Home Among Youth Presenting to an Early Psychosis Service: An Exploration of Contributing Factors.

Adolescent violence in the home is a growing public health issue and remains under reported and under-researched. The focus of the present research is to investigate factors that may contribute to adolescent violence in the home, among acohort of young people with co-occurring early psychosis. Data relates to 50 young people (16 females, 33 males, 1 nonbinary) aged from 16-25 who were clients at a youth early psychosis service in Melbourne, Australia. Results from a discriminant function analysis revealed the two major contributing factors to whether someone used violence in the home, were whether a young person had a coexisting neurodevelopmental or intellectual disability and whether they used violence outside the home. The findings provide preliminary evidence that engaging in violence outside the home and the presence of a neurodevelopmental or intellectual disability may make it more likely for young people with early psychosis to use violence in the home.

Development of a multi-entry identification key for economically important fruit fly larvae (Diptera, Tephritidae, Dacinae).

Identification of fruit fly larvae is difficult due to the limited morphological characteristics present. However, this is the stage at which fruit flies are intercepted at ports of entry through horticultural imports. Molecular tools are useful but are time-consuming and expensive compared to morphological identifications. This project aims to use available information from the literature and our own research to build a multi-entry identification key for thirteen tephritid species and species groups that are of economic concern for the European Union. Third-instar larvae were obtained from different regions and hosts. Thirteen species or representatives of species groups were obtained, including Ceratitis, Dacus, Bactrocera and Zeugodacus spp. The cephalopharyngeal skeletons were dissected out, cleared in a 10% NaOH solution, dehydrated and mounted in Euparal on glass slides. Images of at least 20 larvae/species were captured using a compound microscope fitted with a camera. Measurements were taken of the mounted mandibles and the number of tubules and their position in the anterior spiracles in relation to the cephalic skeleton were noted. Differences between morphometric parameters were tested via ANOVA and verified using discriminant function analysis. A matrix was compiled including nine characters for which significant inter-specific differentiation was preliminarily detected. The key was converted into a mobile application by LucID.

Sex estimation research trends in forensic anthropology between 2000 and 2022 in five prominent journals.

In forensic anthropology, osteological sex estimation methods are continuously reevaluated and updated to improve classification accuracies. Therefore, to gain a comprehensive understanding of recent trends in sex estimation research in forensic anthropology, a content analysis of articles published between 2000 and 2022 in Forensic Science International, the Journal of Forensic Sciences, the International Journal of Legal Medicine, the American Journal of Biological Anthropology, and Forensic Anthropology, was performed. The main goals of this content analysis were to (1) examine trends in metric versus morphological research, (2) examine which areas of the skeleton have been explored, (3) examine which skeletal collections and population affinities have been most frequently utilized, and (4) determine which statistical methods were commonly implemented. A total of 440 articles were coded utilizing MAXQDA and the resulting codes were exported for analysis. Statistical analyses were conducted utilizing the Cochran-Armitage and Jonckheere-Terpstra tests for trends, as well as Fisher-Freeman-Halton tests. The results demonstrate that sex estimation research published in these journals has prioritized metric over morphological methods. Further, the most utilized skeletal regions continue to be the skull and pelvis, while the most popular classification statistics continue to be discriminant function analysis and logistic regression. This study also demonstrates that a substantial portion of research has been conducted utilizing U.S. and Europe-based collections and limited populations. Based on these results, future sex estimation research must continue exploring the use of long bones and other postcranial elements, testing newer methods of analysis, as well as developing population-inclusive methods.

Distinct profiles of mental health need and high need overall among New Zealand adolescents - Cluster analysis of population survey data.

