Degradation Of Components Research Articles

Investigation of Surface Modification of Bagasse Fibers: Performance of Asphalt Binders/Mixtures with Bagasse Fibers

The influence of surface modification on the properties of bagasse fibers and asphalt binders/mixtures was investigated. Bagasse fibers were modified by single, binary, and ternary methods with hydrochloric acid, sodium hydroxide, and sodium chlorite, respectively. The physical and chemical properties of bagasse fibers were analyzed by scanning electron microscopy, Fourier transform infrared spectroscopy, and an adsorption test, respectively. The rheological properties of asphalt binders with bagasse fibers or lignin fibers were analyzed by the dynamic shear rheometer test and bending beam rheometer test. In addition, the performance of asphalt mixtures with bagasse fibers or lignin fibers were evaluated by a wheel rutting test, bending test at a low temperature, and water stability test, respectively. In conclusion, the hydrophilic functional groups on the fiber surface were partially eliminated by modification, facilitating the degradation of different fiber components. Furthermore, the degree of fibrillation was improved, and more interfaces with asphalt components were formed, thus enhancing the high-temperature deformation resistance of asphalt binders, but slightly impairing its low-temperature performance. Among all modification methods, the ternary composite modification exerted important influences on fiber structure, oil absorption, and rheological properties of asphalt binders, significantly enhancing the performance of asphalt mixtures. Combined with surface modification methods, bagasse fibers would be promising reinforced pavement materials.

Non-thermal techniques for microbiological safety, nutritional preservation, and enhanced efficiency in dairy processing

The ongoing era of adopted lifestyle among humans involves shortcuts in every aspect, and a similar trend can be observed in food processing and preservation, especially in dairy preparation. Thus, lots of non-thermal processes including high-pressure processing (HPP), ultrasound (US) treatment, pulsed electric fields (PEF), ultraviolet (UV) light and oscillating magnetic fields (OMF), etc. have been invented. By inactivating bacteria, these non-thermal processes keep food's sensory and nutritional quality while also preventing thermal degradation of food components near ambient temperatures. Non-thermal techniques can effectively preserve a food's nutraceuticals and functional potential, while simultaneously ensuring microbiological safety and maintaining the integrity of its bioactive components. During the thermal processing, several heat-labile components of milk and milk products may be lost In contrast, non-thermal processes are gentler compared to thermal treatments, making them preferred choices that avoid compromising nutritional value. It has been observed that non-thermal technology can increase processing efficiency and microstructure through constituent interactions, alteration of enzyme activity, and development of hypoallergenic products. However, in order to use thermal technologies profitably, the risk of operation, equipment cost, technological compatibility, and goal of processing the product must be thoroughly assessed prior to using these processes. Non-thermal processes can also be combined with other strategies like the addition of bio-preservatives or modified atmospheric packaging etc., to enhance the antimicrobial effects. Keywords: Non-thermal processes; Microbiological safety; Dairy processing; Bioactive components; Bioactive compounds; Enzyme activity; Nutritional quality; Bio-preservatives.

ALACEN: A Holistic Herbaceous Biomass Fractionation Process Attaining a Xylose-Rich Stream for Direct Microbial Conversion to Bioplastics.

Lignocellulose biorefining is a promising technology for the sustainable production of chemicals and biopolymers. Usually, when one component is focused on, the chemical nature and yield of the others are compromised. Thus, one of the bottlenecks in biomass biorefining is harnessing the maximum value from all of the lignocellulosic components. Here, we describe a mild stepwise process in a flow-through setup leading to separate flow-out streams containing cinnamic acid derivatives, glucose, xylose, and lignin as the main components from different herbaceous sources. The proposed process shows that minimal degradation of the individual components and conservation of their natural structure are possible. Under optimized conditions, the following fractions are produced from wheat straw based on their respective contents in the feed by the ALkaline ACid ENzyme process: (i) 78% ferulic acid from a mild ALkali step, (ii) 51% monomeric xylose free of fermentation inhibitors by mild ACidic treatment, (iii) 82% glucose from ENzymatic degradation of cellulose, and (iv) 55% native-like lignin. The benefits of using the flow-through setup are demonstrated. The retention of the lignin aryl ether structure was confirmed by HSQC NMR, and this allowed monomers to form from hydrogenolysis. More importantly, the crude xylose-rich fraction was shown to be suitable for producing polyhydroxybutyrate bioplastics. The direct use of the xylose-rich fraction by means of the thermophilic bacteria Schlegelella thermodepolymerans matched 91% of the PHA produced with commercial pure xylose, achieving 138.6 mgPHA/gxylose. Overall, the ALACEN fractionation method allows for a holistic valorization of the principal components of herbaceous biomasses.

