Sleep Spindle Detection Research Articles

Expert and crowd-sourced validation of an individualized sleep spindle detection method employing complex demodulation and individualized normalization.

A spindle detection method was developed that: (1) extracts the signal of interest (i.e., spindle-related phasic changes in sigma) relative to ongoing “background” sigma activity using complex demodulation, (2) accounts for variations of spindle characteristics across the night, scalp derivations and between individuals, and (3) employs a minimum number of sometimes arbitrary, user-defined parameters. Complex demodulation was used to extract instantaneous power in the spindle band. To account for intra- and inter-individual differences, the signal was z-score transformed using a 60 s sliding window, per channel, over the course of the recording. Spindle events were detected with a z-score threshold corresponding to a low probability (e.g., 99th percentile). Spindle characteristics, such as amplitude, duration and oscillatory frequency, were derived for each individual spindle following detection, which permits spindles to be subsequently and flexibly categorized as slow or fast spindles from a single detection pass. Spindles were automatically detected in 15 young healthy subjects. Two experts manually identified spindles from C3 during Stage 2 sleep, from each recording; one employing conventional guidelines, and the other, identifying spindles with the aid of a sigma (11–16 Hz) filtered channel. These spindles were then compared between raters and to the automated detection to identify the presence of true positives, true negatives, false positives and false negatives. This method of automated spindle detection resolves or avoids many of the limitations that complicate automated spindle detection, and performs well compared to a group of non-experts, and importantly, has good external validity with respect to the extant literature in terms of the characteristics of automatically detected spindles.

Automated sleep spindle detection using IIR filters and a Gaussian Mixture Model.

Sleep spindle detection using modern signal processing techniques such as the Short-Time Fourier Transform and Wavelet Analysis are common research methods. These methods are computationally intensive, especially when analysing data from overnight sleep recordings. The authors of this paper propose an alternative using pre-designed IIR filters and a multivariate Gaussian Mixture Model. Features extracted with IIR filters are clustered using a Gaussian Mixture Model without the use of any subject independent thresholds. The Algorithm was tested on a database consisting of overnight sleep PSG of 5 subjects and an online public spindles database consisting of six 30 minute sleep excerpts. An overall sensitivity of 57% and a specificity of 98.24% was achieved in the overnight database group and a sensitivity of 65.19% at a 16.9% False Positive proportion for the 6 sleep excerpts.

Sleep spindle detection using deep learning: A validation study based on crowdsourcing.

Sleep spindles are significant transient oscillations observed on the electroencephalogram (EEG) in stage 2 of non-rapid eye movement sleep. Deep belief network (DBN) gaining great successes in images and speech is still a novel method to develop sleep spindle detection system. In this paper, crowdsourcing replacing gold standard was applied to generate three different labeled samples and constructed three classes of datasets with a combination of these samples. An F1-score measure was estimated to compare the performance of DBN to other three classifiers on classifying these samples, with the DBN obtaining an result of 92.78%. Then a comparison of two feature extraction methods based on power spectrum density was made on same dataset using DBN. In addition, the DBN trained in dataset was applied to detect sleep spindle from raw EEG recordings and performed a comparable capacity to expert group consensus.

Pattern recognition with adaptive-thresholds for sleep spindle in high density EEG signals.

Medicine and Surgery, University of Pisa, via Savi 10, 56126, Pisa, Italy Sleep spindles are electroencephalographic oscillations peculiar of non-REM sleep, related to neuronal mechanisms underlying sleep restoration and learning consolidation. Based on their very singular morphology, sleep spindles can be visually recognized and detected, even though this approach can lead to significant mis-detections. For this reason, many efforts have been put in developing a reliable algorithm for spindle automatic detection, and a number of methods, based on different techniques, have been tested via visual validation. This work aims at improving current pattern recognition procedures for sleep spindles detection by taking into account their physiological sources of variability. We provide a method as a synthesis of the current state of art that, improving dynamic threshold adaptation, is able to follow modification of spindle characteristics as a function of sleep depth and inter-subjects variability. The algorithm has been applied to physiological data recorded by a high density EEG in order to perform a validation based on visual inspection and on evaluation of expected results from normal night sleep in healthy subjects.

