Development Of Harmful Algal Blooms Research Articles

Logistics Network Management of Livestock Waste for Spatiotemporal Control of Nutrient Pollution in Water Bodies.

Nutrient pollution is a widespread water quality problem, which originates from excess nutrient runoff from agricultural land, improperly managed farming operations, and point sources such as wastewater treatment plants. Some nutrient pollution impacts include harmful algal blooms (HABs), hypoxia, and eutrophication. HABs are major environmental events that cause severe health threats and economic losses (e.g., tourism, real estate, commercial fishing). A dimension of the nutrient pollution problem that has not received much attention is that this interacts with organic waste management practices. As a result, it is important to connect the time and location of point and nonpoint nutrient source releases, nutrient soil content, spatial layout, and hydrology of agricultural lands with the transport of nutrients to water bodies and their impacts on aquatic ecosystems. In this work, we show how nutrient concentration in water bodies and other spatiotemporal factors are related to HAB development and how logistics management of livestock waste can be used to conduct space-time management of nutrient pollution. A case study for the Upper Yahara Watershed in the State of Wisconsin (U.S.) is employed to demonstrate the practicability of the modeling framework. Our framework reveals that logistics network management for waste and nutrients can reduce the incidence rates of HABs, but reducing it to nonharmful levels would require long-term efforts such as installing nutrient recovery technologies, coordinating manure storage and application, and deploying management incentive plans.

Physical flow effects can dictate plankton population dynamics.

Oceanic flows do not necessarily mix planktonic species. Differences in individual organisms’ physical and hydrodynamic properties can cause changes in drift normal to the mean flow, leading to segregation between species. This physically driven heterogeneity may have important consequences at the scale of population dynamics. Here, we describe how one form of physical forcing, circulating flows with different inertia effects between phytoplankton and zooplankton, can dramatically alter excitable plankton bloom dynamics. This may impact our understanding of the initiation and development of harmful algal blooms (HABs), which have significant negative ecological and socio-economic consequences. We study this system in detail, providing spatio-temporal dynamics for particular scenarios and summarizing large-scale behaviour via spatially averaged bifurcation diagrams. The key message is that, across a large range of parameter values, fluid flow can induce plankton blooms and mean-field population dynamics that are distinct from those predicted for well-mixed systems. The implications for oceanic population dynamic studies are manifest: we argue that the formation of HABs will depend strongly on the physical and biological state of the ecosystem, and that local increases in zooplankton heterogeneity are likely to precede phytoplankton blooms.

Meta‐analysis reveals enhanced growth of marine harmful algae from temperate regions with warming and elevated CO2 levels

Elevated pCO2 and warming may promote algal growth and toxin production, and thereby possibly support the proliferation and toxicity of harmful algal blooms (HABs). Here, we tested whether empirical data support this hypothesis using a meta‐analytic approach and investigated the responses of growth rate and toxin content or toxicity of numerous marine and estuarine HAB species to elevated pCO2 and warming. Most of the available data on HAB responses towards the two tested climate change variables concern dinoflagellates, as many members of this phytoplankton group are known to cause HAB outbreaks. Toxin content and toxicity did not reveal a consistent response towards both tested climate change variables, while growth rate increased consistently with elevated pCO2. Warming also led to higher growth rates, but only for species isolated at higher latitudes. The observed gradient in temperature growth responses shows the potential for enhanced development of HABs at higher latitudes. Increases in growth rates with more CO2 may present an additional competitive advantage for HAB species, particularly as CO2 was not shown to enhance growth rate of other non‐HAB phytoplankton species. However, this may also be related to the difference in representation of dinoflagellate and diatom species in the respective HAB and non‐HAB phytoplankton groups. Since the proliferation of HAB species may strongly depend on their growth rates, our results warn for a greater potential of dinoflagellate HAB development in future coastal waters, particularly in temperate regions.