The objective was to identify clinically meaningful groups of adolescents based on self-reported mental health and wellbeing data in a population sample of New Zealand secondary school students. We conducted a cluster analysis of six variables from the Youth19 Rangatahi Smart Survey (n = 7721, ages 13-18 years, 2019): wellbeing (World Health Organization Well-Being Index), possible anxiety symptoms (Generalized Anxiety Disorder 2-item, adapted), depression symptoms (short form of the Reynolds Adolescent Depression Scale) and past-year self-harm, suicide ideation and suicide attempt. Demographic, contextual and behavioural predictors of cluster membership were determined through multiple discriminant function analysis. We performed cross-validation analyses using holdout samples. We identified five clusters (n = 7083). The healthy cluster (n = 2855, 40.31%) reported positive mental health across indicators; the anxious cluster (n = 1994, 28.15%) reported high possible anxiety symptoms and otherwise generally positive results; the stressed and hurting cluster (n = 667, 9.42%) reported sub-clinical depression and possible anxiety symptoms and some self-harm; the distressed and ideating cluster (n = 1116, 15.76%) reported above-cutoff depression and possible anxiety symptoms and high suicide ideation; and the severe cluster (n = 451; 6.37%) reported the least positive mental health across indicators. Female, rainbow, Māori and Pacific students and those in higher deprivation areas were overrepresented in higher severity clusters. Factors including exposure to sexual harm and discrimination were associated with increasing cluster severity. We identified high prevalence of mental health challenges among adolescents, with distinct clusters of need. Youth mental health is not 'one size fits all'. Future research should explore youth behaviour and preferences in accessing support and consider how to best support the mental health of each cluster.

Modelling the paleopedological development of loess/palaeosol sections using discriminant function analysis of compositional geoscience data, case study in Eastern Croatia

Previous studies on the mineralogical differentiation of Pleistocene loess/palaeosol sections focused on the description and source material of four loess/palaeosol sections located on the eastern border of Croatia along the Danube: Zmajevac, Zmajevac I, Erdut and Šarengrad. The authors demonstrated the decreasing influence of the Danube and the increasing influence of the rivers draining the Central Bosnian Mountains of the Dinaric Ophiolite Zone both important source areas for aeolian sediments at the southern edge of the Carpathian Basin that transport material from the Central Bosnian Mountains. The aim of this research is to identify the palaeoclimatic factors that influenced the pedogenetic development of the studied palaeosols. The model was created based on the research results of the same four loess/palaeosol sequences in Eastern Croatia. This model can also be applied in other locations to determine the influence of certain climatic factors on the degree of pedogenetic development of individual palaeosols. The loess/palaeosol sequences were divided into eight comprehensive groups (horizons) based on their genesis, degree of pedological development and/or position in the soil profiles. The explanation of the typical patterns occurring between the studied horizons is based on the construction of a Discriminant Function Model (DFM) resulting from the analysis of the compositional data (CoDa) of the geochemical (major and trace elements) and granulometric (grain size) data of the loess/palaeosols in combination with external variables such as weathering coefficients and chemical soil properties. In the final phase, the DFM was transformed from structural (mathematical) to functional (process) terms. This revealed that three main themes dominate the formation of Pleistocene loess/palaeosol sequences: 1) the separation of well-developed palaeosols from parent material; 2) the separation of automorphic palaeosols from hydromorphic soils exposed to post-pedogenic waterlogging conditions; and 3) the differentiation of horizons (soils and alluvium) formed by the redeposition (by water or mudflows) of previously deposited aeolian material, regardless of whether and to what extent it was exposed to post-sedimentary pedogenesis.

Forensic and clinical implications of scapula length: A radiological study in Delta State, Nigeria

Abstract Background: The morphometry of the scapula exhibits sexual dimorphism, which makes it crucial for sex determination in forensic contexts and guides orthopedic surgeons in the management of shoulder girdle fractures. Objective: This study aimed to establish population-specific discriminant formulas for sex determination using the scapula length from radiographs. Materials and Methods: This observational cross-sectional study retrospectively analyzed 200 postero-anterior chest radiographs (113 males and 87 females) from a referral hospital in Delta State, Nigeria. Inclusion criteria comprised fully ossified scapulae in patients aged 25–60 years. Scapula length was measured using digital calipers, and statistical analyses, including discriminant function analysis, were performed to create population-specific equations for sex prediction. Results: Males exhibited significantly longer scapulae than females. The right scapula length was longer and demonstrated higher overall accuracy (78.5%) in sex determination than the left scapula (75.0%). Combining right and left scapula lengths increased the accuracy to 83.0%. Conclusion: The study provides population-specific normative values for scapula length and highlights the sexual dimorphism of the scapula length. The length of the right scapula was more accurate in predicting sex (78.5%) and when combined with that of the left scapula, the accuracy increased (83.0%).