Sleep spindle and K-complex detection using tunable Q-factor wavelet transform and morphological component analysis.

A novel framework for joint detection of sleep spindles and K-complex events, two hallmarks of sleep stage S2, is proposed. Sleep electroencephalography (EEG) signals are split into oscillatory (spindles) and transient (K-complex) components. This decomposition is conveniently achieved by applying morphological component analysis (MCA) to a sparse representation of EEG segments obtained by the recently introduced discrete tunable Q-factor wavelet transform (TQWT). Tuning the Q-factor provides a convenient and elegant tool to naturally decompose the signal into an oscillatory and a transient component. The actual detection step relies on thresholding (i) the transient component to reveal K-complexes and (ii) the time-frequency representation of the oscillatory component to identify sleep spindles. Optimal thresholds are derived from ROC-like curves (sensitivity vs. FDR) on training sets and the performance of the method is assessed on test data sets. We assessed the performance of our method using full-night sleep EEG data we collected from 14 participants. In comparison to visual scoring (Expert 1), the proposed method detected spindles with a sensitivity of 83.18% and false discovery rate (FDR) of 39%, while K-complexes were detected with a sensitivity of 81.57% and an FDR of 29.54%. Similar performances were obtained when using a second expert as benchmark. In addition, when the TQWT and MCA steps were excluded from the pipeline the detection sensitivities dropped down to 70% for spindles and to 76.97% for K-complexes, while the FDR rose up to 43.62 and 49.09%, respectively. Finally, we also evaluated the performance of the proposed method on a set of publicly available sleep EEG recordings. Overall, the results we obtained suggest that the TQWT-MCA method may be a valuable alternative to existing spindle and K-complex detection methods. Paths for improvements and further validations with large-scale standard open-access benchmarking data sets are discussed.

Automatic sleep spindle detection: benchmarking with fine temporal resolution using open science tools.

Sleep spindle properties index cognitive faculties such as memory consolidation and diseases such as major depression. For this reason, scoring sleep spindle properties in polysomnographic recordings has become an important activity in both research and clinical settings. The tediousness of this manual task has motivated efforts for its automation. Although some progress has been made, increasing the temporal accuracy of spindle scoring and improving the performance assessment methodology are two aspects needing more attention. In this paper, four open-access automated spindle detectors with fine temporal resolution are proposed and tested against expert scoring of two proprietary and two open-access databases. Results highlight several findings: (1) that expert scoring and polysomnographic databases are important confounders when comparing the performance of spindle detectors tested using different databases or scorings; (2) because spindles are sparse events, specificity estimates are potentially misleading for assessing automated detector performance; (3) reporting the performance of spindle detectors exclusively with sensitivity and specificity estimates, as is often seen in the literature, is insufficient; including sensitivity, precision and a more comprehensive statistic such as Matthew's correlation coefficient, F1-score, or Cohen's κ is necessary for adequate evaluation; (4) reporting statistics for some reasonable range of decision thresholds provides a much more complete and useful benchmarking; (5) performance differences between tested automated detectors were found to be similar to those between available expert scorings; (6) much more development is needed to effectively compare the performance of spindle detectors developed by different research teams. Finally, this work clarifies a long-standing but only seldomly posed question regarding whether expert scoring truly is a reliable gold standard for sleep spindle assessment.

Spindles in Svarog: framework and software for parametrization of EEG transients.

