Diel Cycle Research Articles

Diel dynamics of dissolved organic matter and heterotrophic prokaryotes reveal enhanced growth at the ocean's mesopelagic fish layer during daytime

Contrary to epipelagic waters, where biogeochemical processes closely follow the light and dark periods, little is known about diel cycles in the ocean's mesopelagic realm. Here, we monitored the dynamics of dissolved organic matter (DOM) and planktonic heterotrophic prokaryotes every 2 h for one day at 0 and 550 m (a depth occupied by vertically migrating fishes during light hours) in oligotrophic waters of the central Red Sea. We additionally performed predator-free seawater incubations of samples collected from the same site both at midnight and at noon. Comparable in situ variability in microbial biomass and dissolved organic carbon concentration suggests a diel supply of fresh DOM in both layers. The presence of fishes in the mesopelagic zone during daytime likely promoted a sustained, longer growth of larger prokaryotic cells. The specific growth rates were consistently higher in the noon experiments from both depths (surface: 0.34 vs. 0.18 d-1, mesopelagic: 0.16 vs. 0.09 d-1). Heterotrophic prokaryotes in the mesopelagic layer were also more efficient at converting extant DOM into new biomass. These results suggest that the ocean's twilight zone receives a consistent diurnal supply of labile DOM from the diel vertical migration of fishes, enabling an unexpectedly active community of heterotrophic prokaryotes.

Diel pCO2 fluctuations alter the molecular response of coral reef fishes to ocean acidification conditions.

Environmental partial pressure of CO2 (pCO2 ) variation can modify the responses of marine organisms to ocean acidification, yet the underlying mechanisms for this effect remain unclear. On coral reefs, environmental pCO2 fluctuates on a regular day-night cycle. Effects of future ocean acidification on coral reef fishes might therefore depend on their response to this diel cycle of pCO2 . To evaluate the effects on the brain molecular response, we exposed two common reef fishes (Acanthochromis polyacanthus and Amphiprion percula) to two projected future pCO2 levels (750 and 1,000µatm) under both stable and diel fluctuating conditions. We found a common signature to stable elevated pCO2 for both species, which included the downregulation of immediate early genes, indicating lower brain activity. The transcriptional programme was more strongly affected by higher average pCO2 in a stable treatment than for fluctuating treatments, but the largest difference in molecular response was between stable and fluctuating pCO2 treatments. This indicates that a response to a change in environmental pCO2 conditions is different for organisms living in a fluctuating than in stable environments. This differential regulation was related to steroid hormones and circadian rhythm (CR). Both species exhibited a marked difference in the expression of CR genes among pCO2 treatments, possibly accommodating a more flexible adaptive approach in the response to environmental changes. Our results suggest that environmental pCO2 fluctuations might enable reef fishes to phase-shift their clocks and anticipate pCO2 changes, thereby avoiding impairments and more successfully adjust to ocean acidification conditions.

Brief Episodes of Nocturnal Hypoxia and Acidification Reduce Survival of Economically Important Blue Crab (Callinectes sapidus) Larvae

Many shallow coastal systems experience diel fluctuations in dissolved oxygen (DO) and pH that can intensify throughout the summer season and expose estuarine organisms to repeated episodes of coastal hypoxia and acidification. In temperate regions, larval release of the economically important blue crab Callinectes sapidus occurs in the summer, and while the earliest stage (zoea I) larvae are susceptible to persistent low DO and low pH conditions, their sensitivity to diel fluctuations is unknown. Here, a series of short-term (≤96 h) experiments were conducted to investigate the survival of C. sapidus zoea I larvae exposed to a range of diel cycling hypoxic and acidified conditions and durations. Two experiments comparing a diel cycling DO/pH treatment (fluctuating from ∼30% air saturation to ∼103% averaging ∼66%/and from pH ∼7.26 to ∼7.80 averaging ∼7.53) to a static low DO/pH treatment (∼43%/∼7.35), a static moderate DO/pH treatment (∼68%/∼7.59), and a static control treatment (∼106%/∼7.94) indicated that survival in the diel cycling treatment was significantly lower than the moderate treatment (p < 0.05) by 75 and 48% over 96 and 48 h, respectively, despite comparable mean experimental DO/pH values. Three other experiments aimed at identifying the effective minimum duration of low DO/low pH to significantly depress larval survival under diel cycling conditions revealed that 8 h of low DO/low pH (∼28%/∼7.43) over a 24-h diel cycle consistently decreased survival (p < 0.05) relative to control conditions by at least 55% regardless of experimental duration (72-, 48-, and 24-h experiments). An increase in DO beyond saturation to supersaturation (160%) and pH beyond normocapnic to highly basified (8.34) conditions during the day phase of the diel cycle did not improve survival of larvae exposed to nocturnal hypoxia and acidification. Collectively, these experiments demonstrate that diel cycling does not provide newly hatched C. sapidus larvae a temporal refuge capable of ameliorating low DO/pH stress, but rather is more lethal than chronic exposure to comparable average DO/pH conditions. Given that larvae exposed to a single nocturnal episode of moderate hypoxia and acidification experience significantly reduced survival, such occurrences may depress larval recruitment.

