Dimethylsulfide Production Research Articles

Influence of the Mississippi River plume and non-bioavailable DMSP on dissolved DMSP turnover in the northern Gulf of Mexico

Environmental contextDimethylsulfoniopropionate (DMSP) comprises an important fraction of the organic carbon produced by phytoplankton, and is a major source of carbon and sulfur for heterotrophic bacteria. Here, we show that a non-bioavailable fraction of DMSP recently discovered in coastal waters also exists in oligotrophic open-ocean waters. Taking account of the non-bioavailable pool improved estimates of cycling rates of DMSP and its contribution to bacterial nutrition. AbstractMicrobial cycling of dissolved dimethylsulfoniopropionate (DMSPd) and the fate of DMSP-sulfur were measured in the northern Gulf of Mexico off the Louisiana coast in September 2011 using the tracer 35S-DMSPd. Salinity ranged from 31.2ppt in the Mississippi River plume to 36.5ppt offshore. Total DMSP concentrations were significantly higher at the river-influenced stations (12–27nM) than offshore (6–14nM). From 8.7 to 27% of the measured DMSPd, equivalent to 0.1 to 0.23nM, was refractory (i.e. non-bioavailable). We subtracted refractory DMSPd from the measured DMSPd concentrations when calculating DMSPd consumption rates with the tracer 35S-DMSPd. DMSPd consumption and bacterial production were respectively 8 and 7 times higher in the river plume compared with offshore. Incorporation of DMSP-sulfur into biomass was almost three times higher in river-influenced water, whereas the dimethylsulfide (DMS) yield was 3.5 times lower in the river plume compared with offshore. Accordingly, DMSP contributed over 3 times more to the bacterial demand for both carbon and sulfur in the river-influenced water. Despite lower DMS yields in the river plume, the fast DMSP turnover resulted in a 2.7-times higher DMS production compared with offshore waters. Mississippi River inputs and the resulting high productivity led to a rapid turnover of DMSP and high DMS production in the river plume compared with oligotrophic Gulf of Mexico waters. Failure to account for refractory DMSPd when using the 35S-DMSP method will lead to significant overestimation of the DMSPd turnover flux and its contributions to C and S cycling.

Influence of vitamin B12 availability on oceanic dimethylsulfide and dimethylsulfoniopropionate

Environmental context Cobalamin, or vitamin B12, is receiving increased attention as a critical trace nutrient in the growth and metabolic processes of oceanic phytoplankton and bacterial communities. We present evidence that indicates B12 has a more significant role in the biogeochemical cycling of the climatically important compounds dimethylsulfide and dimethylsulfoniopropionate than previously understood. Several possible mechanisms are examined that link cellular-level processes involving B12 to global-scale biogeochemical processes involving the oceanic cycling of dimethylsulfoniopropionate and dimethylsulfide. Abstract Evidence is presented showing that dissolved dimethylsulfoniopropionate (DMSPd) and dimethylsulfide (DMS) concentrations are influenced by the availability of vitamin B12 in two oceanographically distinct regions with different DMS production capacities, the central equatorial Pacific Ocean and the Ross Sea, Antarctica. In both locations, addition of B12 to incubation experiments resulted in decreases in DMS and, in some cases, DMSPd concentrations relative to unamended controls. In no case did increasing iron availability significantly (α=0.1) alter DMS concentrations relative to controls. The relative decreases in DMS between B12 addition and control experiments were significant (α=0.1) in five of seven experiments conducted at ambient iron levels. Overall, DMS concentrations were on average 33.4% (±15.1%; 1 standard deviation) lower, relative to unamended controls, by the end of incubation experiments when B12 was added. Declines in DMSPd were observed in three of five experiments. Similar trends were observed when B12 was added to iron-supplemented bottle incubation experiments (30.4±10.4% lower final DMS concentrations in +B12Fe treatments relative to +Fe treatments). Several possible molecular-level explanations exist for this link between B12 and DMS production, including potential B12 dependence of methyltransferase enzymes involved in both DMS and DMSP degradation. Although the enzymology of these reactions remains unclear, the relationships described here provide evidence for plausible mechanisms behind the microbial modulation of oceanic DMS.