Comprehensive insights into the effects of acidogenic off-gas utilization on successive biogas production, microbial community structure and metabolite distribution during two-stage anaerobic digestion

Although two-stage anaerobic digestion (TSAD) technology has been investigated, the mechanisms regarding the impact of acidogenic off-gas (AOG) on successive methane production have not been well addressed. In this study, a novel TSAD system was designed. Food waste, as the main substrate, was co-digested with chicken manure and corn straw. The acidogenic gas beyond atmospheric pressure was introduced into the bottom of the methanogenesis reactor through a stainless steel diffuser. Results showed the addition of AOG increased the methane yield from 435.2 to 597.1 mL/g VSin in successive methanogenesis stage, improved by 37.2 %, and increased the energy yield from 9.0 to 11.3 kJ/g VSsubstrate. However, the theoretical contribution of hydrogenotrophic methanogenesis using H2 contained in AOG was only 15.2 % of the increased methane yield. After the addition of AOG, the decreased levels of ammonia nitrogen and butyrate indicate that the stability of the AD system was improved. The electron transfer system and co-enzyme F420 activity were enhanced; however, the decrease in acetate kinase activity indicates aceticlastic methanogenesis may have been weakened. The microbial diversity and species richness were improved by the added AOG. Methanosarcina was more competitive than Methanothermobacter, enhancing the syntrophic effect. The relative abundance of protein degradation bacteria norank_f_Anaerolineaceae and lipid degradation bacteria Syntrophomonas was increased. Metabolite analysis confirmed that the addition of AOG promoted amino acid metabolism, the biosynthesis of other secondary metabolism and lipid metabolism. The improved degradation of recalcitrant organic components (lipids and proteins) in food waste was responsible for the increased methane yield. This study provides an in-depth understanding of the impact of AOG utilization on successive methane production and has practical implications for the treatment of food waste.

Unraveling the intricate fouling behaviors of landfill leachate components during membrane distillation concentration toward zero liquid discharge

Membrane distillation (MD) holds promise for cost-effectively concentrating wastewater toward zero liquid discharge (ZLD), while membrane fouling problems still hinder its practical application, especially for high-strength wastewater containing complex constituents. This study investigated the effects of different foulant components in actual landfill leachate (LFL) on MD deep concentration performances. The fouling behaviors of LFL components were revealed by comprehensively characterizing and analyzing the physicochemical properties of the fouling layers and membrane-foulant interactions. Results illustrated that suspended solids (SS) and macromolecular organics (MO) played significant yet distinct roles in fouling layer formation. SS (>0.45 μm, ∼24 % TOC) possessed strong adhesion energies with membrane surfaces and constructed the main skeleton of the fouling layer at the preliminary concentration stage; while MO (>20 kDa, 0.36 % TOC) deposition resulted in a densely packed fouling layer, influencing the salt crystallization potential and interfering with water and ammonia transport. In contrast, the low-molecular organics with the highest content (<20 kDa, ∼75 % TOC) were mainly electron-donor monopolar substances weakly adsorbed on the nonpolar membrane surface. Removing SS and MO from LFL notably prevented fouling layer formation and maintained high membrane efficacies (water flux decline mitigated from ∼50 % to ∼15 % and ammonia rejection increased from 71 % to 88 %), even as water recovery increased to 95 %. The findings of this work imply conventional anti-fouling strategies (e.g., complete removal or degradation of organic components) may have gone beyond what is necessary, and will inspire the development of simpler and greener methods to maintain membrane efficacy during high-strength wastewater treatment toward ZLD.