Extension of a gaseous dry deposition algorithm to oxidized volatile organic compounds and hydrogen cyanide for application in chemistry transport models.

The dry deposition process refers to flux loss of an atmospheric pollutant due to uptake of the pollutant by the Earth’s surfaces, including vegetation, underlying soil, and any other surface types. In chemistry transport models (CTMs), the dry deposition flux of a chemical species is typically calculated as the product of its surface layer concentration and its dry deposition velocity (Vd); the latter is a variable that needs to be highly empirically parameterized due to too many meteorological, biological, and chemical factors affecting this process. The gaseous dry deposition scheme of Zhang et al. (2003) parameterizes Vd for 31 inorganic and organic gaseous species. The present study extends the scheme of Zhang et al. (2003) to include an additional 12 oxidized volatile organic compounds (oVOCs) and hydrogen cyanide (HCN), while keeping the original model structure and formulas, to meet the demand of CTMs with increasing complexity. Model parameters for these additional chemical species are empirically chosen based on their physicochemical properties, namely the effective Henry’s law constants and oxidizing capacities. Modeled Vd values are compared against field flux measurements over a mixed forest in the southeastern US during June 2013. The model captures the basic features of the diel cycles of the observed Vd. Modeled Vd values are comparable to the measurements for most of the oVOCs at night. However, modeled Vd values are mostly around 1 cm s−1 during daytime, which is much smaller than the observed daytime maxima of 2–5 cm s−1. Analysis of the individual resistance terms and uptake pathways suggests that flux divergence due to fast atmospheric chemical reactions near the canopy was likely the main cause of the large model–measurement discrepancies during daytime. The extended dry deposition scheme likely provides conservative Vd values for many oVOCs. While higher Vd values and bidirectional fluxes can be simulated by coupling key atmospheric chemical processes into the dry deposition scheme, we suggest that more experimental evidence of high oVOC Vd values at additional sites is required to confirm the broader applicability of the high values studied here. The underlying processes leading to high measured oVOC Vd values require further investigation.

Linking personality and health to use of space in the gray partridge: perspectives for management

Behavioral adjustments are of critical importance for the survival of animals when exposed to risk and resource variations in their environment. Moving to safer habitats allows prey to reduce the risk of mortality triggered by predation. This response has been well studied at the population level to assist in identifying key habitat components for wildlife conservation. However, while individuals may differ in their response to risk and thus in their survival expectancy, the determinants of individual adjustments in space and habitat use are largely unknown in management and conservation studies. Using GPS monitoring, we investigated the relationship between individual traits (morphometry, personality, health status) and adjustments in the use of space relative to risky features (hedgerows, roads/tracks, woodlands, built-up areas) with regard to predation risk. We used the gray partridge (Perdix perdix) as a study model (captive-reared birds released into the farmlands). During the diel cycle, predation risk mainly occurs by carnivores at night, whereas human hunting pressure occurs during the day. We found that personality and health status had an effect on adjustments in the use of space as response to risky features. At night, when carnivore activity is expected to be high, bolder individuals were farther from hedgerows relative to the day. Similarly, individuals in good health were located farther from hedgerows, roads/tracks, and woodland at night relative to the day. We discuss the need for better consideration of individual traits in management and conservation programs, with a particular focus on recovery programs that rely on translocation of captive-reared individuals.

