This study compared denitrification performances and microbial communities in fluidized bed reactors (FBRs) carrying out autotrophic denitrification using elemental sulfur (S 0 ) and pyrite (FeS 2 ) as electron donors. The reactors were operated for 220 days with nitrate loading rates varying between 23 and 200 mg N-NO 3 − /L ⋅ d and HRT between 48 and 4 h. The highest denitrification rates achieved were 142.2 and 184.4 mg N-NO 3 − /L ⋅ d in pyrite and sulfur FBRs, respectively. Pyrite-driven denitrification produced less SO 4 2 − and no buffer addition was needed to regulate the pH. The sulfur FBR needed instead CaCO 3 to maintain the pH neutral and consequentially more sludge was produced (CaSO 4 precipitation). The active community of pyrite-based systems was investigated and Azospira sp ., Ferruginibacter sp. , Rhodococcus sp. and Pseudomonas sp. were the predominant genera, while Thiobacillus sp. and Sulfurovum sp. dominated the active community in the sulfur FBR. However, Thiobacillus sp. became more dominant when operating at elevated nitrogen loading rate. Patterns of diversity and microbial community assembly were assessed and revealed three distinct stages of microbial community succession which corresponded with the operation of a period of high influent nitrate concentration (135 mg N-NO 3 − /L). It is proposed that a high degree of functional redundancy in the initial microbial communities may have helped both reactors to respond better to such high influent nitrate concentration. • Max denitrification rates were 142.2 and 184.4 mgN-NO 3 − / L ⋅ d in the FeS 2 and S 0 FBRs. • FeS 2 -driven denitrification produced low SO 4 2 − and no buffer addition was needed. • Microbial community succession was observed in response to NLR increased. • Functional redundancy in the AD microbiome resulted in resilience to increased NLRs. • The active community of FeS 2 FBR had Azospira and Pseudomonas as dominant genera.
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