Revising upper-ocean sulfur dynamics near Bermuda: new lessons from 3 years of concentration and rate measurements

Environmental context Microscopic marine organisms have the potential to influence the global climate through the production of a trace gas, dimethylsulfide, which contributes to cloud formation. Using 3 years of observations, we investigated the environmental drivers behind the production and degradation of dimethylsulfide and its precursor dimethylsulfoniopropionate. Our results highlight the important role of the microbial community in rapidly cycling these compounds and provide an important dataset for future modelling studies. Abstract Oceanic biogeochemical cycling of dimethylsulfide (DMS), and its precursor dimethylsulfoniopropionate (DMSP), has gained considerable attention over the past three decades because of the potential role of DMS in climate mediation. Here we report 3 years of monthly vertical profiles of organic sulfur cycle concentrations (DMS, particulate DMSP (DMSPp) and dissolved DMSP (DMSPd)) and rates (DMSPd consumption, biological DMS consumption and DMS photolysis) from the Bermuda Atlantic Time-series Study (BATS) site taken between 2005 and 2008. Concentrations confirm the summer paradox with mixed layer DMS peaking ~90 days after peak DMSPp and ~50 days after peak DMSPp:Chl. A small decline in mixed layer DMS was observed relative to those measured during a previous study at BATS (1992–1994), potentially driven by long-term climate shifts at the site. On average, DMS cycling occurred on longer timescales than DMSPd (0.43±0.35 v. 1.39±0.76 day–1) with DMSPd consumption rates remaining elevated throughout the year despite significant seasonal variability in the bacterial DMSP degrader community. DMSPp was estimated to account for 4–5% of mixed layer primary production and turned over at a significantly slower rate (~0.2 day–1). Photolysis drove DMS loss in the mixed layer during the summer, whereas biological consumption of DMS was the dominant loss process in the winter and at depth. These findings offer new insight into the underlying mechanisms driving DMS(P) cycling in the oligotrophic ocean, provide an extended dataset for future model evaluation and hypothesis testing and highlight the need for a reexamination of past modelling results and conclusions drawn from data collected with old methodologies.

Ocean acidification has different effects on the production of dimethylsulfide and dimethylsulfoniopropionate measured in cultures of Emiliania huxleyi and a mesocosm study: a comparison of laboratory monocultures and community interactions

Environmental context Approximately 25% of CO2 released to the atmosphere by human activities has been absorbed by the oceans, resulting in ocean acidification. We investigate the acidification effects on marine phytoplankton and subsequent production of the trace gas dimethylsulfide, a major route for sulfur transfer from the oceans to the atmosphere. Increasing surface water CO2 partial pressure (pCO2) affects the growth of phytoplankton groups to different degrees, resulting in varying responses in community production of dimethylsulfide. Abstract The human-induced rise in atmospheric carbon dioxide since the industrial revolution has led to increasing oceanic carbon uptake and changes in seawater carbonate chemistry, resulting in lowering of surface water pH. In this study we investigated the effect of increasing CO2 partial pressure (pCO2) on concentrations of volatile biogenic dimethylsulfide (DMS) and its precursor dimethylsulfoniopropionate (DMSP), through monoculture studies and community pCO2 perturbation. DMS is a climatically important gas produced by many marine algae: it transfers sulfur into the atmosphere and is a major influence on biogeochemical climate regulation through breakdown to sulfate and formation of subsequent cloud condensation nuclei (CCN). Overall, production of DMS and DMSP by the coccolithophore Emiliania huxleyi strain RCC1229 was unaffected by growth at 900μatm pCO2, but DMSP production normalised to cell volume was 12% lower at the higher pCO2 treatment. These cultures were compared with community DMS and DMSP production during an elevated pCO2 mesocosm experiment with the aim of studying E. huxleyi in the natural environment. Results contrasted with the culture experiments and showed reductions in community DMS and DMSP concentrations of up to 60 and 32% respectively at pCO2 up to 3000μatm, with changes attributed to poorer growth of DMSP-producing nanophytoplankton species, including E. huxleyi, and potentially increased microbial consumption of DMS and dissolved DMSP at higher pCO2. DMS and DMSP production differences between culture and community likely arise from pH affecting the inter-species responses between microbial producers and consumers.