Harmful phytoplankton diversity and dynamics in an upwelling region (Sagres, SW Portugal) revealed by ribosomal RNA microarray combined with microscopy

The study region in Sagres, SW Portugal, is subject to natural eutrophication of coastal waters by wind-driven upwelling, which stimulates high primary productivity facilitating the recent economic expansion of bivalve aquaculture in the region. However, this economic activity is threatened by harmful algal blooms (HAB) caused by the diatoms Pseudo-nitzschia spp., Dinophysis spp. and other HAB dinoflagellates, all of which can produce toxins, that can induce Amnesic Shellfish Poisoning (ASP), Diarrhetic Shellfish Poisoning (DSP) and Paralytic Shellfish Poisoning (PSP). This study couples traditional microscopy with 18S/28S rRNA microarray to improve the detection of HAB species and investigates the relation between HAB and the specific oceanographic conditions in the region. Good agreement was obtained between microscopy and microarray data for diatoms of genus Pseudo-nitzschia and dinoflagellates Dinophysis spp., Gymnodinium catenatum and raphidophyte Heterosigma akashiwo, with less effective results for Prorocentrum. Microarray provided detection of flagellates Prymnesium spp., Pseudochattonella spp., Chloromorum toxicum and the important HAB dinoflagellates of the genera Alexandrium and Azadinium, with the latter being one of the first records from the study region. Seasonality and upwelling induced by northerly winds were found to be the driving forces of HAB development, with Pseudo-nitzschia spp. causing the risk of ASP during spring and summer upwelling season, and dinoflagellates causing the risk of DSP and PSP during upwelling relaxation, mainly in summer and autumn. The findings were in agreement with the results from toxicity monitoring of shellfish by the Portuguese Institute for Sea and Atmosphere and confirm the suitability of the RNA microarray method for HABs detection and aquaculture management applications.

Comparison of Spatial and Temporal Genetic Differentiation in a Harmful Dinoflagellate Species Emphasizes Impact of Local Processes

Population genetic studies provide insights into intraspecific diversity and dispersal patterns of microorganisms such as protists, which help understanding invasions, harmful algal bloom development and occurrence of seafood poisoning. Genetic differentiation across geography has been reported in many microbial species indicating significant dispersal barriers among different habitats. Temporal differentiation has been less studied and its frequency, drivers and magnitude are poorly understood due to a lack of integral studies. The toxic dinoflagellate species Gambierdiscus caribaeus was sampled during two years in the Florida Keys, and repeatedly from 2006 to 2016 at St. Thomas, US Virgin Islands (USVI), including a three-year period with monthly sampling, to compare spatial and temporal genetic differentiation. Samples from the USVI site showed high temporal variability in local population structure, which correlated with changes in salinity and benthic habitat cover. In some cases, temporal variability exceeded spatial differentiation, despite apparent lack of connectivity and dispersal across the Greater Caribbean Region based on the spatial genetic data. Thus, local processes such as selection might have a stronger influence on population structure in microorganisms than geographic distance. The observed high temporal genetic diversity challenges the prediction of harmful algal blooms and toxin concentrations, but illustrates also the evolutionary potential of microalgae to respond to environmental change.

Simulating Effects of Variable Stoichiometry and Temperature on Mixotrophy in the Harmful Dinoflagellate Karlodinium veneficum

Results from a dynamic mathematical model are presented simulating the growth of the harmful algal bloom (HAB) mixotrophic dinoflagellate Karlodinium veneficum and its algal prey, Rhodomonas salina. The model describes carbon-nitrogen-phosphorus-based interactions within the mixotroph, interlinking autotrophic and phagotrophic nutrition. The model was tuned to experimental data from these species grown under autotrophic conditions and in mixed batch cultures in which nitrogen:phosphorus stoichiometry (input molar N:P of 4, 16, and 32) of both predator and prey varied. A good fit was attained to all experimentally derived carbon biomass data. The potential effects of temperature and nutrient changes on promoting growth of prey and thus K. veneficum bloom formation were explored using this simulation platform. The simulated biomass of K. veneficum was highest when they were functioning as mixotrophs and when they consumed prey under elevated N:P conditions. The scenarios under low N:P responded differently, with simulations showing larger deviation between mixotrophic and autotrophic growth, depending on temperature. When inorganic nutrients were in balanced proportions, lower biomass of the mixotroph was attained at all temperatures in the simulations, suggesting that natural systems might be more resilient against Karlodinium HAB development in warming conditions if nutrients were available in balanced proportions. These simulations underscore the need for models of HAB dynamics to include consideration of prey; modeling HAB as autotrophs is insufficient. The simulations also imply that warmer, wetter springs that may bring more N with lower N:P, such as predicted under climate change scenarios for Chesapeake Bay, may be more conducive to development of these HABs. Prey availability may also increase with temperature due to differential growth temperature responses of K. veneficum and its prey.