Morphometrics and Truss-networking distances among three species of croaker (Johnius borneensis, Johnius argentatus and Johnius belangerii) from Bangladesh coast of the Bay of Bengal

Morphometric features are efficiently used for the differentiation of species and long-term management of fish populations. Truss analysis is a frequently used taxonomic method as well as a stock identification tool to dissimilitude the morphologically similar species. Using landmark-based truss networking techniques following 18 morphometric lengths, 10 meristic counts, and 23 truss-network distance, the morphological variation of three croaker species viz. Johnius borneensis, Johnius argentatus, and Johnius belangerii were examined from Bangladesh coast. Data were analyzed and visualized through univariate ANOVA, canonical discriminate function analysis (DFA), and principal component analysis (PCA). Results found that the first DFA was responsible for 80.6% &amp; 81.1%, whereas the second DFA was responsible for 19.4% &amp; 18.9% variations among three species for the morphometric and truss-distances, respectively. In addition, 14 out of 18 morphometric and 12 out of 23 truss-network measurements were significantly different (p &lt; 0.05) among means of three species. 1st PCA found 70.76% &amp; 64.49% explained variations and 2nd PCA displayed 12.8% &amp; 11.5% explained variations respectively for morphometric and truss distances. The findings of the study demonstrates that J. borneensis and J. belangerii are highly morphologically similar and J. argentatus is completely distinct which might be due to their physiological and genetic variations. The present study might be helpful in differentiating species and managing existing stocks of marine fish. Further studies regarding the molecular characterization of the Cytochrome c oxidase subunit I (COI) gene could confirm the genetic variations among these species. Bangladesh J. Zool. 51(3): 233-251, 2023

Assessment of the salt tolerance of diverse bread wheat (Triticum aestivum L.) genotypes during the early growth stage under hydroponic culture conditions

ObjectivesSoil salinity affects the growth of crop plants, leading to reduced productivity, and is a major challenge for wheat production worldwide. Various adaptations and mitigation approaches in combination with tolerant wheat genotypes can be useful for the sustainability of crop production in saline environments. However, the development of salt-tolerant wheat genotypes is one of the best and most efficient solutions for obtaining desirable yields. Considering these issues, an investigation was carried out under hydroponic nutrient culture conditions to assess the genetic variability and selection of salt-tolerant wheat genotypes by categorizing inequitable morphophysiological and genetic variability as well as multivariate analysis. MethodsTo meet the objectives of this study, 100 wheat genotypes were tested hydroponically in 0 (control) and 15 dS m−1 salt solutions. ConclusionFor all the wheat genotypes grown under saline conditions, the shoot length (SL), root length (RL), shoot fresh weight (SFW), root fresh weight (RFW), total fresh weight (TFW), shoot dry weight (SDW), root dry weight (RDW), and total dry weight (TDW) decreased significantly. Furthermore, significant variation was observed among the genotypes in terms of their characteristics only under saline conditions. In the case of genetic diversity analysis, a high genotypic coefficient of variation (GCV), phenotypic coefficient of variation (PCV), genetic advance in the percentage of the mean (GAM) and high heritability (h2b) were recorded for all tested wheat genotypes based on the SDW, RDW and TDW. Correlation analysis for both genotypic and phenotypic relationships revealed strong positive correlations for TDW, SDW, TFW and SFW. Principal component analysis (PCA) revealed that TDW, TFW, SDW, and SFW were the most discriminative variables for the wheat genotypes, which was confirmed by discriminant function analysis (DFA). PCA-biplot analysis also revealed significant positive correlations between SDW and SFW and between TDW and TFW. Hierarchical cluster analysis was performed for ten clusters based on the relative performance of the genotypes, where the genotypes were characterized into salt-tolerant, medium-salt-tolerant, medium-salt-susceptible and salt-susceptible groups. Among the genotypes, G11, G25 and G29 under cluster VII were categorized as salt tolerant based on their outstanding performance in terms of characteristics only under saline conditions. D2 analysis proved that the wheat genotypes of this cluster were highly divergent from the other cluster genotypes; as a result, these genotypes might be utilized as parents in the development of salt-tolerant wheat genotypes. The current study concluded that SDW and TDW could be employed as criteria for selecting and defining salt-tolerant genotypes during the early growth stage of wheat.

