In this study, we reported a silver sinusoidal nanograting used in microchannels, forming H2O/Ag/NOA/SiO2 heterostructure and studied the impact of interactions of grating-coupled surface plasmon polaritons (SPPs) on surface-enhanced Raman scattering (SERS). There are two modes of \(E_{x} (z)\) in the Ag grating, namely, the anti-symmetric mode (AM) at the high SPP resonance frequency and the symmetric mode (SM) at the low-SPP resonance frequency. When the refractive indices of the upper and lower dielectrics of the thin Ag grating are close, there will be a strong coupling between the SPPs of the two interfaces, which will increase the transmittance but reduce the maximum electromagnetic (EM) of the SERS substrate. Additionally, the thinner the Ag grating, the stronger the coupling, accompanied by the frequency shift of the two coupling modes. Our experimental results are supported by FDTD calculations, which have corroborated the importance of the interactions of grating-coupled SPPs in the design of SERS substrate.