Prevention of Harmful Algal Blooms by Control of Growth Parameters

Harmful Algal Blooms (HAB) were investigated to prevent the outbreak of HAB in both freshwater and seawater. Parameters inducing HAB were volcanic eruption, sunlight, aeolian dust, environmental factors (current, pH, dissolved oxygen, food web, turbulence, growth phase), enzyme, iron, nutrients (carbon, nitrogen, phosphorus, sulfur, silicon, minerals) while the critical growth parameter for the outbreak of HAB was iron (Fe). HAB development was halted in freshwater and seawater due to the sulfur compounds (H2S, sulfates) inducing the deficiency of the dissolved Fe in the water. The atomic ratio of N/P is commonly known to be 16/1 in freshwater and 176/1 in seawater for HAB. Therefore, nitrogen can be a relatively limiting factor in seawater while phosphorus in freshwater. HAB could be prevented by control of growth parameters such as pH, temperature, sunlight, turbulence, nitrogen, phosphorus, iron, and sulfur compounds prior to reaching the early exponential phase of algal growth.

Structuring factors of the spatio-temporal variability of macrozoobenthos assemblages in a southern Mediterranean lagoon: How useful for bioindication is a multi-biotic indices approach?

The authors investigated the impact of the extension of the El Kantra Channel on the composition and structure of macrobenthic assemblages in Boughrara Lagoon (Gulf of Gabes, Tunisia along with the use of 4 biotic indices (AMBI, BENTIX, M-AMBI and TUBI). Thirteen stations were sampled seasonally in 2012–2013. Forty-one species were found in 2012–2013 not recorded in 2009–2010, including 20 species of polychaetes belonging to the trophic groups of deposit-feeders and carnivores which are expected to increase in areas disturbed by organic pollution. During the survey, we recorded a high fish mortality, essentially caused by the development of harmful algal blooms (HAB) which increased organic matter deposition, thus inducing polychaete development. This seems to weaken the bio-indicating power of biotic indices used here which, paradoxically, classified all sampled stations at a high ecological status. A review of these indices and their applicability to all marine environments is recommended.

Physical processes leading to the development of an anomalously large Cochlodinium polykrikoides bloom in the East sea/Japan sea

An anomalously large Harmful Algal Bloom (HAB) was observed in the southwest coast of the East/Japan Sea (hereafter the East Sea) during the summer of 2013. During this time period, the presence of Cochlodinium polykrikoides (C. polykrikoides) was detected by the Geostationary Ocean Color Imager (GOCI) and validated by in-situ observations. GOCI observations have been available since 2011, thus allowingto examine various stages of the physical condition of the developing C. polykrikoides bloom, thereby other multi-satellite and buoy measurements obtained between 2011 and 2013. Research results indicate that this HAB is related to four processes: the transport of C. polykrikoides from the south coast of Korea to the HAB area; a relatively high insolation; continuous coastal upwelling; and a favorable Sea Surface Temperature (SST) for C.polykrikoide growth. In examination of the main transport mechanisms, geostrophic current measurements were used to estimate the flow trajectories, showing water from the south coast to the HAB area off the southeast coast of Korea. Result shows that ninety percent of the water from the south coast reached the HAB area in 2013. Furthermore, to examine the insolation mechanism, the Photosynthetically available radiation (PAR) value was derived from the Moderate Resolution Imaging Spectoradiometer (MODIS), showing that PAR values were relatively high in the HAB area during HAB period (47Einm−1day−1). Moreover, Upwelling age (UA) was calculated in order to investigate the strength of coastal upwelling events, which were found to support relatively high UA values during the HAB period. The mean UA value during the HAB period was 1.01, higher than those in 2011 and 2012 which were 0.61 and 0.76, respectively. Finally, SST in the HAB area was also analyzed to examine which conditions were most favorable for HAB growth. Therefore, the results of this study suggest that the four mechanisms can explain the relative contributions of the anomalously HAB development observed off the southeast coast of Korea.