Identification of long-preserved specimens reveals the historical geographic range of the Patagonian lamprey Geotria macrostoma (Burmeister, 1868) in southern South America.

The lamprey genus Geotria Gray, 1851 currently includes only two species: G. australis and G. macrostoma. However, taxonomic relationships within the genus have traditionally been ambiguous and difficult to establish due to the extreme changes in morphology, dentition, and coloration that lampreys undergo during their life cycles, particularly during upstream migration and sexual maturation. Consequently, several lamprey specimens held in museum collections have remained unidentified, especially those from Argentina. In this study, a series of morphometric characters were subjected to discriminant function analysis (DFA) to identify the lamprey species collected during 1867-2004 from the de la Plata River and Patagonia. These specimens are housed at the Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" in Buenos Aires, the Museo de Historia Natural de Montevideo, and the Naturhistoriska riksmuseet in Stockholm. Based on the proportions of the length of the oral disc, prebranchial, and pre-caudal body regions, and the depth of the trunk, DFA provided conclusive evidence that the specimens corresponded to the recently revalidated G. macrostoma (Burmeister, 1868), which was originally incorrectly named as Petromyzon macrostomus Burmeister, 1868, Exomegas macrostomus (Berg, 1899), Geotria chilensis (Berg, 1895), and Geotria macrostoma f. gallegensis Smitt, 1901, as well as other nontype museum individuals of uncertain taxonomic status. The identifications of these long-preserved museum specimens provided key information on the historical geographic range of Argentinian lampreys and suggest that the disappearance of the species reported from northern localities (the Pampean Region) can be attributed to the degradation of their critical habitats, primarily caused by anthropogenic impact and climate change.

Vocal repertoire of Microhyla nilphamariensis from Delhi and comparison with closely related M. ornata populations from the western coast of India and Sri Lanka.

Advertisement calls in frogs have evolved to be species-specific signals of recognition and are therefore considered an essential component of integrative taxonomic approaches to identify species and delineate their distribution range. The species rich genus Microhyla is a particularly challenging group for species identification, discovery and conservation management due to the small size, conserved morphology and wide distribution of its members, necessitating the need for a thorough description of their vocalization. In this study, we provide quantitative description of the vocal behaviour of Microhyla nilphamariensis, a widely distributed south Asian species, from Delhi, India, based on call recordings of 18 individuals and assessment of 21 call properties. Based on the properties measured acrossed 360 calls, we find that a typical advertisement call of M. nilphamariensis lasts for 393.5± 57.5 ms, has 17 pulses on average and produce pulses at rate of 39 pulses/s. The overall call dominant frequency was found to be 2.8 KHz and the call spectrum consisted of two dominant frequency peaks centered at 1.6 KHz and 3.6 KHz, ranging between 1.5-4.1 KHz. Apart from its typical advertisement call, our study also reveals the presence of three 'rare' call types, previously unreported in this species. We describe variability in call properties and discuss their relation to body size and temperature. We found that overall dominant frequency 1 (spectral property) was found to be correlated with body size, while first pulse period (temporal property) was found to be correlated with temperature. Further, we compare the vocal repertoire of M. nilphamariensis with that of the congener Microhyla ornata from the western coast of India and Sri Lanka and also compare the call properties of these two populations of M. ornata to investigate intra-specific call variation. We find statistically significant differentiation in their acoustic repertoire in both cases. Based on 18 call properties (out of 20), individuals of each locality clearly segregate on PCA factor plane forming separate groups. Discriminant function analysis (DFA) using PCA factors shows 100% classification success with individuals of each locality getting classified to a discrete group. This confirms significant acoustic differentiation between these species as well as between geographically distant conspecifics. The data generated in this study will be useful for comparative bioacoustic analysis of Microhyla species and can be utilized to monitor populations and devise conservation management plan for threatened species in this group.

