Plateau pika burrows are common feature of degraded grassland in the Qinghai–Tibet Plateau (QTP) and serve as an important indicator of pika activity and grassland degradation. However, the current understanding of the spatial pattern changes of pika burrows and their critical thresholds across a degradation gradient in alpine grassland is deficient. In this study, we investigated and quantified changes in the spatial pattern of plateau pika burrows under typical degraded alpine shrub meadows in the northeastern QTP using an unmanned aerial vehicle and landscape pattern metrics. The degradation of the alpine shrub meadow leads to a change in landscape pattern from a two‐layered structure of alpine shrub and alpine meadow to a mosaic of alpine meadow and bare soil, with plateau pika burrows scattered throughout. Moderate degradation is the tipping point for changes in surface landscape patterns, followed by the disappearance of alpine shrub, the retreat of alpine meadows and the encroachment of bare soil, and the increasing density and size of pika burrows. The area characteristics of alpine meadows have influenced changes in the spatial pattern of pika burrow, and maintaining its proportional area is a vital measure to control the threat of pika burrows to pastures. The results of this paper provide a methodological reference and guidance for the sustainable utilization of grassland on the QTP.