Floraciones algales nocivas durante el periodo 2008-2010 en el Golfo de Nicoya, Costa Rica

En este estudio se analizaron los eventos de floraciones algales nocivas (FAN) en cuatro estaciones de muestreo fijas en el Golfo de Nicoya durante el periodo de enero de 2008 a diciembre de 2010. Se recolectaron muestras de agua a 1 y 5 m de profundidad durante cada evento de FAN. Además, se midieron in situ los parámetros fisicoquímicos: profundidad del disco de Secchi, temperatura, salinidad, oxígeno disuelto y el porcentaje de saturación de oxígeno del agua. Los datos de radiación solar y precipitación fueron suministrados por el Instituto Meteorológico Nacional de Costa Rica. Se determinaron las concentraciones de las microalgas responsables y las especies asociadas. Se registraron 11 eventos, de los cuales el 72.7% se presentaron en la época lluviosa y un 27.3% en la época seca, la mayoría de éstos, durante el fenómeno atmosférico de La Niña. Las especies responsables fueron los dinoflagelados Alexandrium monilatum, Levanderina fissa, Cochlodinium polykrikoides y Prorocentrum minimum, la diatomea Skeletonema costatum y la cianobacteria Trichodesmium erythraeum. Las especies asociadas que se registraron con mayor frecuencia fueron los dinoflagelados Dinophysis caudata, Prorocentrum micans, Tripos fusus, Tripos furca y Protoperidinium conicum. Las FAN en el Golfo de Nicoya fueron más frecuentes durante la época lluviosa, probablemente debido a los aportes fluviales al sistema estuarino de los ríos Tempisque, Barranca y Grande de Tárcoles. Esa estacionalidad, en conjunto con las alteraciones provocadas por eventos atmosféricos globales como La Niña y El Niño, determinó la formación de FAN en el golfo durante el periodo de estudio.

Harmful algal blooms and climate change: Learning from the past and present to forecast the future

Climate change pressures will influence marine planktonic systems globally, and it is conceivable that harmful algal blooms may increase in frequency and severity. These pressures will be manifest as alterations in temperature, stratification, light, ocean acidification, precipitation-induced nutrient inputs, and grazing, but absence of fundamental knowledge of the mechanisms driving harmful algal blooms frustrates most hope of forecasting their future prevalence. Summarized here is the consensus of a recent workshop held to address what currently is known and not known about the environmental conditions that favor initiation and maintenance of harmful algal blooms. There is expectation that harmful algal bloom (HAB) geographical domains should expand in some cases, as will seasonal windows of opportunity for harmful algal blooms at higher latitudes. Nonetheless there is only basic information to speculate upon which regions or habitats HAB species may be the most resilient or susceptible. Moreover, current research strategies are not well suited to inform these fundamental linkages. There is a critical absence of tenable hypotheses for how climate pressures mechanistically affect HAB species, and the lack of uniform experimental protocols limits the quantitative cross-investigation comparisons essential to advancement. A HAB “best practices” manual would help foster more uniform research strategies and protocols, and selection of a small target list of model HAB species or isolates for study would greatly promote the accumulation of knowledge. Despite the need to focus on keystone species, more studies need to address strain variability within species, their responses under multifactorial conditions, and the retrospective analyses of long-term plankton and cyst core data; research topics that are departures from the norm. Examples of some fundamental unknowns include how larger and more frequent extreme weather events may break down natural biogeographic barriers, how stratification may enhance or diminish HAB events, how trace nutrients (metals, vitamins) influence cell toxicity, and how grazing pressures may leverage, or mitigate HAB development. There is an absence of high quality time-series data in most regions currently experiencing HAB outbreaks, and little if any data from regions expected to develop HAB events in the future. A subset of observer sites is recommended to help develop stronger linkages among global, national, and regional climate change and HAB observation programs, providing fundamental datasets for investigating global changes in the prevalence of harmful algal blooms. Forecasting changes in HAB patterns over the next few decades will depend critically upon considering harmful algal blooms within the competitive context of plankton communities, and linking these insights to ecosystem, oceanographic and climate models. From a broader perspective, the nexus of HAB science and the social sciences of harmful algal blooms is inadequate and prevents quantitative assessment of impacts of future HAB changes on human well-being. These and other fundamental changes in HAB research will be necessary if HAB science is to obtain compelling evidence that climate change has caused alterations in HAB distributions, prevalence or character, and to develop the theoretical, experimental, and empirical evidence explaining the mechanisms underpinning these ecological shifts.