Global alteration of ocean ecosystem functioning due to increasing human CO2 emissions

Rising anthropogenic CO2 emissions are anticipated to drive change to ocean ecosystems, but a conceptualization of biological change derived from quantitative analyses is lacking. Derived from multiple ecosystems and latitudes, our metaanalysis of 632 published experiments quantified the direction and magnitude of ecological change resulting from ocean acidification and warming to conceptualize broadly based change. Primary production by temperate noncalcifying plankton increases with elevated temperature and CO2, whereas tropical plankton decreases productivity because of acidification. Temperature increases consumption by and metabolic rates of herbivores, but this response does not translate into greater secondary production, which instead decreases with acidification in calcifying and noncalcifying species. This effect creates a mismatch with carnivores whose metabolic and foraging costs increase with temperature. Species diversity and abundances of tropical as well as temperate species decline with acidification, with shifts favoring novel community compositions dominated by noncalcifiers and microorganisms. Both warming and acidification instigate reduced calcification in tropical and temperate reef-building species. Acidification leads to a decline in dimethylsulfide production by ocean plankton, which as a climate gas, contributes to cloud formation and maintenance of the Earth's heat budget. Analysis of responses in short- and long-term experiments and of studies at natural CO2 vents reveals little evidence of acclimation to acidification or temperature changes, except for microbes. This conceptualization of change across whole communities and their trophic linkages forecast a reduction in diversity and abundances of various key species that underpin current functioning of marine ecosystems.

Biogeochemistry of dimethylsulfoniopropionate, dimethylsulfide and acrylic acid in the Yellow Sea and the Bohai Sea during autumn

Environmental context Dimethylsulfide (DMS) is a climatically important biogenic trace gas that is emitted from oceans. This research focuses on the spatiotemporal distributions of DMS and its related compounds, i.e. dimethylsulfoniopropionate (DMSP) and acrylic acid (AA), and the influencing factors in the Yellow Sea and the Bohai Sea during autumn. In addition, the sea-to-air flux of DMS, kinetic responses of DMSP consumption as well as DMS and AA production are also investigated. This study is helpful in understanding the marine sulfur cycle in marginal seas in China. Abstract The biogeochemistry of dimethylsulfoniopropionate (DMSP), dimethylsulfide (DMS) and acrylic acid (AA) in the Yellow Sea (YS) and the Bohai Sea (BS) was investigated in November 2013. The concentrations (and ranges) of total DMSP (DMSPt), dissolved DMSP (DMSPd), DMS and AA in surface waters were 30.71 (1.07–122.50), 6.60 (0.85–35.67), 1.48 (0.53–5.32) and 42.2 (13.8–352.8) nmol L–1 respectively. The concentrations of DMSPd and AA were positively correlated with chlorophyll-a levels, which suggests that phytoplankton biomass has an important function in controlling DMSPd and AA distributions. Furthermore, DMS and AA concentrations revealed significant positive relationships with DMSPd concentrations. The average ratios of AA/(DMSP+AA) and DMS/AA were 53.98 and 7.62% respectively. The vertical profiles of DMSP, DMS and AA were characterised by high concentrations that mostly occur near the surface. Even under highly variable hydrographic conditions, a positive relationship was observed between DMSPt and chlorophyll-a concentrations. The rates of DMSPd consumption, as well as DMS and AA production, significantly varied with marine environments. The sea-to-air fluxes of DMS from the YS and the BS to the atmosphere were estimated to be in the range of 3.01 to 6.91μmol m–2day–1.

Effect of Nanoparticles on DMS Consumption and DMSP Concentration in Aiptasia pallida