Optimizing humic acid breakdown and methane production via semiconductor-assisted photo-anaerobic digestion

Humic acids (HAs), whether naturally present in anaerobic digestion (AD) substrates or HAs newly formed during fermentation, can become inhibitory to methanogenesis as their concentrations reach certain levels. This study delved extensively into the mechanism underlying the alleviation of HAs inhibition in photo-AD by N-doped carbon quantum dots (NCQDs). These NCQDs were efficiently synthesized from straw using an environmentally friendly pretreatment method. Our proposed method harnessed the combined effect of light exposure and NCQDs, resulting in synergistic enhancement of the cumulative CH4 yield within the HA-inhibited AD system, achieving a remarkable yield of 293.7 ± 17.7 mL/g VS. In-depth analyses were conducted on the remaining dissolved organic matter (DOM) within digesters using 3D-EEM and ESI FT-ICR MS. Simultaneously, the remaining HAs were extracted and subjected to FT-IR analysis. The findings revealed that NCQDs effectively degraded humic acid-like components in DOM into smaller, more manageable micromolecules characterized by lower carbon numbers and reduced double bond equivalent. Additionally, under the influence of light, NCQDs promoted the degradation of aromatic components within HAs. These resulting micromolecules were made readily available for utilization by microorganisms, further contributing to methanogenesis. Furthermore, photoelectrochemical analysis and specific gene qPCR analysis revealed that the photoelectrons from NCQDs and HAs were received and transferred by Ech (electron acceptors) for methanogenesis. Remarkably, this methanogenesis pathway, akin to photosynthesis, played a pivotal and transformative role in the photo-AD system. This work comprehensively revealed the remarkable potential mechanism of semiconductors within the photo-AD system, offering profound insights that can catalyze the development of innovative AD reactors and semiconductor accelerators.

Effects of temperature and moisture fluctuations for suitable use of raw-crushed wind-turbine blade in concrete

Raw-crushed wind-turbine blade (RCWTB), a waste from the recycling of wind-turbine blades, is used as a raw material in concrete in this research. It contains not only fiberglass-composite fibers that bridge the cementitious matrix but also polyurethane and balsa-wood particles. Therefore, concrete containing RCWTB can be notably affected by moisture and temperature fluctuations and by exposure to high temperatures. In this research, the performance of five concrete mixes with 0.0%, 1.5%, 3.0%, 4.5%, and 6.0% RCWTB, respectively, is studied under moist/dry, alternating-sign-temperature-shock, and high-temperature-shock tests. Two damage mechanisms of RCWTB within concrete were found through these tests: on the one hand, micro-cracking of the cementitious matrix, which was verified by microscopic analyses and was dependent on concrete porosity; on the other, damage and degradation of the RCWTB components, as the polyurethane melted, and the balsa-wood particles burned. Both phenomena led to larger remaining-strain levels and reduced concrete compressive strength by up to 25% under temperature and humidity variations, although the bridging effect of the fiberglass-composite fibers was effective when adding RCWTB amounts higher than 3.0%. The compressive-strength loss after the high-temperature-shock test increased with the RCWTB content, reaching maximum values of 8% after an exposure time of 7 days. Statistical analyses revealed that effect of the RCA amount in the concrete was conditioned by the exposure times in all the tests. The accurate definition of those times is therefore key to set an RCWTB content in concrete that ensures its suitable behavior under the environmental conditions analyzed.

Investigation of multinucleation and apoptosis of macrophages of BCG-infected mice and their production of cathepsins and matrix metalloproteinases

The relevance of the study of the role of macrophages and their multinucleated forms in the pathogenesis of tuberculous granulomatosis is determined by its wide prevalence, the presence of severe socio-economic consequences of its morbidity and necrotic complications, which are based on the high destructive potential of macrophages associated with the role of hydrolases in the degradation of extracellular matrix components. Aim of the study was to investigate the features of the multinucleation, apoptosis and expression of a number of hydrolases in macrophages of BCG-infected mice. Material and methods. The intensity of macrophage multinucleation and apoptosis, the peculiarities of their expression of matrix metalloproteinases (MMP-1, MMP-9), catepsins (CatB, CatD), caspase-3, and p53 protein were studied in peritoneal cells cultures of intact and BCG-infected BALB/c mice. Results. The number of multinucleated macrophages increased according to the terms of the experiment, having a maximum value for 3 months of observation, but after 2 months almost reaching this level. The realization of apoptosis, multinucleation of macrophages had a complex character, determining the composition of their subpopulations. The dynamics of the expression of the studied hydrolases by macrophages indicated their unequal role in tissue necrosis at various stages of granulomogenesis. The high functional ability of multinucleated macrophages to produce hydrolases of certain types is shown. Intense expression of MMP-1 in the early stages of granulomogenesis and its maximum value, as well as CatD expression for 3 months, and strong expression of MMP-9 for 6 months were noted. Conclusions. Stimulation of plastic processes in macrophages under conditions of BCG-granulomatosis determines the formation of multinucleated macrophages with high functional potential and intensive expression of hydrolases by macrophages for 2 and 3 months of granulomogenesis. These are periods of high risk of necrotic complications of tuberculous granulomatosis, which should be taken into account when developing methods for their prevention and therapeutic correction.