Evaluation of rapid cell division in non-uniform cell cycles.

To better understand the mechanisms of development of harmful algal blooms (HABs), accurate estimates of species-specific in situ growth rates are needed. HABs are caused by rapid cell division by the causative microorganisms. To accurately estimate the in situ growth rates of harmful algae having non-uniform and/or irregular cell cycles, we modified a standard equation based on the cell cycle, and calculated the in situ growth rate to describe the process of bloom development in nature. Sampling of a developing bloom of Heterosigma akashiwo in Pohang Bay, Korea, was conducted every 3 h from 15:00 on August 2 to 07:00 on August 4, 2006. The amount of H. akashiwo DNA was measured using flow cytometry following tyramide signal amplification-fluorescence in situ hybridization. On August 2, the percentage of G1 phase cells decreased from 15:00 to 19:00 then increased until 22:00; it then decreased until 07:00 on August 3, followed by an increase to 10:00. This indicates the ability of the cells in nature to undergo more than one round of division per day. During the following night two rounds of division did not occur. The in situ growth rates estimated using the modified equation ranged from 0.31 to 0.53 d(-1) . We conclude that the use of this equation enables more accurate estimates of bloom formation by rapidly dividing cells.

The Influence of a Eutrophic Lake to the River Downstream: Spatiotemporal Algal Composition Changes and the Driving Factors

Algal blooms have been frequently found at the upper reaches of the Tanglang River, which is downstream from the eutrophic Dianchi Lake. The eutrophic lake upstream is considered to be a potential source of phytoplankton, which contributes to the development of harmful algal blooms in the river downstream and can cause many serious problems for the river ecology. However, few studies focused on these kinds of rivers. Therefore, a field observation and laboratory analysis were conducted in this study. The results showed that the Tanglang River was obviously spatially heterogeneous due to the eutrophic Dianchi Lake upstream. The toxic Microcystis from the Dianchi Lake dominated the phytoplankton at the upper reaches, but these were gradually, rather than immediately, replaced by centric diatoms and chlorococalean green algae in the middle and lower reaches. The results of correlation analysis indicated that the changes in hydrodynamic conditions and underwater light intensity accounted for the spatial variations. The differences in the adaptability of different algae to changing aquatic environments explained the spatial variations of phytoplankton abundance. The dominant algae, most of which was from the Dianchi Lake upstream, determined the characteristics of the total abundance at the Tanglang River.

Hydrologic controls on nutrient cycling in an unconfined coastal aquifer.

Groundwater is an important pathway for terrestrially derived nutrients to enter the coastal ocean. In coastal aquifers, groundwater transits the subterranean estuary, a region of sharp gradients in redox conditions and the availability of reactants. In one such system (Waquoit Bay, MA, USA), we observed more than a doubling of the groundwater-associated nitrogen flux to surface water during the summer compared to winter due primarily to a reduction in nitrogen attenuation within the subterranean estuary. Because marine groundwater intrusion has been shown to increase during the summer, we calculate a greater contribution of recycled nutrients from the coastal ocean to the subterranean estuary. We posit that the longer residence times within the subterranean estuary during the winter, which would result from reduced marine groundwater circulation, allow oxygen depletion of the groundwater, creating a favorable environment for important nutrient transformations such as nitrification, denitrification, and anammox. The timing of nutrient delivery to the coastal ocean has important implications for coastal marine ecology including the potential development of harmful algal blooms.