Wide use of nanoparticles (NPs) in day-to-day products increases the likelihood of NPs entering and effecting marine organisms as a result of direct emissions and indirect terrestrial runoff. The effects of NPs on dimethylsulfide (DMS) consumption and concentrations of dimethylsulfoniopropionate (DMSP) within the holobiont of cnidarians remain obscure. This study examines the effects of titanium dioxide (TiO2 NP) and capped silver nanoparticles (cAg NP) at 50mg/L concentrations, on the microscopically observations of physiological changes to the tropical sea anemone, Aiptasia pallida (clone CC7), the concentrations of DMS and DMSP of its intracellular symbiont Symbiodinium sp. (A02 and B01) and its surface DMS consuming bacteria. DMS was quantified during NP exposure, and 24 and 96h post exposure using gas chromatography (GC). DMS production was found to be 2.5 fold higher in A02 compared to B01. However, concentrations of particulate DMSP were only observed to increase in the B01 strain when exposed to TiO2 NP (22.90±1.55nmol h-1mg-1) compared to control (11.41±0.05nmol h-1mg-1). A common pattern was identified for the surface DMS consuming bacteria on A. pallida, regardless of Symbiodinium strain or NP treatment. During NP exposure DMS consumption was lower in all NP treatments (0.10±0.05nmol h-1mg-1) in comparison to the controls (0.19±0.19 nmol h-1mg-1). 24h post exposure, DMS consumption was higher (0.27±0.13 nmol h-1mg-1) compared to the controls (0.20±0.22nmol h-1mg-1), with DMS consumption returning to similar rates as controls in NP treatments post 96h exposure. Microscopical observations showed that cAg NP had the greatest adverse effect on both Symbiodinium strains, with approximately 40% decrease in cell density after 24h exposure, and loss of tentacles in A. Pallida being observed only in this NP treatment. This work illustrates the potentially negative impacts of NPs on DMS consumption and concentrations of DMSP in the holobiont of A. pallida, thus emphasising the need for more studies to be conducted on NP effects in the tropical marine environments.

Exceptional accumulation and retention of dimethylsulfoniopropionate by molluscs

Environmental context Animals that eat marine algae strongly affect the rate at which a compound that algae synthesise, dimethylsulfoniopropionate (DMSP), is converted to the important atmospheric climate gas dimethylsulfide (DMS). In studying the processing of DMSP by algae-eating molluscs, we have discovered that some molluscs accumulate and retain DMSP exceptionally well, but this can be very variable. With this knowledge, investigators will be able to design improved experiments to understand the effects of molluscs on DMS production in local ecosystems. Abstract Molluscs often play major roles in processing phytoplankton-synthesised dimethylsulfoniopropionate (DMSP) in local ecosystems. We find that some mollusc species retain tissue DMSP exceptionally tightly and exhibit unusually great and statistically non-normal interindividual variation in DMSP accumulation and retention. Individual mussels (Mytilus, Geukensia) living within a single clump, for example, range 6- to 11-fold in tissue [DMSP] and are often non-normal in statistical distribution. These properties cannot be explained by the elevation of the substrate on which the mussels are living or by mussel position in a clump. When mussels (Mytilus edulis) are deprived of DMSP for up to 5 weeks in depuration experiments, some individuals retain high tissue [DMSP], whereas others exhibit reduced [DMSP]. Such interindividual divergence helps explain non-normal distributions of tissue [DMSP] after depuration. We re-analyse published data from which the half-time for tissue DMSP loss during depuration can be calculated. In the only mollusc studied in this way (Haliotis), the half-time is 13–25 times longer than in similar size fish. Besides posing a challenge for DMSP mass balance studies, retention and interindividual variation may point to as yet unknown properties of molluscs: tight retention suggests functional roles for DMSP, and non-normal statistical distributions suggest discontinuities among individuals in DMSP metabolism.

Acclimation of Emiliania huxleyi (1516) to nutrient limitation involves precise modification of the proteome to scavenge alternative sources of N and P.

SummaryLimitation of marine primary production by the availability of nitrogen or phosphorus is common. E miliania huxleyi, a ubiquitous phytoplankter that plays key roles in primary production, calcium carbonate precipitation and production of dimethyl sulfide, often blooms in mid‐latitude at the beginning of summer when inorganic nutrient concentrations are low. To understand physiological mechanisms that allow such blooms, we examined how the proteome of E . huxleyi (strain 1516) responds to N and P limitation. We observed modest changes in much of the proteome despite large physiological changes (e.g. cellular biomass, C, N and P) associated with nutrient limitation of growth rate. Acclimation to nutrient limitation did however involve significant increases in the abundance of transporters for ammonium and nitrate under N limitation and for phosphate under P limitation. More notable were large increases in proteins involved in the acquisition of organic forms of N and P, including urea and amino acid/polyamine transporters and numerous C‐N hydrolases under N limitation and a large upregulation of alkaline phosphatase under P limitation. This highly targeted reorganization of the proteome towards scavenging organic forms of macronutrients gives unique insight into the molecular mechanisms that underpin how E . huxleyi has found its niche to bloom in surface waters depleted of inorganic nutrients.

Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase‐like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold

The microbial cleavage of dimethylsulfoniopropionate (DMSP) generates volatile dimethyl sulfide (DMS) and is an important step in global sulfur and carbon cycles. DddP is a DMSP lyase in marine bacteria, and the deduced dddP gene product is abundant in marine metagenomic data sets. However, DddP belongs to the M24 peptidase family according to sequence alignment. Peptidases hydrolyze C-N bonds, but DddP is deduced to cleave C-S bonds. Mechanisms responsible for this striking functional shift are currently unknown. We determined the structures of DMSP lyase RlDddP (the DddP from Ruegeria lacuscaerulensis ITI_1157) bound to inhibitory 2-(N-morpholino) ethanesulfonic acid or PO4 (3-) and of two mutants of RlDddP bound to acrylate. Based on structural, mutational and biochemical analyses, we characterized a new ion-shift catalytic mechanism of RlDddP for DMSP cleavage. Furthermore, we suggested the structural mechanism leading to the loss of peptidase activity and the subsequent development of DMSP lyase activity in DddP. This study sheds light on the catalytic mechanism and the divergent evolution of DddP, leading to a better understanding of marine bacterial DMSP catabolism and global DMS production.

Sourcing the smell of the seaside

Marine Sulfur Cycle Marine phytoplankton plays a critical role in the global sulfur cycle. Algae, for instance, are the main source of the aromatic compound dimethylsulfide (DMS) released from the oceans into the atmosphere. Alcolombri et al. identified the lyase enzyme responsible for DMS production in the bloom-forming marine phytoplankton Emiliania huxleyi (see the Perspective by Johnston). The presence of this gene in other globally distributed phytoplankton and corals suggests that it may serve as a reliable indicator of DMS production across diverse phyla. Because DMS gets oxidized to sulfur aerosols, which act as cloud condensation nuclei, this enzyme is a key global biogeochemical catalyst. Science , this issue p. [1466][1]; see also p. [1430][2] [1]: /lookup/doi/10.1126/science.aab1586 [2]: /lookup/doi/10.1126/science.aac5661

MARINE SULFUR CYCLE. Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle.

Algal blooms produce large amounts of dimethyl sulfide (DMS), a volatile with a diverse signaling role in marine food webs that is emitted to the atmosphere, where it can affect cloud formation. The algal enzymes responsible for forming DMS from dimethylsulfoniopropionate (DMSP) remain unidentified despite their critical role in the global sulfur cycle. We identified and characterized Alma1, a DMSP lyase from the bloom-forming algae Emiliania huxleyi. Alma1 is a tetrameric, redox-sensitive enzyme of the aspartate racemase superfamily. Recombinant Alma1 exhibits biochemical features identical to the DMSP lyase in E. huxleyi, and DMS released by various E. huxleyi isolates correlates with their Alma1 levels. Sequence homology searches suggest that Alma1 represents a gene family present in major, globally distributed phytoplankton taxa and in other marine organisms.

Enhancement of dimethylsulfide production by anoxic stress in natural seawater

AbstractDimethylsulfide (DMS) is produced by phytoplankton in the ocean and plays an important role in biogeochemical cycles and climate system of the Earth. Previous field studies reported a possible relationship between DMS enhancement and anoxic condition, although the governing processes are still to be identified. Here we show the first direct evidence for the enhancement of DMS production by natural planktonic assemblages caused by anoxic stress. Under the anoxic condition, DMS production was considerably enhanced and DMS bacterial consumption was inhibited, resulting in an eightfold higher rate of gross DMS production than that under the oxic condition. Our results demonstrated that anoxic stress is one of important “environmental factors” in the marine DMS dynamics, suggesting the possible global importance due to ubiquity of anoxic conditions in the coastal oceans. This process would become more important in the future due to expansion of coastal hypoxic and anoxic zones by global warming.