High-Frequency Variability of the Surface Ocean Properties Off Central Chile During the Upwelling Season

The ocean off south-central Chile is subject to seasonal upwelling whose intensity is mainly controlled by the latitudinal migration of the southeast Pacific subtropical anticyclone. During austral spring and summer, the mean flow is equatorward favoring coastal upwelling, but periods of strong southerly winds are intermixed with periods of relaxed southerlies or weak northerly winds (downwelling favorable). This sub-seasonal, high-frequency variability of the coastal winds results in pronounced changes in oceanographic conditions and air-sea heat and gas exchanges, whose quantitative description has been limited by the lack of in-situ monitoring. In this study, high frequency fluctuations of meteorological, oceanographic and biogeochemical near surface variables were analyzed during two consecutive upwelling seasons (2016–17 and 2017–18) using observations from a coastal buoy located in the continental shelf off south-central Chile (36.4°S, 73°W), ∼10 km off the coast. The radiative-driven diel cycle is noticeable in meteorological variables but less pronounced for oceanographic and biogeochemical variables [ocean temperature, nitrate (NO3−), partial pressure of carbon dioxide (pCO2sea), pH, dissolved oxygen (DO)]. Fluorescence, as a proxy of chlorophyll-a, showed diel variations more controlled by biological processes. In the synoptic scale, 23 active upwelling events (strong southerlies, lasting between 2 and 15 days, 6 days in average) were identified, alternated with periods of relaxed southerlies of shorter duration (4.5 days in average). Upwelling events were related to the development of an atmospheric low-level coastal jet in response to an intense along-shore pressure gradient. Physical and biogeochemical surface seawater properties responded to upwelling favorable wind stress with approximately a 12-h lag. During upwelling events, SST, DO and pH decrease, while NO3−, pCO2sea, and air-sea fluxes increases. During the relaxed southerly wind periods, opposite tendencies were observed. The fluorescence response to wind variations is complex and diverse, but in many cases there was a reduction in the phytoplankton biomass during the upwelling events followed by higher values during wind relaxations. The sub-seasonal variability of the coastal ocean characterized here is important for biogeochemical and productivity studies.

Elevated pCO2 enhances under light but reduces in darkness the growth rate of a diatom, with implications for the fate of phytoplankton below the photic zone

AbstractExperimentally elevated pCO2 and the associated pH drop are known to differentially affect many aspects of the physiology of diatoms under different environmental conditions or in different regions. However, contrasting responses to elevated pCO2 in the dark and light periods of a diel cycle have not been documented. By growing the model diatom Phaeodactylum tricornutum under 3 light levels and 2 different CO2 concentrations, we found that the elevated pCO2/pH drop projected for future ocean acidification reduced the diatom's growth rate by 8–25% during the night period but increased it by up to 9–21% in the light period, resulting in insignificant changes in growth over the diel cycle under the three different light levels. The elevated pCO2 increased the respiration rates irrespective of growth light levels and light or dark periods and enhanced its photosynthetic performance during daytime. With prolonged exposure to complete darkness, simulating the sinking process in the dark zones of the ocean, the growth rates decreased faster under elevated pCO2, along with a faster decline in quantum yield and cell size. Our results suggest that elevated pCO2 enhances the diatom's respiratory energy supplies to cope with acidic stress during the night period but enhances its death rate when the cells sink to dark regions of the oceans below the photic zone, with implications for a possible acidification‐induced reduction in vertical transport of organic carbon.