Global land–ocean linkage: direct inputs of nitrogen to coastal waters via submarine groundwater discharge

The role of submarine groundwater discharge (SGD), the leakage of groundwater from aquifers into coastal waters, in coastal eutrophication has been demonstrated mostly for the North American and European coastlines, but poorly quantified in other regions. Here, we present the first spatially explicit global estimates of N inputs via SGD to coastal waters and show that it has increased from about 1.0 to 1.4 Tg of nitrate (NO3-N) per year over the second half of the 20th century. Since this increase is not accompanied by an equivalent increase of groundwater phosphorus (P) and silicon (Si), SGD transport of nitrate is an important factor for the development of harmful algal blooms in coastal waters. Groundwater fluxes of N are linked to areas with high runoff and intensive anthropogenic activity on land, with Southeast Asia, parts of North and Central America, and Europe being hot spots.

The role of dissolved organic matter (DOM) quality in the growth enhancement of Alexandrium fundyense (Dinophyceae) in laboratory culture(1).

Several algal species responsible for harmful algal blooms (HABs), such as Alexandrium fundyense, are mixotrophic under certain environmental conditions. The ability to switch between photosynthetic and heterotrophic modes of growth may play a role in the development of HABs in coastal regions. We examined the influence of humic dissolved organic matter (HDOM) derived from terrestrial (plant/soil) and microbial sources on the growth of A.fundyense. We found that a terrestrially derived HDOM, Suwannee River humic acid (SRHA), did enhance A.fundyense growth; however, a microbially derived HDOM, Pony Lake fulvic acid (PLFA) did not enhance growth. A.fundyense grows in association with bacteria in culture and we observed that bacterial cell densities were much lower in A.fundyense cultures than in bacteria-only cultures, consistent with bacterial grazing by A.fundyense in culture. In bacteria-only cultures with added algal exudates (EX), the addition of PLFA and SRHA resulted in a slight increase in bacterial cell density compared to cultures without HDOM added. Changes over time in the chemical quality of the HDOM in the A.fundyense cultures reflected contributions of microbially derived material with similar characteristics as the PLFA. Overall, these results suggest that the chemical differences between SRHA and PLFA are responsible for the greater effect of SRHA on A.fundyense growth, and that the differential effect is not a result of an effect on the growth of associated bacteria.

해양적조생물제어를 위한 살조물질 Thiazolidinedione 유도체(TD49) 평가

Worldwide development of harmful algal blooms causes serious problem for public health and fisheries industries. To evaluate the algicidal impact on the harmful algae bloom species in aquatic ecosystems of coast, a new algicide thiazolidinedione derivative (TD49) were tentatively examined in the growth stages (i.e., lag, logarithmic and stationary phase) of rapidophyceae , and sp..Three strains could easily destroy in the lag phase due to relatively weak cell walls than those of the logarithmic and stationary phase. It is thought that inoculation of TD49 substances into initial or developmental natural blooms with a threshold concentration () can maximize the algicidal activity. Also, bio-chemical assays revealed that the algicidal substances from all culture strains were likely to be extracellular substances because those cells have easily destroyed in cell walls. On the other hand, natural zooplankton communities were influenced within the exposure experiments of , which is showed the maximum algcidal activity of tested organisms. These results indicate that although the TD49 substance is potential agents for the control of , and sp. in the enclosed eutrophic bay and coastal water, more detailed research of acute toxicity effect on high trophic organism in marine ecosystems need to be conducted.