Biological production and spatial variation of dimethylated sulfur compounds and their relation with plankton in the North Yellow Sea

The concentrations of dimethylated sulfur compounds and chlorophyll a, as well as biological production and consumption rates of dimethylsulfide (DMS), were measured in the surface water of the North Yellow Sea (NYS, 37–40°N to 121–124°E) in winter 2007. Surface DMS, dissolved and particulate dimethylsulfoniopropionate (DMSPd and DMSPp) concentrations in the study area increased significantly from offshore to inshore sites, with the average values of 2.00, 4.52 and 7.21nM, respectively. The biological production and consumption rates of DMS were estimated, with the average values of 5.41 and 3.84nMd−1, respectively. The spatial variation of chlorophyll a was consistent with that of DMS and DMSP, as well as with that of DMS biological production, suggesting that phytoplankton biomass might play an important role in controlling the distribution of DMS and DMSP in the study area. According to the collective data of dimethylated sulfur compounds and DMS biological conversion in China Seas, the dimethylated sulfur compounds concentrations in the NYS during winter were a factor of 2 and 1.3 higher than those in the East China Sea and South China Sea, respectively. Less DMS (DMSP) in NYS was released in winter than that in spring and summer, which could be attributed to the shift in phytoplankton community composition dominated by diatoms to non-diatoms from winter to summer. Quantitative comparison analysis pointed to DMSPp rather than DMSPd as an important precursor of DMS in the surface water. The estimated sea-to-air fluxes of DMS using Liss and Merlivat (LM86), Wanninkhof (W92) and Nightingale (N2000) formulae were 2.72, 5.12 and 4.28μmolm−2d−1, respectively. In the surface water, the biological turnover time of DMS varied from 0.21 to 1.73d with an average of 0.83d, which was about 5.43-fold faster than the mean DMS sea–air turnover time (3.12d), implying that microbial consumption was a main sink of DMS in the surface water.

Spatial distribution of dimethylsulfide and dimethylsulfoniopropionate in the Yellow Sea and Bohai Sea during summer

The distributions of dimethylsulfide (DMS) and its precursor dimethylsulfoniopropionate (DMSP) in surface water of the Yellow Sea and the Bohai Sea were studied during June 2011. The mean concentrations and ranges of DMS, dissolved DMSP (DMSPd), and particulate DMSP (DMSPp) in surface waters were 6.85 (1.60-12.36), 7.25 (2.28-19.05) and 61.87 (6.28-224.01) nmol/L, respectively. There were strong correlations between DMSPp and chlorophyll a in the Bohai Sea and the North Yellow Sea, respectively, and concentrations of DMS and DMSP were high, with a relatively high proportion of dinoflagellates, in the region of the South Yellow Sea Cold Water Mass. Results show that phytoplankton biomass and species composition were important factors that controlled the distribution of DMS and DMSP. Complex environmental factors, including nutrients, transparency, and terrestrial runoff, might also influence the variability in DMS and DMSP. Biological production and consumption rates of DMS in the Bohai Sea were higher than those in the Yellow Sea. DMS production rates were closely correlated with DMSPd concentrations. DMS and DMSP exhibited obvious diel variations, with high concentrations occurring in the late afternoon (16:00-19:00) and low concentrations occurring during the night, implying that the intensity of solar radiation had a significant influence on these variations. Size distributions of chlorophyll a and DMSPp were also investigated and large nanoplankton (5-20 mu m), mainly diatoms, contributed significantly to chlorophyll a and DMSPp at most stations. The average sea-to-air flux of DMS in the study area was estimated to be 11.07 mu mol/(m(2)center dot d) during the summer.

Abundance and distribution of dimethylsulfoniopropionate degradation genes and the corresponding bacterial community structure at dimethyl sulfide hot spots in the tropical and subtropical pacific ocean.

Dimethylsulfoniopropionate (DMSP) is mainly produced by marine phytoplankton but is released into the microbial food web and degraded by marine bacteria to dimethyl sulfide (DMS) and other products. To reveal the abundance and distribution of bacterial DMSP degradation genes and the corresponding bacterial communities in relation to DMS and DMSP concentrations in seawater, we collected surface seawater samples from DMS hot spot sites during a cruise across the Pacific Ocean. We analyzed the genes encoding DMSP lyase (dddP) and DMSP demethylase (dmdA), which are responsible for the transformation of DMSP to DMS and DMSP assimilation, respectively. The averaged abundance (±standard deviation) of these DMSP degradation genes relative to that of the 16S rRNA genes was 33% ± 12%. The abundances of these genes showed large spatial variations. dddP genes showed more variation in abundances than dmdA genes. Multidimensional analysis based on the abundances of DMSP degradation genes and environmental factors revealed that the distribution pattern of these genes was influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibited significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possessed dmdA genes, were suggested to be the main potential DMSP consumers. The Roseobacter clade members possessing dddP genes in oligotrophic subtropical regions were possible DMS producers. These results suggest that DMSP degradation genes are abundant and widely distributed in the surface seawater and that the marine bacteria possessing these genes influence the degradation of DMSP and regulate the emissions of DMS in subtropical gyres of the Pacific Ocean.