Fracture Density Prediction of Basement Metamorphic Rocks Using Gene Expression Programming

Many methods have been developed to detect and predict the fracture properties of fractured rocks. The standard data sources for fracture evaluations are image logs and core samples. However, many wells do not have these data, especially for old wells. Furthermore, operating both methods can be costly, and, sometimes, the data gathered are of bad quality. Therefore, previous research attempted to evaluate fractures indirectly using the widely available conventional well-logs. Sedimentary rocks are widespread and have been studied in the literature. However, fractured reservoirs, like igneous and metamorphic rock bodies, may also be vital since they provide fluid migration pathways and can store some hydrocarbons. Hence, two fractured metamorphic rock bodies are studied in this study to evaluate any difference in fracture responses on well-log properties. Also, a quick and reliable prediction method is studied to predict fracture density (FD) in the case of the unavailability of image logs and core samples. Gene expression programming (GEP) was chosen for this study to predict FD, and ten conventional well-log data were used as input variables. The model produced by GEP was good, with R2 values at least above 0.84 for all studied wells, and the model was then applied to wells without image logs. Both selected metamorphic rocks showed similar results in which the significant parameters to predict FD were the spectral gamma ray, resistivity, and porosity logs. This study also proposed a validation method to ensure that the FD value predictions were consistent using discriminant function analysis. In conclusion, the GEP method is reliable and could be used for FD predictions for basement metamorphic rocks.

Orbital shape in goat and sheep: Symmetric analysis.

The aim of this study is to evaluate orbital symmetry in goat and sheep skulls. For this purpose, a total of 83 skulls, including 50 sheep and 33 goat skulls, were used in the study. Geometric morphometry method was applied. For symmetric analysis, one side of each orbit was photographed twice and mirror images were created. There were 36 landmards marked to determine the outer limit of the orbita. As a result of the study, asymmetric components (fluctuating asymmetry and directional asymmetry) for shape were statistically significant in both goats and sheep (p < 0.0001). The first three principal components explained 52.558% of the total shape variation in goats and 61.245% in sheep. This value for symmetric components was 59.095% and 67.742% for goats and sheep, respectively, and 66.791% and 71.154% for asymmetric components. As a result of discriminant function analysis, right and left orbital shapes showed grouping characteristics with similar success rates according to species. Although limited, the right orbit in goats (100%) and the left orbit in sheep (96.5%) were grouped more accurately.

Beyond the dominant narratives: Identifying Indigenous and African individuals in Quebec St-Lawrence Valley colonial cemeteries by three-dimensional morphometrical analysis of the temporal bone

In Quebec, written accounts of free or enslaved Indigenous and African individuals during colonial times are few and limited. Three-dimensional geometric morphometric methods applied on 214 temporal bones individuals are used to explore intra-cemetery population variation throughout three centuries (1683–1878), to identify plausible non-European or admixed individuals. First, Principal Component Analysis (PCA) was generated from populations originated from Africa, North-America (Indigenous) and Europe where colonial cemeteries are projected to assess their degree of overlap with the reference groups. Second, Discriminant Function Analysis (DFA) based on typicality probabilities also allowed to assign unknown individuals to the three reference groups. Our results highlighted discrepancy between PCA and DFA. With the PCA, Quebec colonial groups overlap with the Europeans except for three individuals. For the DFA, 64 % (n = 136) were classified as typical to one group and 36 % as atypical (n = 77). Most were European, (82 %; n = 112), followed by those as Indigenous (7 %; n = 10), intermediate between Africans and Indigenous (6 %; n = 8) and Africans (5 %; n = 7). Compared with previous research, one individual from the first Protestant cemeteries of St-Matthew in Quebec could be assessed as plausible African or admixed origin. Two others need further analysis: one from St-Matthew and one from the first Catholic cemetery of Notre-Dame in Montreal. Finally, in response to dominant narratives that focused mainly on Euro-colonists, this research provided for the first time a new snapshot of several colonial population diversity in Quebec, underlining the presence of marginalized groups -especially those of African origin, who are absent from the archaeological reports under study.