Secreted Aspartic Proteinases: Key Factors in Candida Infections and Host-Pathogen Interactions.

Extracellular proteases are key factors contributing to the virulence of pathogenic fungi from the genus Candida. Their proteolytic activities are crucial for extracting nutrients from the external environment, degrading host defenses, and destabilizing the internal balance of the human organism. Currently, the enzymes most frequently described in this context are secreted aspartic proteases (Saps). This review comprehensively explores the multifaceted roles of Saps, highlighting their importance in biofilm formation, tissue invasion through the degradation of extracellular matrix proteins and components of the coagulation cascade, modulation of host immune responses via impairment of neutrophil and monocyte/macrophage functions, and their contribution to antifungal resistance. Additionally, the diagnostic challenges associated with Candida infections and the potential of Saps as biomarkers were discussed. Furthermore, we examined the prospects of developing vaccines based on Saps and the use of protease inhibitors as adjunctive therapies for candidiasis. Given the complex biology of Saps and their central role in Candida pathogenicity, a multidisciplinary approach may pave the way for innovative diagnostic strategies and open new opportunities for innovative clinical interventions against candidiasis.

Revealing the crucial role of cuticular wax components in postharvest water loss in passion fruit (Passiflora edulis Sims.)

Passion fruit (Passiflora edulis Sims.) is highly prone to water loss and shrinkage after harvesting. The fruit cuticle serves as a crucial barrier to prevent non-stomatal water loss. However, the impact of cuticle on water loss in passion fruit remains unclear. Therefore, the present study primarily focuses on the influence of the cuticle on postharvest water loss of passion fruit, specifically emphasizing the changes in cuticular wax components. Our results showed that both the thickness and content of cutin decreased during storage. The degradation of wax components exhibited a similar trend to fruit water loss. At the end of the storage, n-triacontane content was stored at 25 °C retained 2.8% of that at 7 °C. Follwed by stearic acid, palmitate, and so on, with amounts at 25 °C are 9.3% and 13.8% at 7 °C, respectively. Interestingly, the reduction of amides, erucamide and hexadecanamide lead to water loss in fruit. So far as we know, this is the first report demonstrating that cuticle amides influence water loss in fruit. This study provides new insights into the role of cuticle in the water loss of passion fruit.

Unravelling the role of cathepsins in cardiovascular diseases.

Lysosomal cathepsins as a regulatory medium have been assessed as potential therapeutic targets for the treatment of various cardiac diseases such as abdominal aortic aneurysm, hypertension, cardiomyopathy, coronary heart disease, atherosclerosis, etc. They are ubiquitous lysosomal proteases with papain-like folded protein structures that are involved in a variety of physiological processes, such as the digestion of proteins, activation of pro-inflammatory molecules, degradation of extracellular matrix components, and maturation of peptide hormones. Cathepsins are classified into three major groups: cysteine cathepsins, aspartic cathepsins, and serine-threonine cathepsins. Each of these groups is further divided into subgroups based on their substrate specificity, structural characteristics, and biochemical properties. Several studies suggest that cathepsins control the degradation of ECM components such as collagen and elastin fibres. These enzymes are highly expressed in macrophages and inflammatory cells, and their upregulation has been demonstrated to be critical in the progression of atherosclerotic lesions. Additionally, increased cathepsin activity has been linked to increased vascular inflammation and oxidative stress, both of which are associated with CVDs. Specifically, the inhibition of cathepsins may reduce the release of pro-apoptotic mediators such as caspase-3 and PARP-1, which are thought to contribute to plaque instability. The potential of cathepsins as biomarkers and therapeutic targets has also been supported by the identification of potential cathepsin inhibitors, which could be used to modulate the activities of cathepsins in a range of diseases. This review shall familiarise the readers with the role of cysteinyl cathepsins and their inhibitors in the pathogenesis of cardiovascular diseases.