A meta‐analysis of oceanic DMS and DMSP cycling processes: Disentangling the summer paradox

AbstractThe biogenic volatile compound dimethylsulfide (DMS) is produced in the ocean mainly from the ubiquitous phytoplankton osmolyte dimethylsulfoniopropionate (DMSP). In the upper mixed layer, DMS concentration and the daily averaged solar irradiance are roughly proportional across latitudes and seasons. This translates into a seasonal mismatch between DMS and phytoplankton biomass at low latitudes, termed the “DMS summer paradox,” which remains difficult to reproduce with biogeochemical models. Here we report on a global meta‐analysis of DMSP and DMS cycling processes and their relationship to environmental factors. We show that DMS seasonality reflects progressive changes in a short‐term dynamic equilibrium, set by the quotient between gross DMS production rates and the sum of biotic and abiotic DMS consumption rate constants. Gross DMS production is the principal driver of DMS seasonality, due to the synergistic increases toward summer in two of its underlying factors: phytoplankton DMSP content (linked to species succession) and short‐term community DMSP‐to‐DMS conversion yields (linked to physiological stress). We also show that particulate DMSP transformations (linked to grazing‐induced phytoplankton mortality) generally contribute a larger share of gross DMS production than dissolved‐phase DMSP metabolism. The summer paradox is amplified by a decrease in microbial DMS consumption rate constants toward summer. However, this effect is partially compensated by a concomitant increase in abiotic DMS loss rate constants. Besides seasonality, we identify consistent covariation between key sulfur cycling variables and trophic status. These findings should improve the modeling projections of the main natural source of climatically active atmospheric sulfur.

Under-ice microbial dimethylsulfoniopropionate metabolism during the melt period in the Canadian Arctic Archipelago

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 524:39-53 (2015) - DOI: https://doi.org/10.3354/meps11144 Under-ice microbial dimethylsulfoniopropionate metabolism during the melt period in the Canadian Arctic Archipelago Virginie Galindo1,7,*, Maurice Levasseur1, Michael Scarratt2, Christopher John Mundy3, Michel Gosselin4, Ronald P. Kiene5,6, Margaux Gourdal1, Martine Lizotte1 1Département de biologie, Québec-Océan, Université Laval, Québec, Québec G1V 0A6, Canada 2Maurice Lamontagne Institute, Fisheries and Oceans Canada, Mont-Joli, Québec G5H 3Z4, Canada 3Centre for Earth Observation Science (CEOS), Faculty of Environment, Earth and Resources, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada 4Institut des sciences de la mer de Rimouski (ISMER), Université du Québec à Rimouski, Rimouski, Québec G5L 3A1, Canada 5Department of Marine Sciences, University of South Alabama, Mobile, Alabama 36688, USA 6Dauphin Island Sea Lab, Dauphin Island, Alabama 36528, USA 7Present address: Centre for Earth Observation Science (CEOS), Faculty of Environment, Earth and Resources, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada *Corresponding author: virginie.galindo@gmail.com ABSTRACT: This study reports on the temporal variations in algal and bacterial metabolism of dissolved dimethylsulfoniopropionate (DMSPd) in Arctic ice-covered waters in response to the release of organic matter (OM) from the sea ice and the onset of under-ice phytoplankton growth. Sampling took place between 21 May and 21 June 2012 at a station located in Resolute Passage. A snow and ice melt event was accompanied by an important release of OM and total DMSP from the bottom ice to the water column. This input of OM coincided with increases in DMSPd and DMSPd loss rate constant at the ice-water interface and, 2 days later, with increases in DMSPd and bacterial dimethylsulfide (DMS) yields from DMSPd at 0.5 m under the ice. The different microbial responses suggest that DMSPd-rich brines were released first, followed by the release of sympagic algae due to ice melt. In both cases, the changes in DMSPd metabolism resulted in an increase in gross DMS production from 0.15 to 1.9 nmol l-1 d-1. The initiation of phytoplankton growth resulted in increases in bacterial abundance, DMSPd loss-rate constant and DMSP-sulfur assimilation. In contrast, DMS yield remained low during the onset of phytoplankton growth, indicating that bacteria used DMSP as a carbon and sulfur source. These results show that ice DMSPd can be rapidly (<1 d) and efficiently (up to 10%) converted into DMS by bacteria once released in surface water during melt events, a process that could contribute to DMS peaks measured at the ice edge. KEY WORDS: Arctic · Ice melt · Dimethylsulfoniopropionate · DMSP · Dimethylsulfide · DMS · Bacterial metabolism Full text in pdf format PreviousNextCite this article as: Galindo V, Levasseur M, Scarratt M, Mundy CJ and others (2015) Under-ice microbial dimethylsulfoniopropionate metabolism during the melt period in the Canadian Arctic Archipelago. Mar Ecol Prog Ser 524:39-53. https://doi.org/10.3354/meps11144 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 524. Online publication date: March 30, 2015 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2015 Inter-Research.