Diel cycle impacts on the chemical and light absorption properties of organic carbon aerosol from wildfires in the western United States

Abstract. Organic aerosol (OA) emissions from biomass burning have been the subject of intense research in recent years, involving a combination of field campaigns and laboratory studies. These efforts have aimed at improving our limited understanding of the diverse processes and pathways involved in the atmospheric processing and evolution of OA properties, culminating in their accurate parameterizations in climate and chemical transport models. To bring closure between laboratory and field studies, wildfire plumes in the western United States were sampled and characterized for their chemical and optical properties during the ground-based segment of the 2019 Fire Influence on Regional to Global Environments and Air Quality (FIREX-AQ) field campaign. Using a custom-developed multiwavelength integrated photoacoustic-nephelometer spectrometer in conjunction with a suite of instruments, including an oxidation flow reactor equipped to generate hydroxyl (OH⚫) or nitrate (NO3⚫) radicals to mimic daytime or nighttime oxidative aging processes, we investigated the effects of multiple equivalent hours of OH⚫ or NO3⚫ exposure on the chemical composition and mass absorption cross-sections (MAC(λ)) at 488 and 561 nm of OA emitted from wildfires in Arizona and Oregon. We found that OH⚫ exposure induced a slight initial increase in absorption corresponding to short timescales; however, at longer timescales, the wavelength-dependent MAC(λ) decreased by a factor of 0.72 ± 0.08, consistent with previous laboratory studies and reports of photobleaching. On the other hand, NO3⚫ exposure increased MAC(λ) by a factor of up to 1.69 ± 0.38. We also noted some sensitivity of aerosol aging to different fire conditions between Arizona and Oregon. The MAC(λ) enhancement following NO3⚫ exposure was found to correlate with an enhancement in CHO1N and CHOgt1N ion families measured by an Aerodyne aerosol mass spectrometer.

Rapid and reversible modulation of blood haemoglobin content during diel cycles of hypoxia in killifish (Fundulus heteroclitus)

We investigated whether fish can make dynamic haematological adjustments to support aerobic metabolism during repeated cycles of hypoxia-reoxygenation. Killifish were acclimated to normoxia, constant hypoxia (2 kPa O2), or intermittent cycles of nocturnal hypoxia (12 h of normoxia: 12 h of 2 kPa O2 hypoxia) for 28 days. Normoxia-acclimated fish were sampled in the daytime in normoxia and after exposure to a single bout of nocturnal hypoxia. Each hypoxia acclimation group were sampled at the PO2 experienced during acclimation during both the day and night. All acclimation groups had increased blood haemoglobin content and haematocrit and reduced spleen mass during nocturnal hypoxia compared to normoxic controls. Blood haemoglobin content was negatively correlated with spleen mass at both the individual and group level. Fish acclimated to intermittent hypoxia rapidly reversed these changes during diurnal reoxygenation. The concentrations of haemoglobin, ATP, and GTP within erythrocytes did not vary substantially between groups. We also measured resting O2 consumption rate (MO2) and maximum MO2 (induced by an exhaustive chase) in hypoxia in each acclimation group. Fish acclimated to intermittent hypoxia maintained higher resting MO2 than other groups in hypoxia, comparable to the resting MO2 of normoxia-acclimated controls measured in normoxia. Differences in resting MO2 in hypoxia did not result from variation in O2 transport capacity, because maximal MO2 in hypoxia always exceeded resting MO2. Therefore, reversible modulation of blood haemoglobin content along with metabolic adjustments help killifish cope with intermittent cycles of hypoxia in the estuarine environment.

Cloud shadows drive vertical migrations of deep-dwelling marine life.

Many zooplankton and fishes vertically migrate on a diel cycle to avoid predation, moving from their daytime residence in darker, deep waters to prey-rich surface waters to feed at dusk and returning to depth before dawn. Vertical migrations also occur in response to other processes that modify local light intensity, such as storms, eclipses, and full moons. We observed rapid, high-frequency migrations, spanning up to 60 m, of a diel vertically migrating acoustic scattering layer with a daytime depth of 300 m in the subpolar Northeastern Pacific Ocean. The depth of the layer was significantly correlated, with an ∼5-min lag, to cloud-driven variability in surface photosynthetically available radiation. A model of isolume-following swimming behavior reproduces the observed layer depth and suggests that the high-frequency migration is a phototactic response to absolute light level. Overall, the cumulative distance traveled per day in response to clouds was at least 36% of the round-trip diel migration distance. This previously undescribed phenomenon has implications for the metabolic requirements of migrating animals while at depth and highlights the powerful evolutionary adaptation for visual predator avoidance.

Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle.

SNF1-related Kinase 1 (SnRK1) is an evolutionarily conserved protein kinase with key functions in energy management during stress responses in plants. To address a potential role of SnRK1 under favorable conditions, we performed a metabolomic and transcriptomic characterization of rosettes of 20-d-old Arabidopsis (Arabidopsis thaliana) plants of SnRK1 gain- and loss-of-function mutants during the regular diel cycle. Our results show that SnRK1 manipulation alters the sucrose and trehalose 6-phosphate (Tre6P) relationship, influencing how the sucrose content is translated into Tre6P accumulation and modulating the flux of carbon to the tricarboxylic acid cycle downstream of Tre6P signaling. On the other hand, daily cycles of Tre6P accumulation were accompanied by changes in SnRK1 signaling, leading to a maximum in the expression of SnRK1-induced genes at the end of the night, when Tre6P levels are lowest, and to a minimum at the end of the day, when Tre6P levels peak. The expression of SnRK1-induced genes was strongly reduced by transient Tre6P accumulation in an inducible Tre6P synthase (otsA) line, further suggesting the involvement of Tre6P in the diel oscillations in SnRK1 signaling. Transcriptional profiling of wild-type plants and SnRK1 mutants also uncovered defects that are suggestive of an iron sufficiency response and of a matching induction of sulfur acquisition and assimilation when SnRK1 is depleted. In conclusion, under favorable growth conditions, SnRK1 plays a role in sucrose homeostasis and transcriptome remodeling in autotrophic tissues and its activity is influenced by diel fluctuations in Tre6P levels.

Diurnal and Seasonal Variations in the Phase State of Secondary Organic Aerosol Material over the Contiguous US Simulated in CMAQ

Secondary organic aerosol (SOA) accounts for a substantial portion of atmospheric particulate matter. Phase state plays an important role in the formation and evolution of SOA, while current air quality models usually assume that SOA particles are homogeneous and well-mixed liquids. In this study, we simulate glass transition temperature (Tg) and particle viscosity of SOA based on organic molecular composition over the contiguous US in 2016 using the Community Multiscale Air Quality (CMAQ) model. Simulations show that oligomers from anthropogenic and biogenic SOA and acid-catalyzed isoprene SOA are large contributors to Tg of dry SOA, and the dominant species that regulates the dry Tg variation is dependent on location and season. At the surface, the Tg of dry SOA is higher in the western than in the eastern US, which is due to higher mass fractions of accretion products in the western US. Taking into account the water uptake by SOA, the estimated SOA viscosity shows a prominent geospatial gradient, which is nearly a mirror image of relative humidity. SOA viscosity exhibits a strong diel cycle, and the phase state tends to be more viscous in daytime. The seasonal variations in SOA viscosity are substantially smaller than the diurnal variations. Simulations for four diverse field sites show that Tg and SOA viscosity exhibit significant vertical variations that increase with the altitude. SOA in winter undergoes glass transition at lower altitude (∼3 km) than the other three seasons, and SOA occurs as a non-liquid phase at lower altitude at night than during the daytime. This suggests that chemical transport models may need to consider the bulk diffusion limitations in partitioning into viscous SOA in dry western areas of US and aloft in the humid eastern US as well as dry periods during the day to accurately predict SOA formation, size distribution dynamics, and subsequent impacts.

Effect of Diel Cycling Temperature, Relative Humidity, and Synthetic Route on the Surface Morphology and Hydrolysis of α-U3O8.

The speciation and morphological changes of α-U3O8 following aging under diel cycling temperature and relative humidity (RH) have been examined. This work advances the knowledge of U-oxide hydration as a result of synthetic route and environmental conditions, ultimately giving novel insight into nuclear material provenance. α-U3O8 was synthesized via the washed uranyl peroxide (UO4) and ammonium uranyl carbonate (AUC) synthetic routes to produce unaged starting materials with different morphologies. α-U3O8 from UO4 is comprised of subrounded particles, while α-U3O8 from AUC contains blocky, porous particles approximately an order of magnitude larger than particles from UO4. For aging, a humidity chamber was programmed for continuous daily cycles of 12 “high” hours of 45 °C and 90% RH, and 12 “low” hours of 25 °C and 20% RH. Samples were analyzed at varying intervals of 14, 24, 36, 43, and 54 days. At each aging interval, crystallographic changes were measured via powder X-ray diffraction coupled with whole pattern fitting for quantitative analysis. Morphologic effects were studied via scanning electron microscopy and 12-way classification via machine learning. While all samples were found to have distinguishing morphologic characteristics (93.2% classification accuracy), α-U3O8 from UO4 had more apparent change with increasing aging time. Nonetheless, α-U3O8 from AUC was found to hydrate more quickly than α-U3O8 from UO4, which can likely be attributed to its larger surface area and porous starting material morphology.