Clustering-Based Classification of Polygonal Wheels in a Railway Freight Vehicle Using a Wayside System

Polygonal wheels are one of the most common defects in train wheels, causing a reduction in comfort levels for passengers and a higher degradation of vehicle and track components. With the aim of contributing to the safety and reliability of railway transport, this paper presents the development of an innovative methodology for classifying polygonal wheels based on a wayside system. To achieve that, a numerical train-track interaction model was adopted to simulate the passage of a freight train over a virtual wayside monitoring system composed of a set of accelerometers installed on the rails. Then, the acquired acceleration time series was transformed to a frequency domain using a Fast Fourier transform (FFT), and on this data, damage-sensitive features were extracted. The features based on Principal Component Analysis (PCA) showed great sensitivity to the harmonic order, while the ones based on Continuous Wavelet Transform (CWT) model showed great sensitivity to the defect amplitude. One step further, all features are merged using the Mahalanobis distance in order to obtain a damage index strongly correlated with the polygonal defect. Finally, a cluster analysis allowed the automatic classification of polygonal wheels, according to the harmonic order (harmonic-based) and defect amplitude (amplitude-based). The proposed methodology demonstrated high efficiency in identifying different types of polygonal wheels using a minimum layout of two sensors.

Importance measures for multi-state systems with multiple components under hierarchical dependences

This paper explicitly modeled the hierarchical dependences existing in multi-state systems (MSSs) and proposed novel importance measures (IMs) to rank the criticality of failure-induced factors in different levels. Dependence existing within the component is specified as that arrived shocks make the components become more susceptible to the inherent multi-state degradation. The interaction among components refers to the fact that the degradation of a particular component can be accelerated by others. A comprehensive framework based on Semi-Markov process is constructed to jointly analyze the dependences above. By using the proposed IMs, contributions of each comprising component are firstly measured under hierarchical dependences. Secondly, influences brought by the triggering components on the influenced component are ranked so that the dependence strength among components can be measured. Then, criticality analysis for the suffered failure processes is conducted to specify how the failure processes affect the component reliability level. At last, an illustrative example about a wind turbine generator is presented to show how the proposed IMs can be applied for identifying the key component and its critical failure process.

Synergetic conditioning via oxalic acid enhanced Fe2+/CaO2 and skeleton construct to achieve deep dewatering of sewage sludge

Extracellular polymeric substance (EPS) with highly hydrophilic groups and sludge with high compressibility are determined sludge dewaterability. Herein, Fe2+ catalyzed calcium peroxide (CaO2) assisted by oxalic acid (OA) Fenton-like process combined with coal slime was applied to improve sludge dewaterability. Results demonstrated that the sludge treated by 0.45/1/1.1-OA/Fe2+/CaO2 mM/g DS, the water content (WC), specific resistance to filtration and capillary suction time dropped to 53.01%, 24.3 s and 1.2 × 1012 m/kg, respectively. Under coal slime ratio as 0.6, WC and compressibility were further reduced to 42.72% and 0.66, respectively. The hydroxyl radicals generated by OA/Fe2+/CaO2 under near-neutral pH layer by layer collapsed EPS, resulting in the degradation and migration of inner releasing components and the exposure of inner sludge flocs skeleton. The hydrophilic tryptophan-like protein of TB-EPS were degraded into aromatic protein of S-EPS and exposed inner hydrophobic sites. The protein secondary structures were transformed by destroying hydrophilic functional groups, which were attributed to the reducing α-helix ratio and reconstructing β-sheet. Moreover, coal slime as the skeleton builder lowered compressibility and formed more macropores to increase the filterability of pre-oxidized sludge for the higher intensity of rigid substances. This study deepened the understanding of OA enhanced Fenton-like system effects on sludge dewaterability and proposed a cost-effective and synergistic waste treatment strategy in sludge dewatering.

Simultaneously Monitoring Multiple Autophagic Processes and Assessing Autophagic Flux in Single Cells by In Situ Fluorescence Cross-Correlation Spectroscopy.