We present a complete framework for time-frequency parametrization of EEG transients, based upon matching pursuit (MP) decomposition, applied to the detection of sleep spindles. Ranges of spindles duration (>0.5 s) and frequency (11–16 Hz) are taken directly from their standard definitions. Minimal amplitude is computed from the distribution of the root mean square (RMS) amplitude of the signal within the frequency band of sleep spindles. Detection algorithm depends on the choice of just one free parameter, which is a percentile of this distribution. Performance of detection is assessed on the first cohort/second subset of the Montreal Archive of Sleep Studies (MASS-C1/SS2). Cross-validation performed on the 19 available overnight recordings returned the optimal percentile of the RMS distribution close to 97 in most cases, and the following overall performance measures: sensitivity 0.63 ± 0.06, positive predictive value 0.47 ± 0.08, and Matthews coefficient of correlation 0.51 ± 0.04. These concordances are similar to the results achieved on this database by other automatic methods. Proposed detailed parametrization of sleep spindles within a universal framework, encompassing also other EEG transients, opens new possibilities of high resolution investigation of their relations and detailed characteristics. MP decomposition, selection of relevant structures, and simple creation of EEG profiles used previously for assessment of brain activity of patients in disorders of consciousness are implemented in a freely available software package Svarog (Signal Viewer, Analyzer and Recorder On GPL) with user-friendly, mouse-driven interface for review and analysis of EEG. Svarog can be downloaded from http://braintech.pl/svarog.

Detection of K-complexes and sleep spindles (DETOKS) using sparse optimization

BackgroundThis paper addresses the problem of detecting sleep spindles and K-complexes in human sleep EEG. Sleep spindles and K-complexes aid in classifying stage 2 NREM human sleep. New methodWe propose a non-linear model for the EEG, consisting of a transient, low-frequency, and an oscillatory component. The transient component captures the non-oscillatory transients in the EEG. The oscillatory component admits a sparse time–frequency representation. Using a convex objective function, this paper presents a fast non-linear optimization algorithm to estimate the components in the proposed signal model. The low-frequency and oscillatory components are used to detect K-complexes and sleep spindles respectively. Results and comparison with other methodsThe performance of the proposed method is evaluated using an online EEG database. The F1 scores for the spindle detection averaged 0.70 ± 0.03 and the F1 scores for the K-complex detection averaged 0.57 ± 0.02. The Matthews Correlation Coefficient and Cohen's Kappa values were in a range similar to the F1 scores for both the sleep spindle and K-complex detection. The F1 scores for the proposed method are higher than existing detection algorithms. ConclusionsComparable run-times and better detection results than traditional detection algorithms suggests that the proposed method is promising for the practical detection of sleep spindles and K-complexes.

Stage-independent, single lead EEG sleep spindle detection using the continuous wavelet transform and local weighted smoothing.

Sleep spindles are critical in characterizing sleep and have been associated with cognitive function and pathophysiological assessment. Typically, their detection relies on the subjective and time-consuming visual examination of electroencephalogram (EEG) signal(s) by experts, and has led to large inter-rater variability as a result of poor definition of sleep spindle characteristics. Hitherto, many algorithmic spindle detectors inherently make signal stationarity assumptions (e.g., Fourier transform-based approaches) which are inappropriate for EEG signals, and frequently rely on additional information which may not be readily available in many practical settings (e.g., more than one EEG channels, or prior hypnogram assessment). This study proposes a novel signal processing methodology relying solely on a single EEG channel, and provides objective, accurate means toward probabilistically assessing the presence of sleep spindles in EEG signals. We use the intuitively appealing continuous wavelet transform (CWT) with a Morlet basis function, identifying regions of interest where the power of the CWT coefficients corresponding to the frequencies of spindles (11–16 Hz) is large. The potential for assessing the signal segment as a spindle is refined using local weighted smoothing techniques. We evaluate our findings on two databases: the MASS database comprising 19 healthy controls and the DREAMS sleep spindle database comprising eight participants diagnosed with various sleep pathologies. We demonstrate that we can replicate the experts' sleep spindles assessment accurately in both databases (MASS database: sensitivity: 84%, specificity: 90%, false discovery rate 83%, DREAMS database: sensitivity: 76%, specificity: 92%, false discovery rate: 67%), outperforming six competing automatic sleep spindle detection algorithms in terms of correctly replicating the experts' assessment of detected spindles.