Methane in the Danube Delta: the importance of spatial patterns and diel cycles for atmospheric emission estimates

Abstract. Methane (CH4) is one of the substantial greenhouse gases in our atmosphere, and its concentration has increased by ∼ 4 % over the last decade. Although sources driving these increases are not well constrained, one potential contribution comes from wetlands, which are usually intertwined with rivers, channels and lakes, creating a considerable need to acquire higher-resolution data to facilitate modelling and predictions. Here we took a fully contained sensor set-up to obtain measurements of CH4, O2 and auxiliary parameters, installed on a houseboat for accessibility, to assess and analyse surface water concentrations within the Danube Delta, Romania. During three expeditions in different seasons, we transected a ∼ 400 km route with concentration mapping and two additional stations for monitoring diel cycles. Overall, the delta was a source for CH4 throughout all seasons, with concentrations ranging between 0.113–15.6 µmol L−1. Calculated diffusive CH4 fluxes for the overall delta yielded an average of 49 ± 61 µmol m−2 h−1, corresponding to an extrapolated annual flux of 0.43 ± 0.53 mol m−2 yr−1. The dataset was split into three different subsystems – lakes, rivers and channels – with channels showing the highest variability. We found overlapping CH4 concentrations throughout each subsystem, with large inflows coming from reed beds and channels into the lakes. Seasonal variability and water flow direction also influenced the overall dynamics in each region. We found large to extreme diel cycles in both the lakes and channels, with concentrations varying by an order of magnitude between these two systems. The lake diel cycle showed a clear linear trend with an O2:CH4 molar ratio of -50:1 during the phase of nocturnal convection, with the two water stratified bodies mixing during the night, suggesting daily vertical stratification allowing for macrophytes to create a temporal oxycline due to a lack of light and movement between the stems as previously suggested, and potentially incurring an uncertainty range of a factor of 4.5. Our data illustrate the importance of high-resolution spatio-temporal data collection throughout the entire delta and the increased need for diel cycles in different habitats to improve the concentration and emission estimates from wetland systems.

Extreme altitude changes between night and day during marathon flights of great snipes

Several factors affect the flight altitude of migratory birds, such as topography, ambient temperature, wind conditions, air humidity, predation avoidance, landmark orientation, and avoiding over-heating from direct sunlight.1-6 Recent tracking of migratory birds over long distances has shown that migrants change flight altitude more commonly and dramatically than previously thought.4-8 The reasons behind these altitude changes are not well understood. In their seasonal migrations between Sweden and sub-Saharan Africa, great snipes Gallinago media make non-stop flights of 4,000-7,000km, lasting 60-90 h.9,10 Activity and air pressure data from multisensor dataloggers showed that great snipes repeatedly changed altitudes around dawn and dusk, between average cruising heights about 2,000m (above sea level) at night and around 4,000m during daytime. Frequency and autocorrelation analyses corroborated a conspicuous diel cycle in flight altitude. Most birds regularly flew at 6,000m and one bird reached 8,700 m, possibly the highest altitude ever recorded for an identified migrating bird. The diel altitude changes took place independently of climate zone, topography, and habitat overflown. Ambient temperature, wind condition, and humidity have no important diel variation at the high altitudes chosen by great snipes. Instead, improved view for orientation by landmarks, predator avoidance, and not least, seeking cold altitudes at day to counteract heating from direct sunlight are the most plausible explanations for the diel altitude cycle. Together with similar recent findings for a small songbird,6 the great snipes' altitudinal performance sheds new light on the complexity and challenges of migratory flights.