Autophagy is a widely conserved and multistep cellular catabolic process and maintains cellular homeostasis and normal cellular functions via the degradation of some harmful intracellular components. It was reported that high basal autophagic activity may be closely related to tumorigenesis. So far, the fluorescence imaging technique has been widely used to study autophagic processes, but this method is only suitable for distinguishing autophagosomes and autolysosomes. Simultaneously monitoring multiple autophagic processes remains a significant challenge due to the lack of an efficient detection method. Here, we demonstrated a new method for simultaneously monitoring multiple autophagic processes and assessing autophagic flux in single cells based on in situ fluorescence cross-correlation spectroscopy (FCCS). In this study, microtubule-associated protein 1A/1B-light chain 3B (LC3B) was fused with two tandem fluorescent proteins [mCherry red fluorescent protein (mCherry) and enhanced green fluorescent protein (EGFP)] to achieve the simultaneous labeling and distinguishing of multiple autophagic structures based on the differences in characteristic diffusion time (τD). Furthermore, we proposed a new parameter "delivery efficiency of autophagosome (DEAP)" to assess autophagic flux based on the cross correlation (CC) value. Our results demonstrate that FCCS can efficiently distinguish three autophagic structures, assess the induced autophagic flux, and discriminate different autophagy regulators. Compared with the commonly used fluorescence imaging technique, the resolution of FCCS remains unaffected by Brownian motion and fluorescent monomers in the cytoplasm and is well suitable to distinguishing differently colored autophagic structures and monitoring autophagy.

Sourcing chitin from exoskeleton of Tenebrio molitor fed with polystyrene or plastic kitchen wrap

In this work we have characterized and compared chitin sourced from exoskeleton of Tenebrio molitor larvae fed with polystyrene or plastic kitchen wrap combined with bran in the ratio 1: 1 with chitin sourced from larvae exoskeleton fed only with bran. Analysis of the frass by ATR-FTIR showed very similar spectra and confirmed degradation of the plastic feed components, while ATR-FTIR analysis of the exoskeleton verified the absence of any plastic residue. Deproteinization followed by demineralization produced 6.78–5.29 % chitin, showing that plastic (polystyrene or plastic kitchen wrap) in the larvae diet resulted in heavier insect exoskeleton, but yielded slightly less chitin, with the lowest value obtained for plastic kitchen wrap in the insect diet. The deacetylation degree of 98.17–98.61 % was determined from measured ATR-FTIR spectra. XRD analysis confirmed the presence of α-chitin with a crystallinity index of 66.5–62 % and crystallite size 4–5 nm. Thermogravimetric analysis showed similar degradation curves for all chitin samples, with two degradation steps. These results show that chitin sourced from exoskeleton of T. molitor larvae fed with plastic (polystyrene or plastic kitchen wrap) and contributing to significant biodegradation of major polluting materials can be a feasible and alternative source of chitin, further promoting a bio-circular economy.

Revealing the impact of autophagy-related genes in rheumatoid arthritis: Insights from bioinformatics

BackgroundRheumatoid arthritis is a systemic inflammatory autoimmune disease that severely impacts physical and mental health. Autophagy is a cellular process involving the degradation of cellular components in lysosomes. However, from a bioinformatics perspective, autophagy-related genes have not been comprehensively elucidated in rheumatoid arthritis. MethodsIn this study, we performed differential analysis of autophagy-related genes in rheumatoid arthritis patients using the GSE93272 dataset from the Gene Expression Omnibus database. Marker genes were screened by least absolute shrinkage and selection operator. Based on marker genes, we used unsupervised cluster analysis to elaborate different autophagy clusters, and further identified modules strongly associated with rheumatoid arthritis by weighted gene co-expression network analysis. In addition, we constructed four machine learning models, random forest model, support vector machine model, generalized linear model and extreme gradient boosting based on marker genes, and based on the optimal machine learning model, a nomogram model was constructed for distinguishing between normal individuals and rheumatoid arthritis patients. Finally, five external independent rheumatoid arthritis datasets were used for the validation of our results. ResultsThe results showed that autophagy-related genes had significant expression differences between normal individuals and osteoarthritis patients. Through least absolute shrinkage and selection operator screening, we identified 31 marker genes and found that they exhibited significant synergistic or antagonistic effects in rheumatoid arthritis, and immune cell infiltration analysis revealed significant changes in immune cell abundance. Subsequently, we elaborated different autophagy clusters (cluster 1 and cluster 2) using unsupervised cluster analysis. Next, further by weighted gene co-expression network analysis, we identified a brown module strongly associated with rheumatoid arthritis. In addition, we constructed a nomogram model for five marker genes (CDKN2A, TP53, ATG16L2, FKBP1A, and GABARAPL1) based on a generalized linear model (area under the curve = 1.000), and the predictive efficiency and accuracy of this nomogram model were demonstrated in the calibration curves, the decision curves and the five external independent datasets were validated. ConclusionThis study identified marker autophagy-related genes in rheumatoid arthritis and analyzed their impact on the disease, providing new perspectives for understanding the role of autophagy-related genes in rheumatoid arthritis and providing new directions for its individualized treatment.