Enhanced automated sleep spindle detection algorithm based on synchrosqueezing.

Detection of sleep spindles is of major importance in the field of sleep research. However, manual scoring of spindles on prolonged recordings is very laborious and time-consuming. In this paper, we introduce a new algorithm based on synchrosqueezing transform for detection of sleep spindles. Synchrosqueezing is a powerful time-frequency analysis tool that provides precise frequency representation of a multicomponent signal through mode decomposition. Subsequently, the proposed algorithm extracts and compares the basic features of a spindle-like activity with its surrounding, thus adapting to an expert's visual criteria for spindle scoring. The performance of the algorithm was assessed against the spindle scoring of one expert on continuous electroencephalogram sleep recordings from two subjects. Through appropriate choice of synchrosqueezing parameters, our proposed algorithm obtained a maximum sensitivity of 96.5% with 98.1% specificity. Compared to previously published works, our algorithm has shown improved performance by enhancing the quality of sleep spindle detection.

Combining time-frequency and spatial information for the detection of sleep spindles.

EEG sleep spindles are short (0.5–2.0 s) bursts of activity in the 11–16 Hz band occurring during non-rapid eye movement (NREM) sleep. This sporadic activity is thought to play a role in memory consolidation, brain plasticity, and protection of sleep integrity. Many automatic detectors have been proposed to assist or replace experts for sleep spindle scoring. However, these algorithms usually detect too many events making it difficult to achieve a good tradeoff between sensitivity (Se) and false detection rate (FDr). In this work, we propose a semi-automatic detector comprising a sensitivity phase based on well-established criteria followed by a specificity phase using spatial and spectral criteria. In the sensitivity phase, selected events are those which amplitude in the 10–16 Hz band and spectral ratio characteristics both reject a null hypothesis (p < 0.1) stating that the considered event is not a spindle. This null hypothesis is constructed from events occurring during rapid eye movement (REM) sleep epochs. In the specificity phase, a hierarchical clustering of the selected candidates is done based on events' frequency and spatial position along the anterior-posterior axis. Only events from the classes grouping most (at least 80%) spindles scored by an expert are kept. We obtain Se = 93.2% and FDr = 93.0% in the first phase and Se = 85.4% and FDr = 86.2% in the second phase. For these two phases, Matthew's correlation coefficients are respectively 0.228 and 0.324. Results suggest that spindles are defined by specific spatio-spectral properties and that automatic detection methods can be improved by considering these features.

A comparison of two sleep spindle detection methods based on all night averages: individually adjusted vs. fixed frequencies.

Sleep spindles are frequently studied for their relationship with state and trait cognitive variables, and they are thought to play an important role in sleep-related memory consolidation. Due to their frequent occurrence in NREM sleep, the detection of sleep spindles is only feasible using automatic algorithms, of which a large number is available. We compared subject averages of the spindle parameters computed by a fixed frequency (FixF) (11–13 Hz for slow spindles, 13–15 Hz for fast spindles) automatic detection algorithm and the individual adjustment method (IAM), which uses individual frequency bands for sleep spindle detection. Fast spindle duration and amplitude are strongly correlated in the two algorithms, but there is little overlap in fast spindle density and slow spindle parameters in general. The agreement between fixed and manually determined sleep spindle frequencies is limited, especially in case of slow spindles. This is the most likely reason for the poor agreement between the two detection methods in case of slow spindle parameters. Our results suggest that while various algorithms may reliably detect fast spindles, a more sophisticated algorithm primed to individual spindle frequencies is necessary for the detection of slow spindles as well as individual variations in the number of spindles in general.

Automated detection of sleep spindles in the scalp EEG and estimation of their intracranial current sources: comments on techniques and on related experimental and clinical studies.