From River to Lake: Phosphorus partitioning and algal community compositional changes in Western Lake Erie

The Maumee River is an important source of phosphorus (P) loading to western Lake Erie and potentially a source of Microcystis seed colonies contributing to the development of harmful algal blooms in the lake. Herein, we quantified P forms and size fractions, and phytoplankton community composition in the river–lake coupled ecosystem before (June), during (August), and after (September) a large Microcystis bloom in 2009. Additionally, we determined the distribution and density of a newly emergent cyanobacterium, Lyngbya wollei, near Maumee Bay to estimate potential P sequestration. In June, dissolved organic phosphorus (DOP) was the most abundant P form whereas particulate P (partP) was most abundant in August and September. Green algae dominated in June (44% and 60% of total chlorophyll in river and lake, respectively) with substantial Microcystis (17%) present only in the river. Conversely, in August, Microcystis declined in the river (3%) but dominated (32%) the lake. Lake phytoplankton sequestered <6% of water column P even during peak Microcystis blooms; in all lake samples <112μm non-algal particles dominated partP. Lyngbya density averaged 19.4gdrywt/m2, with average Lyngbya P content of 15% (to 75% maximum) of water column P. The presence of Microcystis in the river before appearing in the lake indicates that the river is a potential source of Microcystis seed colonies for later lake blooms, that DOP is an important component of early summer total P, and that L. wollei blooms have the potential to increase P retention in nearshore areas.

Temporal and spatial distribution of harmful algal bloom (HAB) species in coastal waters of Kota Kinabalu, Sabah, Malaysia

Development of harmful algal blooms (HABs) in coastal waters of Kota Kinabalu, Malaysia, is a recurring problem. The blooms are caused by Pyrodinium bahamense var. compressum and Cochlodinium polykrikoides. Recently, another potential HAB species, Gymnodinium catenatum, was identified. The occurrence of these species is known to be related to a range of factors, including seasonal monsoons, nutrients, physical parameters and geomorphology. To understand the occurrence and distribution of the three species, extensive samplings were carried out over a period of one year, including the South West Monsoon (SWM), North East Monsoon (NEM) and Inter-Monsoon (IM) periods, at 5 stations located in 3 different bays off Kota Kinabalu. Cell density of the three HAB species and in situ physical parameters (salinity, pH and temperature) were recorded. Secondary data such as rain fall and wind speed were obtained from the Meteorology Department, Kota Kinabalu. C. polykrikoides and G. catenatum occurred year-round with the highest cell densities of 1.54 × 10 7 cells L −1 and 1.24 × 10 6 cells L −1 in December (NEM). P. bahamense var. compressum was found in low numbers with maximum cell density of 2 × 10 4 cells L −1 in August (SWM). The absence of P. bahamense var. compressum during the highest peak of C. polykrikoides and G. catenatum was related to nutrient concentrations and composition. The three species tended to occur at stations near the river and in a sheltered area. The results of the study indicate that the coastal area of Kota Kinabalu may continue to experience HAB problems, unless environmental conditions change significantly.

The physical oceanography of upwelling systems and the development of harmful algal blooms

The upwelling systems of the eastern boundaries of the world’s oceans are susceptible to harmful algal blooms (HABs) because they are highly productive, nutrient-rich environments, prone to high-biomass blooms. This review identifies those aspects of the physical environment important in the development of HABs in upwelling systems through description and comparison of bloom events in the Benguela, California and Iberia systems. HAB development is dictated by the influence of wind stress on the surface boundary layer through a combination of its influence on surface mixed-layer characteristics and shelf circulation patterns. The timing of HABs is controlled by windstress fluctuations and buoyancy inputs at the seasonal, event and interannual scales. Within this temporal framework, various mesoscale features that interrupt typical upwelling circulation patterns, determine the spatial distribution of HABs. The inner shelf in particular provides a mosaic of shifting habitats, some of which favour HABs. Changes in coastline configuration and orientation, and bottom topography are important in determining the distribution of HABs through their influence on water stratification and retention. A spectrum of coastline configurations, including headlands, capes, peninsulas, Rías, bays and estuaries, representing systems of increasing isolation from the open coast and consequent increasing retention times, are assessed in terms of their vulnerability to HABs.