Impaired reprogramming of the autophagy flux in maturing dendritic cells from crohn disease patients with core autophagy gene-related polymorphisms

ABSTRACT Crohn disease (CD) is an inflammatory bowel disease whose pathogenesis involves inappropriate immune responses toward gut microbiota on genetically predisposed backgrounds. Notably, CD is associated with single-nucleotide polymorphisms affecting several genes involved in macroautophagy/autophagy, the catabolic process that ensures the degradation and recycling of cytosolic components and microorganisms. In a clinical translation perspective, monitoring the autophagic activity of CD patients will require some knowledge on the intrinsic functional status of autophagy. Here, we focused on monocyte-derived dendritic cells (DCs) to characterize the intrinsic quantitative features of the autophagy flux. Starting with DCs from healthy donors, we documented a reprogramming of the steady state flux during the transition from the immature to mature status: both the autophagosome pool size and the flux were diminished at the mature stage while the autophagosome turnover remained stable. At the cohort level, DCs from CD patients were comparable to control in term of autophagy flux reprogramming capacity. However, the homozygous presence of ATG16L1 rs2241880 A>G (T300A) and ULK1 rs12303764 (G/T) polymorphisms abolished the capacity of CD patient DCs to reprogram their autophagy flux during maturation. This effect was not seen in the case of CD patients heterozygous for these polymorphisms, revealing a gene dose dependency effect. In contrast, the NOD2 rs2066844 c.2104C>T (R702W) polymorphism did not alter the flux reprogramming capacity of DCs. The data, opening new clinical translation perspectives, indicate that polymorphisms affecting autophagy-related genes can differentially influence the capacity of DCs to reprogram their steady state autophagy flux when exposed to proinflammatory challenges. Abbreviation: BAFA1: bafilomycin A1, CD: Crohn disease; DC: dendritic cells; HD: healthy donor; iDCs: immature DCs; IL: interleukin; J: autophagosome flux; LPS: lipopolysaccharide; MHC: major histocompatibility complex; nA: autophagosome pool size; SNPs: single-nucleotide polymorphisms; PCA: principal component analysis; TLR: toll like receptor; τ: transition time; TNF: tumor necrosis factor.

Apparent Aging and Rejuvenation of Terrestrial Organic Carbon Along the River‐Estuary‐Coastal Ocean Continuum

AbstractThe fates of terrestrial organic carbon (OCterr) during fluvial transport from land to ocean are still not well constrained. This study systematically examines the evolution and dynamics of OCterr along the river‐estuary‐coastal ocean continuum in three fluvial systems discharging to the Chinese marginal seas. The 14C‐depleted characteristics of bulk OC and molecular components of riverine suspended sediments and marine sediments suggest that the Chinese marginal seas are a significant sink of pre‐aged OCterr. Our study reveals significant apparent aging of OCterr within estuaries, likely due to degradation of (younger) labile components, and apparent rejuvenation of OCterr in shelf systems, likely reflecting inputs of younger OCterr from proximal sources along the sediment dispersal pathway. The aging and rejuvenation of OCterr along the river‐ocean continuum confounds the use of plant wax lipid 14C to constrain lateral transport times, and sheds light on more complex OCterr dynamics in marginal seas.

Reliability analysis for continuous degrading systems subject to multi-level failure dependence

This article explicitly models multi-level failure dependence existing in continuous degrading systems with multiple degrading components. Dependence within the component level is specified as that arrived shocks increase the vulnerability to inherent degradation. Dependence among components refers to the fact that the degradation of a particular component can be accelerated by others. The Gamma process is employed as a comprehensive framework for modeling the dependence above. A compound Poisson process and normal distribution are both introduced to describe the stochastic characteristics of random shocks. Procedures for obtaining analytical solutions and simulation results of reliability analysis are both presented. At last, an illustrative example of a hydraulic system is studied to demonstrate the effectiveness and advantages of the proposed method.