To explore the formation mechanism of native point defects in high Al content AlGaN film, the first principles methods are applied to study the native point defects in Al0.5Ga0.5N. The different kinds of vacancies, interstitials, and antisites are investigated. The formation energies of Al0.5Ga0.5N with native point defects under different charge states and growth conditions are analyzed and compared. Then, the preferable charge state, donor and acceptor properties of Al0.5Ga0.5N with different native point defects are explicitly obtained. The results show that AlN, GaN, Ali, and VN exhibit donor properties in p-type condition while VGa, VAl, VN, and NGa exhibit acceptor properties and can play roles as compensating center in n-type Al0.5Ga0.5N under metal rich condition. For N rich condition,VGa, VAl, NGa, and NAl are favorable acceptors in n-type Al0.5Ga0.5N. Meanwhile, the charge distribution and bonding state of Al0.5Ga0.5N with native point defects are explored. It is found the N atoms in Ni and NGa form covalent bond and ionic bond with atoms in Al0.5Ga0.5N. Moreover, the band calculation reveals that the removal of N atom in Al0.5Ga0.5N makes the conduction band fatter and the effective masses of electrons increase while the introduction of N point defects make the valence band flatter, increasing the effective masses of holes. Furthermore, the corresponding thermodynamic transition energy levels of defects under different charge states are summarized. It is found that the thermodynamic transitions for VN, Ni, and NAl may likely to happen under certain conditions. The above studies yield a detailed and quantitative description of native point defects in Al0.5Ga0.5N, which helps to get a deeper insight to the growth and doping of AlGaN.