A novel pathway producing dimethylsulphide in bacteria is widespread in soil environments.

The volatile compound dimethylsulphide (DMS) is important in climate regulation, the sulphur cycle and signalling to higher organisms. Microbial catabolism of the marine osmolyte dimethylsulphoniopropionate (DMSP) is thought to be the major biological process generating DMS. Here we report the discovery and characterization of the first gene for DMSP-independent DMS production in any bacterium. This gene, mddA, encodes a methyltransferase that methylates methanethiol and generates DMS. MddA functions in many taxonomically diverse bacteria including sediment-dwelling pseudomonads, nitrogen-fixing bradyrhizobia and cyanobacteria, and mycobacteria including the pathogen Mycobacterium tuberculosis. The mddA gene is present in metagenomes from varied environments, being particularly abundant in soil environments, where it is predicted to occur in up to 76% of bacteria. This novel pathway may significantly contribute to global DMS emissions, especially in terrestrial environments and could represent a shift from the notion that DMSP is the only significant precursor of DMS.

The effects of iron limitation and cell density on prokaryotic metabolism and gene expression: Excerpts from Fusobacterium necrophorum strain 774 (sheep isolate)

Fusobacterium necrophorum is a Gram-negative obligate anaerobe associated with several diseases in humans and animals. Despite its increasing clinical significance, there is little or no data on the relationship between its metabolism and virulence. Previous studies have shown that bacteria grown under iron-limitation express immunogenic antigens similar to those generated in vivo. Thus, this paper describes the relationship between F. necrophorum subsp. necrophorum (Fnn) metabolism and the expression of the encoded putative virulence factors under iron-restricted conditions. At the midlog phase, iron limitation reduced Fnn growth but the cell density was dependent on the size of the inoculum. Preferential utilization of glucose-1-phosphate, d-mannitol and l-phenylalanine; production of 2-hydroxycaproic acid and termination of dimethyl sulphide production were major Fnn response-factors to iron limitation. Ultimately, iron restriction resulted in an increased ability of Fnn to metabolize diverse carbon sources and in the expression of stress-specific virulence factors. Iron starvation in low Fnn cell density was associated with the up-regulation of haemagglutinin (HA) and leukotoxin (lktA) genes (2.49 and 3.72 fold change respectively). However, Fnn encoded Haemolysin (Hly), yebN homologue (febN) and tonB homologue, were down-regulated (0.15, 0.79 and 0.33, fold changes respectively). Interestingly, cell density appeared to play a regulatory role in the final bacteria cell biomass, induction of a metabolic gene expression and the expression pattern virulence factors in Fnn suggesting the role of a cell density-associated regulatory factor. This report suggest that future studies on differential expression of bacterial genes under altered environmental condition(s) should consider testing the effect of cell concentrations as this is often neglected in such studies. In conclusion, iron restriction induces preferential utilization of carbon sources and altered metabolism in Fnn with associated changes in the expression pattern of the virulence factors.