Pigment modulation in response to irradiance intensity in the fast-growing alga Picochlorum celeri

Picochlorum celeri has among the fastest photoautotrophic growth rates (~2 h doubling time in optimal conditions) reported to date for a marine alga. This study comprehensively analyzes the levels of Picochlorum celeri photosynthetic pigments, which can reach up to ~13% of the total particulate organic carbon (POC) under light-limiting conditions. The main Picochlorum celeri pigments identified include: chlorophyll a, chlorophyll b, lutein, β-carotene, canthaxanthin, violaxanthin, neoxanthin, zeaxanthin and antheraxanthin. The ketocarotenoid canthaxanthin can accumulate up to 120 mg L−1 in Picochlorum celeri liquid culture; ~12% of it was found in an extracellular polysaccharide matrix. Using a solar-simulating automated photobioreactor, we monitor the photoacclimation of cultures maintained in unshaded conditions (<0.5 μg mL−1 of total chlorophyll) through transitions from high irradiance (1000 μmoles photosynthetically active radiation (PAR) m−2 s−1) to low irradiance (60 μmoles PAR m−2 s−1), and conversely from low to high irradiance. Canthaxanthin and zeaxanthin accumulation are among the most rapid modulation responses when cultures are shifted from low to high irradiance. The violaxanthin, antherazanthin, and zeaxanthin (VAZ) pool is ~3-fold higher in high-light cultures, suggesting that the VAZ cycle combined with a dramatic reduction in chlorophyll levels are among the major mechanisms used in Picochlorum celeri to efficiently acclimate to high-irradiance levels. Responsive pigment modulation was also observed in denser cultures (~0.65 g L−1) grown under a diel cycle (pond-mimicking conditions). This research provides unique insights into the dynamics of pigment modulation and photoacclimation in response to changing irradiance in a biotechnologically promising alga and will inform future pigment engineering strategies to further improve light capture and biomass accumulation.

Threading the needle: How humans influence predator–prey spatiotemporal interactions in a multiple‐predator system

Perceived predation risk and the resulting antipredator behavior varies across space, time, and predator identity. Communities with multiple predators that interact and differ in their use of space, time of activity, and hunting mode create a complex landscape for prey to avoid predation. Anthropogenic presence and disturbance have the potential to shift interactions among predators and prey and the where and when encounters occur. We examined how white-tailed deer (Odocoileus virginianus) fawn spatiotemporal antipredator behavior differed along an anthropogenic disturbance gradient that had black bears (Ursus americanus), coyotes (Canis latrans), bobcats (Lynx rufus), and humans present. We quantified 1) spatial co-occurrence in species distributions, 2) temporal overlap across the diel cycle, and 3) spatiotemporal associations between humans, bears, coyotes, bobcats, adult male deer, and fawns. We also examined how deer vigilance behavior changed across the anthropogenic disturbance gradient and survey duration. Anthropogenic disturbance influenced spatiotemporal co-occurrence across multiple scales, often increasing spatiotemporal overlap among species. In general, species' spatial co-occurrence was neutral or positive in anthropogenically disturbed environments. Bears and fawns, coyotes and adult male deer, and bobcats and fawns all had higher temporal overlap in the agriculture-development matrix sites. In addition, factors that influenced deer vigilance (e.g., distance to forest edge and predator relative abundance) in the agriculture-development matrix sites did not in the forest matrix site. By taking into account the different antipredator behaviors that can be detected and the different scales these behaviors might occur, we were able to gain a more comprehensive picture of how humans reduce available niche space for wildlife, creating the neutral and positive spatiotemporal associations between species that studies have been seeing in more disturbed areas.