SUMMARY This contribution provided comments onmethodological issues related to the auto-mated identification and characterizationof sleep spindles and their intracranialsources, and to the understanding of theirfunctional significance. Specific guide-lines were presented for the computer-based detection and analysis of spindlesand their intracranial sources, as wellas for related experimental and clinicalstudies. AUTHORCONTRIBUTIONS Periklis Y. Ktonas and Errikos-ChaimVentouras contributed to the conceptionanddesignofthework,aswellastodrafting and critically revising it, and toproviding final approval of the versionto be published. They both agree to beaccountable for all aspects of the work. REFERENCES Caporro,M.,Haneef,Z.,Yeh,H.J.,Lenartowicz,A., Buttinelli, C., Parvizi, J., et al. (2012).Functional MRI of sleep spindles and K-complexes. Clin. Neurophysiol . 123, 303–309.doi: 10.1016/j.clinph.2011.06.018Carvalho, D. Z., Gerhardt, G. J., Dellagustin, G.,de Santa-Helena, E. L., Lemke, N., Segal, A.Z., et al. (2014). Loss of sleep spindle fre-quency deceleration in Obstructive SleepApnea.

Analysis of EEG Sleep Spindle Parameters from Apnea Patients Using Massive Computing and Decision Tree

In this study, Matching Pursuit (MP) procedure is applied to the detection and analysis of EEG sleep spindles in patients evaluated for suspected OSAS. Elements having the frequency of EEG sleep spindles are selected from different dictionary sizes, with and without a frequency modulation function (chirp) for signal description. This procedure was done with high computational cost in order to find best parameters for real EEG data description. At the end we used the atom parameters as input for a decision tree-based classifier, making possible to obtain a classification according to apnea-hypopnea index group and allowing to see how atom parameters such as frequency and amplitude are affected by the presence of sleep apnea. http://dx.doi.org/10.18226/23185279.v2iss1p15

Evaluating the use of line length for automatic sleep spindle detection.

Sleep spindles are transient waveforms observed on the electroencephalogram (EEG) during the N2 stage of sleep. In this paper we evaluate the use of line length, an efficient and low-complexity time domain feature, for automatic detection of sleep spindles. We use this feature with a simple algorithm to detect spindles achieving sensitivity of 83.6% and specificity of 87.9%. We also present a comparison of these results with other spindle detection methods evaluated on the same dataset. Further, we implemented the algorithm on a MSP430 microcontroller achieving a power consumption of 56.7 μW. The overall detection performance, combined with the low power consumption show that line length could be a useful feature for detecting sleep spindles in wearable and resource-constrained systems.

Sleep-spindle detection: crowdsourcing and evaluating performance of experts, non-experts and automated methods

Sleep spindles are discrete, intermittent patterns of brain activity that arise as a result of interactions of several circuits in the brain. Increasingly, these oscillations are of biological and clinical interest because of their role in development, learning, and neurological disorders. We used an internet interface to ‘crowdsource’ spindle identification from human experts and non-experts, and compared performance with 6 automated detection algorithms in middle-to-older aged subjects from the general population. We also developed a method for forming group consensus, and refined methods of evaluating the performance of event detectors in physiological data such as polysomnography. Compared to the gold standard, the highest performance was by individual experts and the non-expert group consensus, followed by automated spindle detectors. Crowdsourcing the scoring of sleep data is an efficient method to collect large datasets, even for difficult tasks such as spindle identification. Further refinements to automated sleep spindle algorithms are needed for middle-to-older aged subjects.