Niche partitioning between sympatric wild canids: the case of the golden jackal (Canis aureus) and the red fox (Vulpes vulpes) in north-eastern Italy

BackgroundTwo coexisting species with similar ecological requirements avoid or reduce competition by changing the extent of their use of a given resource. Numerous coexistence mechanisms have been proposed, but species interactions can also be aggressive; thus, generally a subordinate species modifies its realized niche to limit the probability of direct encounters with the dominant species. We studied niche partitioning between two sympatric wild canids in north-eastern Italy: the golden jackal and the red fox, which, based on competition theories, have a high potential for competition. We considered four main niche dimensions: space, habitat, time, and diet.ResultsWe investigated three study areas monitoring target species populations from March 2017 to November 2018 using non-invasive monitoring techniques. Red fox presence was ascertained in every study area, while golden jackal presence was not ascertained in one study area, where we collected data regarding wolf presence. Considering the two target species, we observed partial diet partitioning based on prey size, with the golden jackal mainly feeding on wild ungulates and the red fox mainly feeding on small mammals. The two canids had an extensive temporal overlap along the diel cycle, having both predominant crepuscular and nocturnal activity patterns, but marked spatial partitioning and differential use of habitats. The golden jackal proved to be specialist concerning the habitat dimension, while the red fox resulted completely generalist: the former selected less human-modified habitats and avoided intensively cultivated lands, while the latter was present in all habitats, including intensively cultivated lands.ConclusionsThe observed partitioning might be due partially to some ecological adaptations (e.g. specialist vs. generalist use of resources) and specific behaviours (e.g. cooperative vs. solitary hunting) and partially to the avoidance response of the red fox aimed at reducing the probability of direct encounters with the golden jackal.

Diel cycle in a farmland bird is shaped by contrasting predation and human pressures

Abstract In human-dominated landscapes, human disturbances may contrast (spatially and/or temporally) with risk imposed by non-human predators. However, how prey adjust behaviour to minimize risk from multiple threats remains unclear. In Central-Western France, we investigated patterns of activity, space and habitat use, and causes of variations during the diel cycle of the grey partridge (captive-reared, released), a farmland bird facing multiple risks (nocturnal predation, diurnal hunting pressure). We also investigated influence of individual space use, relative to risk-related features on the fate of birds. Birds adjusted their behaviours in ways consistent with the reduction of risk from nocturnal carnivores at night and hunters during daytime. We recorded bimodal crepuscular activity, likely explained by commuting movements between spatially-separated diurnal and nocturnal sites composed of different habitats: selection of open terrains and avoidance of predator reservoirs at night vs. use of high-vegetation cover during daytime. We observed space use differences between surviving, hunted and predated birds. Predation and hunting activities act as contrasting pressures, selecting birds based on their spatial behaviour, which has likely shaped diel adjustments at the population level. An improved consideration of temporal variation in environmental pressures would help to reliably address factors constraining populations, so increasing wildlife management efficiency.

Sharks surf the slope: Current updrafts reduce energy expenditure for aggregating marine predators.

An animal's energy landscape considers the power requirements associated with residing in or moving through habitats. Within marine environments, these landscapes can be dynamic as water currents will influence animal power requirements and can change rapidly over diel and tidal cycles. In channels and along slopes with strong currents, updraft zones may reduce energy expenditure of negatively buoyant fishes that are also obligate swimmers. Despite marine predators often residing within high-current area, no study has investigated the potential role of the energetic landscape in driving such habitat selectivity. Over 500 grey reef sharks Carcharhinus amblyrhynchos reside in the southern channel of Fakarava Atoll, French Polynesia. We used diver observations, acoustic telemetry and biologging to show that sharks use regions of predicted updrafts and switch their core area of space use based on tidal state (incoming versus outgoing). During incoming tides, sharks form tight groups and display shuttling behaviour (moving to the front of the group and letting the current move them to the back) to maintain themselves in these potential updraft zones. During outgoing tides, group dispersion increases, swimming depths decrease and shuttling behaviours cease. These changes are likely due to shifts in the nature and location of the updraft zones, as well as turbulence during outgoing tides. Using a biomechanical model, we estimate that routine metabolic rates for sharks may be reduced by 10%-15% when in updraft zones. Grey reef sharks save energy using predicted updraft zones in channels and 'surfing the slope'. Analogous to birds using wind-driven updraft zones, negatively buoyant marine animals may use current-induced updraft zones to reduce energy expenditure. Updrafts should be incorporated into dynamic energy landscapes and may partially explain the distribution, behaviour and potentially abundance of marine predators.