Loss of sleep spindle frequency deceleration in Obstructive Sleep Apnea

ObjectiveSleep spindles have been suggested as surrogates of thalamo-cortical activity. Internal frequency modulation within a spindle’s time frame has been demonstrated in healthy subjects, showing that spindles tend to decelerate their frequency before termination. We investigated internal frequency modulation of slow and fast spindles according to Obstructive Sleep Apnea (OSA) severity and brain topography. MethodsSeven non-OSA subjects and 21 patients with OSA contributed with 30min of Non-REM sleep stage 2, subjected to a Matching pursuit procedure with Gabor chirplet functions for automatic detection of sleep spindles and quantification of sleep spindle internal frequency modulation (chirp rate). ResultsModerate OSA patients showed an inferior percentage of slow spindles with deceleration when compared to Mild and Non-OSA groups in frontal and parietal regions. In parietal regions, the percentage of slow spindles with deceleration was negatively correlated with global apnea-hypopnea index (rs=−0.519, p=0.005). DiscussionLoss of physiological sleep spindle deceleration may either represent a disruption of thalamo-cortical loops generating spindle oscillations or some compensatory mechanism, an interesting venue for future research in the context of cognitive dysfunction in OSA. SignificanceQuantification of internal frequency modulation (chirp rate) is proposed as a promising approach to advance description of sleep spindle dynamics in brain pathology.

Sleep spindle detection through amplitude–frequency normal modelling

Manual scoring of sleep spindles can be very time-consuming, and achieving accurate manual scoring on a long-term recording requires high and sustained levels of vigilance, which makes it a highly demanding task with the associated risk of decreased diagnosis accuracy. Although automatic spindle detection would be attractive, most available algorithms are sensitive to variations in spindle amplitude and frequency that occur between both subjects and derivations, reducing their effectiveness.We propose here an algorithm that models the amplitude–frequency spindle distribution with a bivariate normal distribution (one normal model per derivation). Subsequently, spindles are detected when their amplitude–frequency characteristics are included within a given tolerance interval of the corresponding model. As a consequence, spindle detection is not directly based on amplitude and frequency thresholds, but instead on a spindle distribution model that is automatically adapted to each individual subject and derivation.The algorithm was first assessed against the scoring of one sleep scoring expert on EEG samples from seven healthy children. Afterward, a second study compared performance of two additional experts versus the algorithm on a dataset of six EEG samples from adult patients suffering from different pathologies, to submit the method to more challenging and clinically realistic conditions. Smaller and shorter spindles were more difficult to evaluate, as false positives and false negatives showed lower amplitude and smaller length than true positives. In both studies, normal modelling enhanced performance compared to fixed amplitude and frequency thresholds. Normal modelling is therefore attractive, as it enhances spindle detection quality.

Sleep spindle detection using a novel instantaneous frequency definition

There have been different approaches to compute the analytic instantaneous frequency with a variety of background reasoning and applicability in practice, as well as restrictions. This paper presents a new non‐analytic instantaneous frequency definition for a large class of so‐called simple waves. Simple wave contains a wide range of signals for which the concept instantaneous frequency has a perfect physical sense. There are a number of automatic sleep spindle detection methods in the literature, however, due to the complexity of the sleep spindle characteristics from different people and absence of generally accepted sleep spindle definition in the literature, researchers are still exploring more practically acceptable and workable methods. A novel instantaneous frequency definition based semi‐automatic sleep spindle detection approach is also proposed in this paper. A set of experiments on publicly available database clearly indicate that the proposed approaches are very promising. Copyright © 2012 John Wiley &amp; Sons, Ltd.

Sleep spindles predict neural and behavioral changes in motor sequence consolidation

The purpose of this study was to investigate the predictive function of sleep spindles in motor sequence consolidation. BOLD responses were acquired in 10 young healthy subjects who were trained on an explicitly known 5-item sequence using their left nondominant hand, scanned at 9:00 pm while performing that same task and then were retested and scanned 12 h later after a night of sleep during which polysomnographic measures were recorded. An automatic algorithm was used to detect sleep spindles and to quantify their characteristics (i.e., density, amplitude, and duration). Analyses revealed significant positive correlations between gains in performance and the amplitude of spindles. Moreover, significant increases in BOLD signal were observed in several motor-related areas, most of which were localized in the right hemisphere, particularly in the right cortico-striatal system. Such increases in BOLD signal also correlated positively with the amplitude of spindles at several derivations. Taken together, our results show that sleep spindles predict neural and behavioral changes in overnight motor sequence consolidation.